Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Forward (+)

52603479 .. 52607866

Gene Structure 4388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25976

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGGTCTCTCTGTCTTCAGCTACCTCTAGAAGTTATCTTCATCATTCTTCACCAGAACCGTTGCTTCTCAAAAGAGTAAAATTTCCTACTTGTGATCGTTGTCCGCTGTCCCAATCTTCCACTAGAAGAGTTGGACAACCCTTAGTTGGTAAAACTGGAGCTCTCTCTGCCAAGAGTTACTCTCTGAAGGTTTTATGTTATCAAAAGAGGGAAGCTCCAGTAGTAGAGGGCAGGTGTATCGAAGAAGTATATGATGCTTTGGCTGAACGCCTTGTCCCTACAGCAGCAGCAATGTCAAATCCAAATTTGAAGCATATTGTGGGTTTGGCTGGTCCTCCTGGAGCTGGAAAGAGTACTCTTGCATCTGAAGTAGTACGCCGTGTAAACAAGTTATGGCCTCAGAAAGCTTCATCATTGGATTCCCAAGTTATGCCTCCAGATGTGGCTGCGGTTCTTCCCATGGATGGATATCATCTTTACCGTTCTCAGCTGGATGCAATGGAGAATCCTGAGGAAGCTCACGCAAGAAGGGGAGCTCCATGGACCTTCAACCCTCAGCTGATACTCAAGTCTTTGAAGACTCTGAGAAGTCAGGGATCAGTATATGCACCTTCATTTGACCATGGTGTTGGAGATCCAGTAGAAGATGATATCTTTGTGAGCATTCAGAATAAAGTGGTCATAGTGGAAGGAAATTATTTGTTCTTGGATAATGGGGTGTGGAAGGAAATATCGTCTATGTTTGATGAGAAGTGGTTCATAGAGGTTGATATTGACAAATCTATGCAACGAGTTCTCAAGAGACATATTGCAACAGGGAAGCCCCCAGATGTTGCTAAATGGCGGATTGAGTACAATGACCGGCCTAATGCAGAGACCATAATCAAATCAAAGAAGAATGCTGATTTGATAATCAAGTCAATCGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

311

Amino Acids

34.61

Weight (kDa)

8.88

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRK	PF00485	107 - 308	8.3e-09	Phosphoribulokinase / Uridine kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	225
Acc36I	ACCTGC	1 cut(s)	225
AciI	CCGC	3 cut(s)	107, 452, 847
AclWI	GGATC	2 cut(s)	607, 632
AcsI	RAATTY	2 cut(s)	83, 307
AcuI	CTGAAG	2 cut(s)	209, 390
AfaI	GTAC	3 cut(s)	358, 378, 857
AfiI	CCNNNNNNNGG	3 cut(s)	149, 347, 467
AgsI	TTSAA	3 cut(s)	313, 553, 580
AjnI	CCWGG	1 cut(s)	340
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	9 cut(s)	23, 164, 218, 347, 410, 493, 521, 539, 562
AluI	AGCT	9 cut(s)	23, 164, 218, 347, 410, 493, 521, 539, 562
Alw21I	GWGCWC	2 cut(s)	166, 541
Alw26I	GTCTC	3 cut(s)	13, 799, 872
AlwI	GGATC	2 cut(s)	607, 632
AoxI	GGCC	2 cut(s)	398, 866
ApeKI	GCWGC	3 cut(s)	287, 290, 449
ApoI	RAATTY	2 cut(s)	83, 307
Asp700I	GAANNNNTTC	1 cut(s)	758
AspS9I	GGNCC	2 cut(s)	335, 546
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	2 cut(s)	335, 546
AxyI	CCTNAGG	1 cut(s)	513
BaeI	ACNNNNGTAYC	2 cut(s)	557, 590
BanII	GRGCYC	2 cut(s)	166, 541
BbsI	GAAGAC	2 cut(s)	9, 587
Bbv12I	GWGCWC	2 cut(s)	166, 541
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	3 cut(s)	299, 302, 436
BccI	CCATC	1 cut(s)	461
BceAI	ACGGC	1 cut(s)	366
BcgI	CGANNNNNNTGC	2 cut(s)	223, 257
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	3 cut(s)	13, 799, 872
BfaI	CTAG	2 cut(s)	30, 126
BfmI	CTRYAG	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	225
BisI	GCNGC	3 cut(s)	288, 291, 450
BlsI	GCNGC	3 cut(s)	289, 292, 451
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	2 cut(s)	335, 546
BmgT120I	GGNCC	2 cut(s)	335, 546
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	247, 374, 487
BpiI	GAAGAC	2 cut(s)	9, 587
BplI	GAGNNNNNCTC	4 cut(s)	169, 201, 202, 234
BpmI	CTGGAG	4 cut(s)	180, 204, 363, 423
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	554, 785
BsaBI	GATNNNNATC	1 cut(s)	471
BsaI	GGTCTC	2 cut(s)	13, 872
BsaJI	CCNNGG	3 cut(s)	462, 542, 625
BsaXI	ACNNNNNCTCC	2 cut(s)	627, 657
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 347, 467
Bse118I	RCCGGY	1 cut(s)	864
Bse1I	ACTGG	3 cut(s)	163, 221, 641
Bse21I	CCTNAGG	1 cut(s)	513
Bse3DI	GCAATG	2 cut(s)	300, 507
Bse8I	GATNNNNATC	1 cut(s)	471
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	462, 542, 625
BseGI	GGATG	2 cut(s)	472, 502
BseJI	GATNNNNATC	1 cut(s)	471
BseLI	CCNNNNNNNGG	3 cut(s)	149, 347, 467
BseMI	GCAATG	2 cut(s)	300, 507
BseMII	CTCAG	5 cut(s)	416, 503, 504, 572, 578
BseNI	ACTGG	3 cut(s)	163, 221, 641
BseXI	GCAGC	3 cut(s)	299, 302, 436
BshFI	GGCC	2 cut(s)	400, 868
BsiHKAI	GWGCWC	2 cut(s)	166, 541
BsiSI	CCGG	1 cut(s)	865
BslFI	GGGAC	2 cut(s)	97, 263
BslI	CCNNNNNNNGG	3 cut(s)	149, 347, 467
BsmAI	GTCTC	3 cut(s)	13, 799, 872
BsmFI	GGGAC	2 cut(s)	97, 263
BsmI	GAATGC	2 cut(s)	666, 907
BsnI	GGCC	2 cut(s)	400, 868
Bso31I	GGTCTC	2 cut(s)	13, 872
Bsp1286I	GDGCHC	2 cut(s)	166, 541
Bsp143I	GATC	3 cut(s)	97, 599, 637
Bsp19I	CCATGG	3 cut(s)	462, 542, 625
BspACI	CCGC	3 cut(s)	107, 452, 847
BspANI	GGCC	2 cut(s)	400, 868
BspCNI	CTCAG	5 cut(s)	415, 502, 505, 571, 579
BspMI	ACCTGC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	607, 632
BspTNI	GGTCTC	2 cut(s)	13, 872
BsrDI	GCAATG	2 cut(s)	300, 507
BsrFI	RCCGGY	1 cut(s)	864
BsrI	ACTGG	3 cut(s)	163, 221, 641
BssAI	RCCGGY	1 cut(s)	864
BssECI	CCNNGG	3 cut(s)	462, 542, 625
BssMI	GATC	3 cut(s)	97, 599, 637
BssT1I	CCWWGG	3 cut(s)	462, 542, 625
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	63, 485
Bst6I	CTCTTC	1 cut(s)	124
BstDEI	CTNAG	6 cut(s)	145, 402, 489, 513, 558, 587
BstDSI	CCRYGG	3 cut(s)	462, 542, 625
BstF5I	GGATG	2 cut(s)	472, 502
BstKTI	GATC	3 cut(s)	100, 602, 640
BstMAI	GTCTC	3 cut(s)	13, 799, 872
BstMBI	GATC	3 cut(s)	97, 599, 637
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	299, 302, 436
BstV2I	GAAGAC	2 cut(s)	9, 587
BstX2I	RGATCY	1 cut(s)	637
BstXI	CCANNNNNNTGG	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	637
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	400, 868
BtgI	CCRYGG	3 cut(s)	462, 542, 625
BtsCI	GGATG	2 cut(s)	472, 502
BveI	ACCTGC	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	864
Cfr13I	GGNCC	2 cut(s)	335, 546
Csp6I	GTAC	3 cut(s)	357, 377, 856
CviAII	CATG	3 cut(s)	463, 543, 626
CviQI	GTAC	3 cut(s)	357, 377, 856
DdeI	CTNAG	6 cut(s)	145, 402, 489, 513, 558, 587
DpnI	GATC	3 cut(s)	99, 601, 639
DpnII	GATC	3 cut(s)	97, 599, 637
Eam1104I	CTCTTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	862
Ecl136II	GAGCTC	2 cut(s)	164, 539
Eco130I	CCWWGG	3 cut(s)	462, 542, 625
Eco24I	GRGCYC	2 cut(s)	166, 541
Eco31I	GGTCTC	2 cut(s)	13, 872
Eco32I	GATATC	2 cut(s)	473, 655
Eco47I	GGWCC	2 cut(s)	335, 546
Eco53kI	GAGCTC	2 cut(s)	164, 539
Eco57I	CTGAAG	2 cut(s)	209, 390
Eco81I	CCTNAGG	1 cut(s)	513
EcoICRI	GAGCTC	2 cut(s)	164, 539
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	2 cut(s)	473, 655
EcoT14I	CCWWGG	3 cut(s)	462, 542, 625
EcoT38I	GRGCYC	2 cut(s)	166, 541
ErhI	CCWWGG	3 cut(s)	462, 542, 625
FaeI	CATG	3 cut(s)	466, 546, 629
FaqI	GGGAC	2 cut(s)	97, 263
FatI	CATG	3 cut(s)	462, 542, 625
Fnu4HI	GCNGC	3 cut(s)	288, 291, 450
FokI	GGATG	2 cut(s)	479, 509
FriOI	GRGCYC	2 cut(s)	166, 541
Fsp4HI	GCNGC	3 cut(s)	288, 291, 450
FspBI	CTAG	2 cut(s)	30, 126
GluI	GCNGC	3 cut(s)	288, 291, 450
GsuI	CTGGAG	4 cut(s)	180, 204, 363, 423
HaeIII	GGCC	2 cut(s)	400, 868
HapII	CCGG	1 cut(s)	865
Hin1II	CATG	3 cut(s)	466, 546, 629
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	3 cut(s)	422, 508, 583
HpaII	CCGG	1 cut(s)	865
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188I	TCNGA	6 cut(s)	189, 370, 405, 588, 672, 935
Hpy188III	TCNNGA	4 cut(s)	30, 440, 512, 802
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	6 cut(s)	184, 525, 559, 624, 686, 721
HpyCH4III	ACNGT	2 cut(s)	63, 485
HpyCH4V	TGCA	6 cut(s)	365, 500, 611, 790, 815, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
HpyF3I	CTNAG	6 cut(s)	145, 402, 489, 513, 558, 587
Hsp92II	CATG	3 cut(s)	466, 546, 629
Kzo9I	GATC	3 cut(s)	97, 599, 637
LmnI	GCTCC	5 cut(s)	161, 223, 344, 536, 544
Lsp1109I	GCAGC	3 cut(s)	299, 302, 436
LweI	GCATC	3 cut(s)	247, 374, 487
MaeI	CTAG	2 cut(s)	30, 126
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	99, 601, 639
MboI	GATC	3 cut(s)	97, 599, 637
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	2 cut(s)	166, 541
MluCI	AATT	3 cut(s)	83, 307, 697
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	2 cut(s)	115, 613
MnlI	CCTC	9 cut(s)	37, 204, 223, 348, 411, 447, 508, 567, 760
MroXI	GAANNNNTTC	1 cut(s)	758
MspA1I	CMGCKG	3 cut(s)	109, 493, 562
MspI	CCGG	1 cut(s)	865
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	2 cut(s)	666, 907
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	170
NcoI	CCATGG	3 cut(s)	462, 542, 625
NdeII	GATC	3 cut(s)	97, 599, 637
NlaIII	CATG	3 cut(s)	466, 546, 629
PaqCI	CACCTGC	1 cut(s)	225
PctI	GAATGC	2 cut(s)	666, 907
PdmI	GAANNNNTTC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	422, 508
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	289, 292, 451
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp124BI	GAGCTC	2 cut(s)	166, 541
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	2 cut(s)	335, 546
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	2 cut(s)	493, 562
RsaI	GTAC	3 cut(s)	358, 378, 857
RsaNI	GTAC	3 cut(s)	357, 377, 856
SacI	GAGCTC	2 cut(s)	166, 541
SatI	GCNGC	3 cut(s)	288, 291, 450
Sau3AI	GATC	3 cut(s)	97, 599, 637
Sau96I	GGNCC	2 cut(s)	335, 546
ScaI	AGTACT	1 cut(s)	358
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	2 cut(s)	166, 541
SfaNI	GCATC	3 cut(s)	247, 374, 487
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	335, 546
SmlI	CTYRAG	2 cut(s)	569, 800
SmoI	CTYRAG	2 cut(s)	569, 800
Sse9I	AATT	3 cut(s)	83, 307, 697
SsiI	CCGC	3 cut(s)	107, 452, 847
SspMI	CTAG	2 cut(s)	30, 126
SstI	GAGCTC	2 cut(s)	166, 541
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	3 cut(s)	462, 542, 625
TaaI	ACNGT	2 cut(s)	63, 485
TaqI	TCGA	2 cut(s)	243, 927
TasI	AATT	3 cut(s)	83, 307, 697
TatI	WGTACW	2 cut(s)	356, 855
TfiI	GAWTC	2 cut(s)	422, 508
TseI	GCWGC	3 cut(s)	287, 290, 449
TspDTI	ATGAA	4 cut(s)	32, 402, 606, 751
VpaK11BI	GGWCC	2 cut(s)	335, 546
XapI	RAATTY	2 cut(s)	83, 307
XbaI	TCTAGA	1 cut(s)	29
XmnI	GAANNNNTTC	1 cut(s)	758
XspI	CTAG	2 cut(s)	30, 126
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.