Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Forward (+)

33492572 .. 33496335

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1205700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGCTCTCTCTGTCTTCCGCAACCTCGAAGGCTCACACGTATAATTCCTCACCAGAGCTGTTTCTGCTTGGAAAAGCAAAATTTCCGACATGGGATTGTTATTTTCCCTCTCCTTCGCGAGCTAGGAGAATAGCGAAGCCTTTATTTGCTCAACCTGGAGCCCTCTCTGCCAAGCATAACCCTGTCAAGGTTGTATGTTGTCTAAAGAGAGAAGCTACTGTAGTAGAGGGAAGGTCTATGCATGAAGTATATGATGCTTTGGCCGCACGTCTTGTTCCTACAGCCGCAGCAATAGGGAATCCAAACTTGAAGTATATTGTGGGTTTGGCTGGTTCTCCTGGATCTGGGAAAAGCACTACTGCGTCTGAAGTTGTGCGACGTGTAAACAAGTTATGGCCCCAGAAAGCTTCTGCATTGGATTCTCAAGTTACTCCTCCAGAAGTGGCTGCAGTTCTCCCCATGGATGGTTTCCATCTTTATTGTTCTCAGCTGGATGCAATGGAGAATCCCGAGGAAGCTCATGCAAGAAGGGGAGCTCCATGGACCTTTAACCCTGAGCTACTACTCGAGTCTCTCAAGACTCTGAGAAGTGAGGGATCAGTTTATGCACCGTCATTTGACCATGGTGTTGGAGATCCAGTAGAAGATGATATTTTTGTGACCCTTCAGCATAAAGTGGTCATAGTAGAAGGAAATTATTTATTGTTGGATGATGGGATTTGGAAAGAAGTATCATCTATGTTTGACGAGAAGTGGTTTCTTGAAGTTGATATTGACAAAGCTATGGAACGAGTTCGAAACAGACATATCTTAACGGGGAAGCCTCCAGATGTTGCCAAATGGCGGGTTGAGTACAATGACCGGCCTAATGCAGTGACAGTAAACAAATCAAAGAAGAATGCTGATTTGATAATCAAGTCAATCGACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

312

Amino Acids

34.44

Weight (kDa)

7.09

Isoelectric Point (pI)

45.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	107 - 307	1.4e-07	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	121
AciI	CCGC	4 cut(s)	21, 267, 288, 847
AclWI	GGATC	3 cut(s)	352, 607, 632
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	2 cut(s)	390, 653
AfaI	GTAC	1 cut(s)	857
AfiI	CCNNNNNNNGG	4 cut(s)	190, 347, 467, 846
AflIII	ACRYGT	2 cut(s)	39, 382
AgsI	TTSAA	2 cut(s)	313, 767
AjiI	CACGTC	2 cut(s)	272, 383
AjnI	CCWGG	2 cut(s)	157, 340
Alw21I	GWGCWC	2 cut(s)	9, 541
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	3 cut(s)	352, 607, 632
Ama87I	CYCGRG	2 cut(s)	512, 569
AoxI	GGCC	3 cut(s)	264, 398, 866
ApeKI	GCWGC	2 cut(s)	290, 449
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	795
AspS9I	GGNCC	2 cut(s)	399, 546
AsuHPI	GGTGA	1 cut(s)	45
AsuII	TTCGAA	1 cut(s)	799
AvaI	CYCGRG	2 cut(s)	512, 569
AvaII	GGWCC	1 cut(s)	546
BanII	GRGCYC	3 cut(s)	9, 166, 541
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	9, 541
BbvI	GCAGC	2 cut(s)	302, 436
BccI	CCATC	3 cut(s)	461, 483, 710
BciT130I	CCWGG	2 cut(s)	159, 342
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	3 cut(s)	222, 282, 450
BisI	GCNGC	4 cut(s)	267, 288, 291, 450
BlsI	GCNGC	4 cut(s)	268, 289, 292, 451
Bme1390I	CCNGG	2 cut(s)	159, 342
Bme18I	GGWCC	1 cut(s)	546
BmeT110I	CYCGRG	2 cut(s)	512, 569
BmgBI	CACGTC	2 cut(s)	272, 383
BmgT120I	GGNCC	2 cut(s)	399, 546
BmiI	GGNNCC	2 cut(s)	163, 401
BmrFI	CCNGG	2 cut(s)	159, 342
BmsI	GCATC	2 cut(s)	247, 487
BpiI	GAAGAC	1 cut(s)	9
BpmI	CTGGAG	3 cut(s)	180, 423, 813
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu14I	TTCGAA	1 cut(s)	799
BpuEI	CTTGAG	2 cut(s)	411, 563
BsaAI	YACGTR	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	462, 513, 542, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 347, 467, 846
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	159, 342
BseDI	CCNNGG	4 cut(s)	462, 513, 542, 625
BseGI	GGATG	3 cut(s)	472, 502, 718
BseLI	CCNNNNNNNGG	4 cut(s)	190, 347, 467, 846
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	3 cut(s)	503, 549, 578
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	302, 436
Bsh1236I	CGCG	1 cut(s)	121
BshFI	GGCC	3 cut(s)	266, 400, 868
BsiHKAI	GWGCWC	2 cut(s)	9, 541
BsiHKCI	CYCGRG	2 cut(s)	512, 569
BsiSI	CCGG	1 cut(s)	865
BslI	CCNNNNNNNGG	4 cut(s)	190, 347, 467, 846
BsmAI	GTCTC	1 cut(s)	579
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	3 cut(s)	266, 400, 868
BsoBI	CYCGRG	2 cut(s)	512, 569
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	3 cut(s)	9, 166, 541
Bsp143I	GATC	3 cut(s)	344, 599, 637
Bsp19I	CCATGG	3 cut(s)	462, 542, 625
Bsp68I	TCGCGA	1 cut(s)	121
BspACI	CCGC	4 cut(s)	21, 267, 288, 847
BspANI	GGCC	3 cut(s)	266, 400, 868
BspCNI	CTCAG	3 cut(s)	502, 550, 579
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	163, 401
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	3 cut(s)	352, 607, 632
BspT104I	TTCGAA	1 cut(s)	799
BsrDI	GCAATG	1 cut(s)	507
BsrFI	RCCGGY	1 cut(s)	864
BsrI	ACTGG	1 cut(s)	641
BssAI	RCCGGY	1 cut(s)	864
BssECI	CCNNGG	4 cut(s)	462, 513, 542, 625
BssMI	GATC	3 cut(s)	344, 599, 637
BssT1I	CCWWGG	3 cut(s)	462, 542, 625
Bst2UI	CCWGG	2 cut(s)	159, 342
Bst4CI	ACNGT	3 cut(s)	223, 615, 883
BstBAI	YACGTR	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	3 cut(s)	489, 558, 587
BstDSI	CCRYGG	3 cut(s)	462, 542, 625
BstF5I	GGATG	3 cut(s)	472, 502, 718
BstFNI	CGCG	1 cut(s)	121
BstKTI	GATC	3 cut(s)	347, 602, 640
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	3 cut(s)	344, 599, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 170, 266
BstNI	CCWGG	2 cut(s)	159, 342
BstSCI	CCNGG	2 cut(s)	157, 340
BstSFI	CTRYAG	3 cut(s)	222, 282, 450
BstUI	CGCG	1 cut(s)	121
BstV1I	GCAGC	2 cut(s)	302, 436
BstV2I	GAAGAC	1 cut(s)	9
BstX2I	RGATCY	2 cut(s)	344, 637
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	2 cut(s)	344, 637
BsuRI	GGCC	3 cut(s)	266, 400, 868
BtgI	CCRYGG	3 cut(s)	462, 542, 625
BtrI	CACGTC	2 cut(s)	272, 383
BtsCI	GGATG	3 cut(s)	472, 502, 718
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	882
BtuMI	TCGCGA	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	864
Cfr13I	GGNCC	2 cut(s)	399, 546
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	1 cut(s)	856
CviAII	CATG	6 cut(s)	93, 245, 463, 524, 543, 626
CviQI	GTAC	1 cut(s)	856
DdeI	CTNAG	3 cut(s)	489, 558, 587
DpnI	GATC	3 cut(s)	346, 601, 639
DpnII	GATC	3 cut(s)	344, 599, 637
EaeI	YGGCCR	1 cut(s)	264
Ecl136II	GAGCTC	2 cut(s)	7, 539
Eco130I	CCWWGG	3 cut(s)	462, 542, 625
Eco24I	GRGCYC	3 cut(s)	9, 166, 541
Eco47I	GGWCC	1 cut(s)	546
Eco53kI	GAGCTC	2 cut(s)	7, 539
Eco57I	CTGAAG	2 cut(s)	390, 653
Eco88I	CYCGRG	2 cut(s)	512, 569
EcoICRI	GAGCTC	2 cut(s)	7, 539
EcoRII	CCWGG	2 cut(s)	157, 340
EcoT14I	CCWWGG	3 cut(s)	462, 542, 625
EcoT22I	ATGCAT	1 cut(s)	246
EcoT38I	GRGCYC	3 cut(s)	9, 166, 541
ErhI	CCWWGG	3 cut(s)	462, 542, 625
FaeI	CATG	6 cut(s)	96, 248, 466, 527, 546, 629
FatI	CATG	6 cut(s)	92, 244, 462, 523, 542, 625
FauI	CCCGC	1 cut(s)	840
Fnu4HI	GCNGC	4 cut(s)	267, 288, 291, 450
FokI	GGATG	3 cut(s)	479, 509, 725
FriOI	GRGCYC	3 cut(s)	9, 166, 541
Fsp4HI	GCNGC	4 cut(s)	267, 288, 291, 450
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	4 cut(s)	267, 288, 291, 450
GsuI	CTGGAG	3 cut(s)	180, 423, 813
HaeIII	GGCC	3 cut(s)	266, 400, 868
HapII	CCGG	1 cut(s)	865
HgaI	GACGC	1 cut(s)	354
Hin1II	CATG	6 cut(s)	96, 248, 466, 527, 546, 629
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	5 cut(s)	301, 422, 508, 572, 583
HpaII	CCGG	1 cut(s)	865
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	388, 886
Hpy188I	TCNGA	3 cut(s)	90, 370, 588
Hpy188III	TCNNGA	6 cut(s)	120, 440, 512, 580, 764, 830
Hpy8I	GTNNAC	2 cut(s)	388, 886
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	6 cut(s)	25, 126, 228, 525, 677, 686
HpyCH4III	ACNGT	3 cut(s)	223, 615, 883
HpyCH4IV	ACGT	3 cut(s)	41, 271, 382
HpyCH4V	TGCA	7 cut(s)	244, 416, 452, 500, 527, 611, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 170, 266
HpyF3I	CTNAG	3 cut(s)	489, 558, 587
HpySE526I	ACGT	3 cut(s)	41, 271, 382
Hsp92II	CATG	6 cut(s)	96, 248, 466, 527, 546, 629
Kzo9I	GATC	3 cut(s)	344, 599, 637
LmnI	GCTCC	4 cut(s)	4, 161, 536, 544
Lsp1109I	GCAGC	2 cut(s)	302, 436
LweI	GCATC	2 cut(s)	247, 487
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	3 cut(s)	41, 271, 382
MaeIII	GTNAC	3 cut(s)	430, 661, 877
MalI	GATC	3 cut(s)	346, 601, 639
MboI	GATC	3 cut(s)	344, 599, 637
MboII	GAAGA	3 cut(s)	9, 659, 910
MflI	RGATCY	2 cut(s)	344, 637
MhlI	GDGCHC	3 cut(s)	9, 166, 541
MluCI	AATT	3 cut(s)	46, 83, 697
MlyI	GAGTC	2 cut(s)	577, 581
MmeI	TCCRAC	3 cut(s)	113, 613, 690
MnlI	CCTC	9 cut(s)	37, 61, 121, 176, 223, 447, 508, 589, 837
Mph1103I	ATGCAT	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	2 cut(s)	552, 815
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	1 cut(s)	865
MspR9I	CCNGG	2 cut(s)	159, 342
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	2 cut(s)	159, 342
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	67, 170, 266
NcoI	CCATGG	3 cut(s)	462, 542, 625
NdeII	GATC	3 cut(s)	344, 599, 637
NlaIII	CATG	6 cut(s)	96, 248, 466, 527, 546, 629
NlaIV	GGNNCC	2 cut(s)	163, 401
NmuCI	GTSAC	2 cut(s)	661, 877
NruI	TCGCGA	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	799
PaeR7I	CTCGAG	1 cut(s)	569
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	3 cut(s)	301, 422, 508
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	4 cut(s)	268, 289, 292, 451
PleI	GAGTC	2 cut(s)	577, 580
PpsI	GAGTC	2 cut(s)	577, 580
Ppu21I	YACGTR	1 cut(s)	42
Psp124BI	GAGCTC	2 cut(s)	9, 541
Psp6I	CCWGG	2 cut(s)	157, 340
PspGI	CCWGG	2 cut(s)	157, 340
PspN4I	GGNNCC	2 cut(s)	163, 401
PspPI	GGNCC	2 cut(s)	399, 546
PspXI	VCTCGAGB	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	344, 637
PvuII	CAGCTG	1 cut(s)	493
RruI	TCGCGA	1 cut(s)	121
RsaI	GTAC	1 cut(s)	857
RsaNI	GTAC	1 cut(s)	856
SacI	GAGCTC	2 cut(s)	9, 541
SaqAI	TTAA	2 cut(s)	552, 815
SatI	GCNGC	4 cut(s)	267, 288, 291, 450
Sau3AI	GATC	3 cut(s)	344, 599, 637
Sau96I	GGNCC	2 cut(s)	399, 546
SchI	GAGTC	2 cut(s)	577, 581
ScrFI	CCNGG	2 cut(s)	159, 342
SduI	GDGCHC	3 cut(s)	9, 166, 541
SfaNI	GCATC	2 cut(s)	247, 487
SfcI	CTRYAG	3 cut(s)	222, 282, 450
Sfr274I	CTCGAG	1 cut(s)	569
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	1 cut(s)	546
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	3 cut(s)	426, 569, 578
SmoI	CTYRAG	3 cut(s)	426, 569, 578
Sse9I	AATT	3 cut(s)	46, 83, 697
SsiI	CCGC	4 cut(s)	21, 267, 288, 847
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	2 cut(s)	9, 541
StyD4I	CCNGG	2 cut(s)	157, 340
StyI	CCWWGG	3 cut(s)	462, 542, 625
TaaI	ACNGT	3 cut(s)	223, 615, 883
TaiI	ACGT	3 cut(s)	44, 274, 385
TaqI	TCGA	4 cut(s)	29, 570, 799, 927
TasI	AATT	3 cut(s)	46, 83, 697
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	2 cut(s)	269, 290
TfiI	GAWTC	3 cut(s)	301, 422, 508
Tru1I	TTAA	2 cut(s)	552, 815
Tru9I	TTAA	2 cut(s)	552, 815
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	2 cut(s)	661, 877
TseI	GCWGC	2 cut(s)	290, 449
Tsp45I	GTSAC	2 cut(s)	661, 877
TspDTI	ATGAA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	882
VpaK11BI	GGWCC	1 cut(s)	546
XapI	RAATTY	1 cut(s)	83
XhoI	CTCGAG	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.