Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Reverse (-)

17215011 .. 17217897

Gene Structure 2887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012293

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAGGTCTCTCTGTCTTCAGCTACCTCTAGAAGTTATCTACATCATTCTTCACCAGAACCGTTGCTTCTCAAAAGAGTAAAATTTCCTACTTGTGATCGTTGTTCGCTGTCCCAATCTTCCACTAGAAGAGTTGGACAACCCTTAGTTGGTAAAACTGAAGCTCTCTCTGCCAAGAGCTACTCTCCTCTGAAGGTTTTATGTTATCAAAAGAGGGAAGCTCCAGTAGTAGAGGGCAGGTGTATAGAAGAAGTATATGATGCTTTGGCTGAACGCCTAGTCCCTACAGCAGCAGCATTGTCAAATCCAAATTTGAAGCATATTGTGGGTTTGGCTGGTCCTCCTGGAGCTGGAAAGAGTACTCTTGCATCTGAAGTAGTACGCCGCGTAAACAAGTTATGGCCTCAGAAAGCTTCATCATTGGATTCCCAAGTTACGCCTCCAGATGTGGCTGCAGTTCTTCCCATGGATGGATATCATCTTTACCGTTCTCAGCTGGATGCAATGGAGAATCCTGACGAAGCTCATGCAAGAAGGGGAGCTCCATGGACCTTCAACCCTGAGCTACTACTCAAGTCTTTGAAGACTCTGAGAAGTCAGGGATCAGTATATGCACCTTCATTTGACCATGGTGTTGGAGATCCAGTAGAAGATGATATCTTTGTGGGCATTCAGAATAAAGTGGTCATAGTGGAAGGAAATTATTTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

255

Amino Acids

27.93

Weight (kDa)

7.01

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	228
AccII	CGCG	1 cut(s)	387
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	2 cut(s)	610, 635
AcsI	RAATTY	2 cut(s)	83, 310
AcuI	CTGAAG	3 cut(s)	180, 212, 393
AfaI	GTAC	2 cut(s)	361, 381
AfiI	CCNNNNNNNGG	3 cut(s)	149, 350, 470
AgsI	TTSAA	3 cut(s)	316, 556, 583
AjnI	CCWGG	1 cut(s)	343
AloI	GAACNNNNNNTCC	2 cut(s)	264, 296
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	2 cut(s)	610, 635
AoxI	GGCC	1 cut(s)	401
ApeKI	GCWGC	3 cut(s)	290, 293, 452
ApoI	RAATTY	2 cut(s)	83, 310
AspS9I	GGNCC	2 cut(s)	338, 549
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	2 cut(s)	338, 549
BanII	GRGCYC	1 cut(s)	544
BbsI	GAAGAC	2 cut(s)	9, 590
Bbv12I	GWGCWC	1 cut(s)	544
BbvI	GCAGC	3 cut(s)	302, 305, 439
BccI	CCATC	1 cut(s)	464
BcgI	CGANNNNNNTGC	2 cut(s)	509, 543
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	3 cut(s)	30, 126, 278
BfmI	CTRYAG	2 cut(s)	285, 453
BfuAI	ACCTGC	1 cut(s)	228
BisI	GCNGC	4 cut(s)	291, 294, 385, 453
BlsI	GCNGC	4 cut(s)	292, 295, 386, 454
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	338, 549
BmgT120I	GGNCC	2 cut(s)	338, 549
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	3 cut(s)	250, 377, 490
BpiI	GAAGAC	2 cut(s)	9, 590
BplI	GAGNNNNNCTC	4 cut(s)	169, 201, 205, 237
BpmI	CTGGAG	3 cut(s)	207, 366, 426
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	557
BsaBI	GATNNNNATC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	13
BsaJI	CCNNGG	3 cut(s)	465, 545, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	630, 660
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 350, 470
Bse1I	ACTGG	2 cut(s)	224, 644
Bse3DI	GCAATG	1 cut(s)	510
Bse8I	GATNNNNATC	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	3 cut(s)	465, 545, 628
BseGI	GGATG	2 cut(s)	475, 505
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	3 cut(s)	149, 350, 470
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	4 cut(s)	419, 506, 552, 581
BseNI	ACTGG	2 cut(s)	224, 644
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	3 cut(s)	302, 305, 439
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	544
BslFI	GGGAC	2 cut(s)	97, 266
BslI	CCNNNNNNNGG	3 cut(s)	149, 350, 470
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	2 cut(s)	97, 266
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	3 cut(s)	97, 602, 640
Bsp19I	CCATGG	3 cut(s)	465, 545, 628
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	4 cut(s)	418, 505, 553, 582
BspFNI	CGCG	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	228
BspPI	GGATC	2 cut(s)	610, 635
BspTNI	GGTCTC	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	2 cut(s)	224, 644
BssECI	CCNNGG	3 cut(s)	465, 545, 628
BssMI	GATC	3 cut(s)	97, 602, 640
BssT1I	CCWWGG	3 cut(s)	465, 545, 628
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	63, 488
Bst6I	CTCTTC	1 cut(s)	124
BstDEI	CTNAG	5 cut(s)	145, 405, 492, 561, 590
BstDSI	CCRYGG	3 cut(s)	465, 545, 628
BstF5I	GGATG	2 cut(s)	475, 505
BstFNI	CGCG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	100, 605, 643
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	3 cut(s)	97, 602, 640
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	2 cut(s)	285, 453
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	302, 305, 439
BstV2I	GAAGAC	2 cut(s)	9, 590
BstX2I	RGATCY	1 cut(s)	640
BstXI	CCANNNNNNTGG	1 cut(s)	635
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	403
BtgI	CCRYGG	3 cut(s)	465, 545, 628
BtsCI	GGATG	2 cut(s)	475, 505
BveI	ACCTGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	338, 549
Csp6I	GTAC	2 cut(s)	360, 380
CviAII	CATG	4 cut(s)	466, 527, 546, 629
CviQI	GTAC	2 cut(s)	360, 380
DdeI	CTNAG	5 cut(s)	145, 405, 492, 561, 590
DpnI	GATC	3 cut(s)	99, 604, 642
DpnII	GATC	3 cut(s)	97, 602, 640
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	542
Eco130I	CCWWGG	3 cut(s)	465, 545, 628
Eco24I	GRGCYC	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	13
Eco32I	GATATC	2 cut(s)	476, 658
Eco47I	GGWCC	2 cut(s)	338, 549
Eco53kI	GAGCTC	1 cut(s)	542
Eco57I	CTGAAG	3 cut(s)	180, 212, 393
EcoICRI	GAGCTC	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	2 cut(s)	476, 658
EcoT14I	CCWWGG	3 cut(s)	465, 545, 628
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	3 cut(s)	465, 545, 628
FaeI	CATG	4 cut(s)	469, 530, 549, 632
FaqI	GGGAC	2 cut(s)	97, 266
FatI	CATG	4 cut(s)	465, 526, 545, 628
Fnu4HI	GCNGC	4 cut(s)	291, 294, 385, 453
FokI	GGATG	2 cut(s)	482, 512
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	4 cut(s)	291, 294, 385, 453
FspBI	CTAG	3 cut(s)	30, 126, 278
GluI	GCNGC	4 cut(s)	291, 294, 385, 453
GsuI	CTGGAG	3 cut(s)	207, 366, 426
HaeIII	GGCC	1 cut(s)	403
Hin1II	CATG	4 cut(s)	469, 530, 549, 632
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	3 cut(s)	425, 511, 586
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	5 cut(s)	192, 373, 408, 591, 675
Hpy188III	TCNNGA	3 cut(s)	30, 443, 515
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	6 cut(s)	187, 528, 562, 627, 689, 724
HpyCH4III	ACNGT	2 cut(s)	63, 488
HpyCH4V	TGCA	5 cut(s)	368, 455, 503, 530, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	5 cut(s)	145, 405, 492, 561, 590
Hsp92II	CATG	4 cut(s)	469, 530, 549, 632
Kzo9I	GATC	3 cut(s)	97, 602, 640
LmnI	GCTCC	4 cut(s)	226, 347, 539, 547
Lsp1109I	GCAGC	3 cut(s)	302, 305, 439
LweI	GCATC	3 cut(s)	250, 377, 490
MaeI	CTAG	3 cut(s)	30, 126, 278
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	3 cut(s)	99, 604, 642
MboI	GATC	3 cut(s)	97, 602, 640
MboII	GAAGA	8 cut(s)	9, 42, 111, 141, 260, 452, 595, 662
MflI	RGATCY	1 cut(s)	640
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	3 cut(s)	83, 310, 700
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	2 cut(s)	115, 616
MnlI	CCTC	7 cut(s)	37, 198, 207, 226, 351, 414, 450
MspA1I	CMGCKG	1 cut(s)	496
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	3 cut(s)	465, 545, 628
NdeII	GATC	3 cut(s)	97, 602, 640
NlaIII	CATG	4 cut(s)	469, 530, 549, 632
PaqCI	CACCTGC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	669
PfeI	GAWTC	2 cut(s)	425, 511
PfoI	TCCNGGA	1 cut(s)	343
PkrI	GCNGC	4 cut(s)	292, 295, 386, 454
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
Psp124BI	GAGCTC	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspPI	GGNCC	2 cut(s)	338, 549
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	640
PvuII	CAGCTG	1 cut(s)	496
RsaI	GTAC	2 cut(s)	361, 381
RsaNI	GTAC	2 cut(s)	360, 380
SacI	GAGCTC	1 cut(s)	544
SatI	GCNGC	4 cut(s)	291, 294, 385, 453
Sau3AI	GATC	3 cut(s)	97, 602, 640
Sau96I	GGNCC	2 cut(s)	338, 549
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	3 cut(s)	250, 377, 490
SfcI	CTRYAG	2 cut(s)	285, 453
SinI	GGWCC	2 cut(s)	338, 549
SmlI	CTYRAG	1 cut(s)	572
SmoI	CTYRAG	1 cut(s)	572
Sse9I	AATT	3 cut(s)	83, 310, 700
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	3 cut(s)	30, 126, 278
SstI	GAGCTC	1 cut(s)	544
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	3 cut(s)	465, 545, 628
TaaI	ACNGT	2 cut(s)	63, 488
TasI	AATT	3 cut(s)	83, 310, 700
TatI	WGTACW	1 cut(s)	359
TauI	GCSGC	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	425, 511
TseI	GCWGC	3 cut(s)	290, 293, 452
TspDTI	ATGAA	2 cut(s)	405, 609
VpaK11BI	GGWCC	2 cut(s)	338, 549
XapI	RAATTY	2 cut(s)	83, 310
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	3 cut(s)	30, 126, 278
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.