Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Reverse (-)

17443195 .. 17447348

Gene Structure 4154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGAGGTCTCTCTGTCTTCAGCTACCTCTAGAAGTTATCTTCATCATTCTTCACCAGGTCCCTCTTTCATCCCTTTTTCCATGGATTCCGATTACTTGCATGAATCTAATGATCCGGGAATCTCCACGAAACCGTTGCTTCTCAAAAGAGTAAAATTTCCTACTTGTGATCGTTGTTCACTGCCCCAATCTTCCACTAGAAGAGTTGGACAACCCTTAGTTGGTAAAACTGGAGCTCTCTCTGCCAAGAGTTACTCTCTGAAGGTTTTATGTTATCAAAAGAGGGAAGCTCCAGTAGTAGAGGGCAGGTGTATAGAAGAAGTATATGATGCTTTGGCTGAACGCCTTGTCCCTACAGCAGCAGCAATGTCAAATCCAAATTTGAAGCATATTGTGGGTTTGGCTGGTCCTCTGGAGCTGGAAAAGAGTACTCTTGCATCTGAAGTAGTACGCCGTGTAAACAAGTTATGGCCTCAGAAACCTTCATCATTGGATTCCCAAGTTACGCCTCCAGATGTGGCTGCGGTTCTTCCCATGGATGGATATCATCTTTACTGTTCTCAGCTGGATGCAATGGAGAATCCTGAGGAAGCTCATGCAAGAAGGGGAGCTCCATGGACCTTCAACCCTGAGCTACTACTCAAGTCTTTGAAGACTCTGAGAAGTCAGGGATCAGTATATGCACCTTCATTTGACCATGGTGTTGGAGATCCAGTAGAAGATGATATCTTTGTGAGCATTCAGTATAAAGTGGTCATAGTGGAAGGAAATTATTTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGCATAGTGTTTCAATTTCTGGCCTTGTACCGACCATCCAATGGACCATGGACTAAACAGCCACAGAGAATGATCATAAGGGTTGATATTGACAAATCTATGCAACGAGTTCTCAAGAGACATATTGCAACAGGGAAGCCCCCAGATGTTGCTAAATGGCGGATTGAGTACAATGACCGGCCTAATGCAGAGACCATAATCAAATCAAAGAAGAATGCTGATTTGATAATCAAGTCAATCGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

358

Amino Acids

40.07

Weight (kDa)

8.59

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	297
AccB7I	CCANNNNNTGG	1 cut(s)	869
AciI	CCGC	2 cut(s)	524, 988
AclWI	GGATC	3 cut(s)	107, 679, 704
AcsI	RAATTY	2 cut(s)	155, 379
AcuI	CTGAAG	2 cut(s)	281, 462
AfaI	GTAC	4 cut(s)	430, 450, 857, 998
AfiI	CCNNNNNNNGG	3 cut(s)	221, 539, 869
AgsI	TTSAA	4 cut(s)	385, 625, 652, 842
AjnI	CCWGG	1 cut(s)	55
AloI	GAACNNNNNNTCC	2 cut(s)	333, 365
AluBI	AGCT	8 cut(s)	23, 236, 290, 418, 565, 593, 611, 634
AluI	AGCT	8 cut(s)	23, 236, 290, 418, 565, 593, 611, 634
Alw21I	GWGCWC	2 cut(s)	238, 613
Alw26I	GTCTC	3 cut(s)	13, 940, 1013
AlwI	GGATC	3 cut(s)	107, 679, 704
AoxI	GGCC	3 cut(s)	470, 849, 1007
ApeKI	GCWGC	3 cut(s)	359, 362, 521
ApoI	RAATTY	2 cut(s)	155, 379
AspS9I	GGNCC	4 cut(s)	59, 407, 618, 872
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	4 cut(s)	59, 407, 618, 872
AxyI	CCTNAGG	1 cut(s)	585
BanII	GRGCYC	2 cut(s)	238, 613
BbsI	GAAGAC	2 cut(s)	9, 659
Bbv12I	GWGCWC	2 cut(s)	238, 613
BbvI	GCAGC	3 cut(s)	371, 374, 508
BccI	CCATC	2 cut(s)	533, 871
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	900
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	13, 940, 1013
BfaI	CTAG	2 cut(s)	30, 198
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	297
BisI	GCNGC	3 cut(s)	360, 363, 522
BlsI	GCNGC	3 cut(s)	361, 364, 523
BmcAI	AGTACT	1 cut(s)	430
Bme1390I	CCNGG	2 cut(s)	57, 117
Bme18I	GGWCC	4 cut(s)	59, 407, 618, 872
BmgT120I	GGNCC	4 cut(s)	59, 407, 618, 872
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	57, 117
BmsI	GCATC	3 cut(s)	319, 446, 559
BpiI	GAAGAC	2 cut(s)	9, 659
BplI	GAGNNNNNCTC	4 cut(s)	241, 273, 274, 306
BpmI	CTGGAG	4 cut(s)	252, 276, 434, 495
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	2 cut(s)	626, 926
BpuMI	CCSGG	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	543
BsaI	GGTCTC	2 cut(s)	13, 1013
BsaJI	CCNNGG	5 cut(s)	81, 534, 614, 697, 875
BsaXI	ACNNNNNCTCC	2 cut(s)	699, 729
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 539, 869
Bse118I	RCCGGY	1 cut(s)	1005
Bse1I	ACTGG	3 cut(s)	235, 293, 713
Bse21I	CCTNAGG	1 cut(s)	585
Bse3DI	GCAATG	2 cut(s)	372, 579
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	5 cut(s)	81, 534, 614, 697, 875
BseGI	GGATG	4 cut(s)	69, 544, 574, 863
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	3 cut(s)	221, 539, 869
BseMI	GCAATG	2 cut(s)	372, 579
BseMII	CTCAG	5 cut(s)	488, 575, 576, 621, 650
BseNI	ACTGG	3 cut(s)	235, 293, 713
BseXI	GCAGC	3 cut(s)	371, 374, 508
BshFI	GGCC	3 cut(s)	472, 851, 1009
BsiHKAI	GWGCWC	2 cut(s)	238, 613
BsiSI	CCGG	2 cut(s)	116, 1006
BslFI	GGGAC	2 cut(s)	45, 335
BslI	CCNNNNNNNGG	3 cut(s)	221, 539, 869
BsmAI	GTCTC	3 cut(s)	13, 940, 1013
BsmFI	GGGAC	2 cut(s)	45, 335
BsmI	GAATGC	2 cut(s)	738, 1048
BsnI	GGCC	3 cut(s)	472, 851, 1009
Bso31I	GGTCTC	2 cut(s)	13, 1013
Bsp1286I	GDGCHC	2 cut(s)	238, 613
Bsp143I	GATC	5 cut(s)	112, 169, 671, 709, 900
Bsp19I	CCATGG	5 cut(s)	81, 534, 614, 697, 875
BspACI	CCGC	2 cut(s)	524, 988
BspANI	GGCC	3 cut(s)	472, 851, 1009
BspCNI	CTCAG	5 cut(s)	487, 574, 577, 622, 651
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	297
BspPI	GGATC	3 cut(s)	107, 679, 704
BspTNI	GGTCTC	2 cut(s)	13, 1013
BsrDI	GCAATG	2 cut(s)	372, 579
BsrFI	RCCGGY	1 cut(s)	1005
BsrI	ACTGG	3 cut(s)	235, 293, 713
BssAI	RCCGGY	1 cut(s)	1005
BssECI	CCNNGG	5 cut(s)	81, 534, 614, 697, 875
BssMI	GATC	5 cut(s)	112, 169, 671, 709, 900
BssT1I	CCWWGG	5 cut(s)	81, 534, 614, 697, 875
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	135, 557
Bst6I	CTCTTC	1 cut(s)	196
BstDEI	CTNAG	6 cut(s)	217, 474, 561, 585, 630, 659
BstDSI	CCRYGG	5 cut(s)	81, 534, 614, 697, 875
BstF5I	GGATG	4 cut(s)	69, 544, 574, 863
BstKTI	GATC	5 cut(s)	115, 172, 674, 712, 903
BstMAI	GTCTC	3 cut(s)	13, 940, 1013
BstMBI	GATC	5 cut(s)	112, 169, 671, 709, 900
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	2 cut(s)	55, 115
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	3 cut(s)	371, 374, 508
BstV2I	GAAGAC	2 cut(s)	9, 659
BstX2I	RGATCY	1 cut(s)	709
BstXI	CCANNNNNNTGG	1 cut(s)	704
BstYI	RGATCY	1 cut(s)	709
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	3 cut(s)	472, 851, 1009
BtgI	CCRYGG	5 cut(s)	81, 534, 614, 697, 875
BtsCI	GGATG	4 cut(s)	69, 544, 574, 863
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	1005
Cfr13I	GGNCC	4 cut(s)	59, 407, 618, 872
CsiI	ACCWGGT	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	429, 449, 856, 997
CviAII	CATG	7 cut(s)	82, 101, 535, 596, 615, 698, 876
CviQI	GTAC	4 cut(s)	429, 449, 856, 997
DdeI	CTNAG	6 cut(s)	217, 474, 561, 585, 630, 659
DpnI	GATC	5 cut(s)	114, 171, 673, 711, 902
DpnII	GATC	5 cut(s)	112, 169, 671, 709, 900
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
EciI	GGCGGA	1 cut(s)	1003
Ecl136II	GAGCTC	2 cut(s)	236, 611
Eco130I	CCWWGG	5 cut(s)	81, 534, 614, 697, 875
Eco24I	GRGCYC	2 cut(s)	238, 613
Eco31I	GGTCTC	2 cut(s)	13, 1013
Eco32I	GATATC	2 cut(s)	545, 727
Eco47I	GGWCC	4 cut(s)	59, 407, 618, 872
Eco53kI	GAGCTC	2 cut(s)	236, 611
Eco57I	CTGAAG	2 cut(s)	281, 462
Eco81I	CCTNAGG	1 cut(s)	585
EcoICRI	GAGCTC	2 cut(s)	236, 611
EcoO109I	RGGNCCY	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	55
EcoRV	GATATC	2 cut(s)	545, 727
EcoT14I	CCWWGG	5 cut(s)	81, 534, 614, 697, 875
EcoT38I	GRGCYC	2 cut(s)	238, 613
ErhI	CCWWGG	5 cut(s)	81, 534, 614, 697, 875
FaeI	CATG	7 cut(s)	85, 104, 538, 599, 618, 701, 879
FaqI	GGGAC	2 cut(s)	45, 335
FatI	CATG	7 cut(s)	81, 100, 534, 595, 614, 697, 875
FbaI	TGATCA	1 cut(s)	900
Fnu4HI	GCNGC	3 cut(s)	360, 363, 522
FokI	GGATG	4 cut(s)	56, 551, 581, 850
FriOI	GRGCYC	2 cut(s)	238, 613
Fsp4HI	GCNGC	3 cut(s)	360, 363, 522
FspBI	CTAG	2 cut(s)	30, 198
GluI	GCNGC	3 cut(s)	360, 363, 522
GsuI	CTGGAG	4 cut(s)	252, 276, 434, 495
HaeIII	GGCC	3 cut(s)	472, 851, 1009
HapII	CCGG	2 cut(s)	116, 1006
Hin1II	CATG	7 cut(s)	85, 104, 538, 599, 618, 701, 879
HinfI	GANTC	6 cut(s)	86, 104, 120, 494, 580, 655
HpaII	CCGG	2 cut(s)	116, 1006
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	179, 460
Hpy188I	TCNGA	6 cut(s)	91, 261, 442, 477, 660, 1076
Hpy188III	TCNNGA	5 cut(s)	30, 413, 512, 584, 943
Hpy8I	GTNNAC	2 cut(s)	179, 460
HpyAV	CCTTC	7 cut(s)	256, 492, 597, 631, 696, 758, 793
HpyCH4III	ACNGT	2 cut(s)	135, 557
HpyCH4V	TGCA	9 cut(s)	100, 437, 572, 599, 683, 831, 931, 956, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	6 cut(s)	217, 474, 561, 585, 630, 659
Hsp92II	CATG	7 cut(s)	85, 104, 538, 599, 618, 701, 879
Ksp22I	TGATCA	1 cut(s)	900
Kzo9I	GATC	5 cut(s)	112, 169, 671, 709, 900
LmnI	GCTCC	5 cut(s)	233, 295, 415, 608, 616
Lsp1109I	GCAGC	3 cut(s)	371, 374, 508
LweI	GCATC	3 cut(s)	319, 446, 559
MabI	ACCWGGT	1 cut(s)	55
MaeI	CTAG	2 cut(s)	30, 198
MaeIII	GTNAC	2 cut(s)	251, 502
MalI	GATC	5 cut(s)	114, 171, 673, 711, 902
MboI	GATC	5 cut(s)	112, 169, 671, 709, 900
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	2 cut(s)	238, 613
MluCI	AATT	4 cut(s)	155, 379, 769, 842
MlyI	GAGTC	1 cut(s)	649
MmeI	TCCRAC	2 cut(s)	187, 685
MnlI	CCTC	8 cut(s)	37, 73, 276, 295, 420, 483, 519, 580
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	2 cut(s)	116, 1006
MspR9I	CCNGG	2 cut(s)	57, 117
Mva1269I	GAATGC	2 cut(s)	738, 1048
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	117
NcoI	CCATGG	5 cut(s)	81, 534, 614, 697, 875
NdeII	GATC	5 cut(s)	112, 169, 671, 709, 900
NlaIII	CATG	7 cut(s)	85, 104, 538, 599, 618, 701, 879
NlaIV	GGNNCC	1 cut(s)	61
PaqCI	CACCTGC	1 cut(s)	297
PctI	GAATGC	2 cut(s)	738, 1048
PfeI	GAWTC	5 cut(s)	86, 104, 120, 494, 580
PflMI	CCANNNNNTGG	1 cut(s)	869
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	361, 364, 523
PleI	GAGTC	1 cut(s)	649
PpsI	GAGTC	1 cut(s)	649
PpuMI	RGGWCCY	1 cut(s)	59
Psp124BI	GAGCTC	2 cut(s)	238, 613
Psp5II	RGGWCCY	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	4 cut(s)	59, 407, 618, 872
PspPPI	RGGWCCY	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	709
PvuII	CAGCTG	1 cut(s)	565
RsaI	GTAC	4 cut(s)	430, 450, 857, 998
RsaNI	GTAC	4 cut(s)	429, 449, 856, 997
SacI	GAGCTC	2 cut(s)	238, 613
SatI	GCNGC	3 cut(s)	360, 363, 522
Sau3AI	GATC	5 cut(s)	112, 169, 671, 709, 900
Sau96I	GGNCC	4 cut(s)	59, 407, 618, 872
ScaI	AGTACT	1 cut(s)	430
SchI	GAGTC	1 cut(s)	649
ScrFI	CCNGG	2 cut(s)	57, 117
SduI	GDGCHC	2 cut(s)	238, 613
SexAI	ACCWGGT	1 cut(s)	55
SfaNI	GCATC	3 cut(s)	319, 446, 559
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	4 cut(s)	59, 407, 618, 872
SmlI	CTYRAG	2 cut(s)	641, 941
SmoI	CTYRAG	2 cut(s)	641, 941
Sse9I	AATT	4 cut(s)	155, 379, 769, 842
SsiI	CCGC	2 cut(s)	524, 988
SspMI	CTAG	2 cut(s)	30, 198
SstI	GAGCTC	2 cut(s)	238, 613
StyD4I	CCNGG	2 cut(s)	55, 115
StyI	CCWWGG	5 cut(s)	81, 534, 614, 697, 875
TaaI	ACNGT	2 cut(s)	135, 557
TaqI	TCGA	1 cut(s)	1068
TasI	AATT	4 cut(s)	155, 379, 769, 842
TatI	WGTACW	2 cut(s)	428, 996
TfiI	GAWTC	5 cut(s)	86, 104, 120, 494, 580
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	3 cut(s)	359, 362, 521
TspDTI	ATGAA	5 cut(s)	32, 58, 117, 474, 678
TspRI	CASTG	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	869
VpaK11BI	GGWCC	4 cut(s)	59, 407, 618, 872
XapI	RAATTY	2 cut(s)	155, 379
XbaI	TCTAGA	1 cut(s)	29
XspI	CTAG	2 cut(s)	30, 198
ZrmI	AGTACT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.