Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Forward (+)

52476576 .. 52479646

Gene Structure 3071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTTGATACCCTTTACTCCCCCTCTACAGGTTTTATGTTATCAAAAGAGGGAGGCTCCAGTAGTAGAGGGCAGGTGTATAGAAGAAGCATATGATGCTTTGGGTGAACGCCTTGTTCCTACAGCAGCAGCAATGTCAAATCCAAATTTGAAGCATATTGTGGGTTTGGCTGGTCGTCCTGGAGCTGGAAAGAGTACTCTTGCATCTGCAGTAGTCCGGACCGTAAACAAGTTATGGCCTCAGAAAGCTTCATCATTGGATTCCCAAGTTACGCCTCCAGATGTGGCTGCAGTACTTCCCATGGATGGATACCATCTTTACCGTTCTCAGCTGGATGTAATGGAGAATCCTGAGGAAGCTCATGCAAGAAGGGGAGGTGAGACCTTCAACCCTGAGCTACTACTCAAGTCTTTGAAGACTCTAAGAAGTCAGGGATCAGTGTATGCACCTTCATTTGACCATGAAAGATATACCTTTGTGAGCATTCAGAATAAAGTGGTCATAGTAGAAGGAAATTATCTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGTGTACAGAGAATGATCAAAGTTCAAAATTCAGATATTGATTCTACTGCTCCACCTCGCCGAAATCGCTCCTCCTTTCTGGTCAGACTTAAGTGGAAGATTGTTCACCGAAGTGGGCCTTCGTGTGTTATAAACTTATGGCGTCTGCTATGCACACCAAGTGTTTGCGAAAATGCTCGTCTGATTGGTTGTGTGGTGATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

259

Amino Acids

28.76

Weight (kDa)

8.96

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	704
AarI	CACCTGC	1 cut(s)	63
Acc36I	ACCTGC	1 cut(s)	63
AccIII	TCCGGA	1 cut(s)	216
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	2 cut(s)	145, 601
AcyI	GRCGYC	1 cut(s)	715
AdeI	CACNNNGTG	1 cut(s)	734
AfaI	GTAC	3 cut(s)	196, 294, 579
AfiI	CCNNNNNNNGG	3 cut(s)	28, 185, 305
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	4 cut(s)	151, 388, 415, 599
AjnI	CCWGG	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	684
AluBI	AGCT	5 cut(s)	185, 248, 331, 359, 397
AluI	AGCT	5 cut(s)	185, 248, 331, 359, 397
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	442
Aor13HI	TCCGGA	1 cut(s)	216
AoxI	GGCC	2 cut(s)	236, 689
ApeKI	GCWGC	3 cut(s)	125, 128, 287
ApoI	RAATTY	2 cut(s)	145, 601
AspS9I	GGNCC	2 cut(s)	219, 689
AsuHPI	GGTGA	3 cut(s)	116, 389, 671
AvaII	GGWCC	1 cut(s)	219
AxyI	CCTNAGG	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	422
BbvI	GCAGC	3 cut(s)	137, 140, 274
BccI	CCATC	2 cut(s)	299, 321
BciT130I	CCWGG	1 cut(s)	180
BciVI	GTATCC	1 cut(s)	302
BclI	TGATCA	1 cut(s)	588
BcoDI	GTCTC	1 cut(s)	374
BfmI	CTRYAG	4 cut(s)	26, 120, 207, 288
BfrI	CTTAAG	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	63
BfuI	GTATCC	1 cut(s)	302
BisI	GCNGC	3 cut(s)	126, 129, 288
BlsI	GCNGC	3 cut(s)	127, 130, 289
BmcAI	AGTACT	2 cut(s)	196, 294
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	219, 689
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	85, 212
BpiI	GAAGAC	1 cut(s)	422
BplI	GAGNNNNNCTC	2 cut(s)	40, 72
BpmI	CTGGAG	3 cut(s)	42, 201, 261
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 185, 305
Bse1I	ACTGG	1 cut(s)	59
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	310, 340
BseLI	CCNNNNNNNGG	3 cut(s)	28, 185, 305
BseMI	GCAATG	1 cut(s)	138
BseMII	CTCAG	4 cut(s)	254, 341, 342, 384
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	634
BseXI	GCAGC	3 cut(s)	137, 140, 274
BshFI	GGCC	2 cut(s)	238, 691
BsiSI	CCGG	1 cut(s)	217
BslI	CCNNNNNNNGG	3 cut(s)	28, 185, 305
BsmAI	GTCTC	1 cut(s)	374
BsmI	GAATGC	1 cut(s)	483
BsnI	GGCC	2 cut(s)	238, 691
Bso31I	GGTCTC	1 cut(s)	374
Bsp13I	TCCGGA	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	434, 588
Bsp19I	CCATGG	1 cut(s)	300
BspANI	GGCC	2 cut(s)	238, 691
BspCNI	CTCAG	4 cut(s)	253, 340, 343, 385
BspEI	TCCGGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	57
BspMAI	CTGCAG	2 cut(s)	211, 292
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	442
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	2 cut(s)	434, 588
BssNI	GRCGYC	1 cut(s)	715
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	223, 323
BstACI	GRCGYC	1 cut(s)	715
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	577
BstDEI	CTNAG	5 cut(s)	240, 327, 351, 393, 422
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	310, 340
BstKTI	GATC	2 cut(s)	437, 591
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	434, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 639
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	4 cut(s)	26, 120, 207, 288
BstV1I	GCAGC	3 cut(s)	137, 140, 274
BstV2I	GAAGAC	1 cut(s)	422
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	302
BsuRI	GGCC	2 cut(s)	238, 691
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	310, 340
BtsIMutI	CAGTG	1 cut(s)	444
BveI	ACCTGC	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	219, 689
CpoI	CGGWCCG	1 cut(s)	219
CseI	GACGC	1 cut(s)	704
Csp6I	GTAC	3 cut(s)	195, 293, 578
CspI	CGGWCCG	1 cut(s)	219
CviAII	CATG	3 cut(s)	301, 362, 461
CviQI	GTAC	3 cut(s)	195, 293, 578
DdeI	CTNAG	5 cut(s)	240, 327, 351, 393, 422
DpnI	GATC	2 cut(s)	436, 590
DpnII	GATC	2 cut(s)	434, 588
DraIII	CACNNNGTG	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	300
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	1 cut(s)	219
Eco81I	CCTNAGG	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	304, 365, 464
FalI	AAGNNNNNCTT	2 cut(s)	676, 708
FatI	CATG	3 cut(s)	300, 361, 460
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	588
Fnu4HI	GCNGC	3 cut(s)	126, 129, 288
FokI	GGATG	2 cut(s)	317, 347
Fsp4HI	GCNGC	3 cut(s)	126, 129, 288
GluI	GCNGC	3 cut(s)	126, 129, 288
GsuI	CTGGAG	3 cut(s)	42, 201, 261
HaeIII	GGCC	2 cut(s)	238, 691
HapII	CCGG	1 cut(s)	217
HgaI	GACGC	1 cut(s)	704
Hin1I	GRCGYC	1 cut(s)	715
Hin1II	CATG	3 cut(s)	304, 365, 464
HindIII	AAGCTT	1 cut(s)	246
HinfI	GANTC	4 cut(s)	260, 346, 418, 614
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	3 cut(s)	116, 389, 671
Hpy166II	GTNNAC	4 cut(s)	107, 226, 578, 679
Hpy188I	TCNGA	5 cut(s)	243, 489, 607, 659, 756
Hpy188III	TCNNGA	3 cut(s)	217, 278, 350
Hpy8I	GTNNAC	4 cut(s)	107, 226, 578, 679
HpyAV	CCTTC	6 cut(s)	363, 394, 459, 503, 538, 702
HpyCH4III	ACNGT	2 cut(s)	223, 323
HpyCH4V	TGCA	6 cut(s)	203, 209, 290, 365, 446, 726
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 639
HpyF3I	CTNAG	5 cut(s)	240, 327, 351, 393, 422
Hsp92I	GRCGYC	1 cut(s)	715
Hsp92II	CATG	3 cut(s)	304, 365, 464
Kpn2I	TCCGGA	1 cut(s)	216
Ksp22I	TGATCA	1 cut(s)	588
Kzo9I	GATC	2 cut(s)	434, 588
LmnI	GCTCC	4 cut(s)	61, 182, 628, 647
Lsp1109I	GCAGC	3 cut(s)	137, 140, 274
LweI	GCATC	2 cut(s)	85, 212
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	436, 590
MboI	GATC	2 cut(s)	434, 588
MboII	GAAGA	3 cut(s)	95, 427, 682
MluCI	AATT	3 cut(s)	145, 514, 601
MlyI	GAGTC	1 cut(s)	412
MroI	TCCGGA	1 cut(s)	216
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	331
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	180
Mva1269I	GAATGC	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	95, 639
NcoI	CCATGG	1 cut(s)	300
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	434, 588
NlaIII	CATG	3 cut(s)	304, 365, 464
NlaIV	GGNNCC	1 cut(s)	57
OliI	CACNNNNGTG	1 cut(s)	684
PaqCI	CACCTGC	1 cut(s)	63
PctI	GAATGC	1 cut(s)	483
PfeI	GAWTC	3 cut(s)	260, 346, 614
PfoI	TCCNGGA	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	127, 130, 289
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PsiI	TTATAA	1 cut(s)	704
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	2 cut(s)	219, 689
PstI	CTGCAG	2 cut(s)	211, 292
PvuII	CAGCTG	1 cut(s)	331
RsaI	GTAC	3 cut(s)	196, 294, 579
RsaNI	GTAC	3 cut(s)	195, 293, 578
RseI	CAYNNNNRTG	1 cut(s)	684
Rsr2I	CGGWCCG	1 cut(s)	219
RsrII	CGGWCCG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	3 cut(s)	126, 129, 288
Sau3AI	GATC	2 cut(s)	434, 588
Sau96I	GGNCC	2 cut(s)	219, 689
ScaI	AGTACT	2 cut(s)	196, 294
SchI	GAGTC	1 cut(s)	412
ScrFI	CCNGG	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	85, 212
SfcI	CTRYAG	4 cut(s)	26, 120, 207, 288
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	404, 662
SmoI	CTYRAG	2 cut(s)	404, 662
Sse9I	AATT	3 cut(s)	145, 514, 601
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	223, 323
TasI	AATT	3 cut(s)	145, 514, 601
TatI	WGTACW	3 cut(s)	194, 292, 577
TfiI	GAWTC	3 cut(s)	260, 346, 614
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	3 cut(s)	125, 128, 287
TspDTI	ATGAA	3 cut(s)	240, 441, 477
TspRI	CASTG	1 cut(s)	444
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	2 cut(s)	145, 601
ZrmI	AGTACT	2 cut(s)	196, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.