Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Reverse (-)

14107314 .. 14115729

Gene Structure 8416 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGGAGGATAACTCACAATCAGCCCCCCCTCTTCTCATTTTTGTGCAATCTTTGGTCTTGCTGGTGCATTAGAAGAGTTGGACAACCCTTGGTTGCTAAAACTGGAGCTCTCTATGTTTTATGTTATCAAAATAGGGAAGCTCCAGTAGTAGGGGGCAGGTGTATAGAAGAAGTATACGATGCTTTGGCTGAACGCCTTGTTCCTACAGTAGCAGCAATGTCAAATCCATATTTGAATTCTTCATATCTTTGCTTGATTTGTGAGTCCCCTCATCATTCTACTCATGATTGTCACTTGGCTTCGCAATTTCCAGAATTTGTTGAGGAGCAAGTTAAAGCGGTTAGTTCTTATCAAAGGCCACCACGAAATGATCCTTACTCTACAACATATAATCCGGGTTGGCATAATCACTCAAATTTCACATGGAGAGATGGTGGAGGGTCCTCTAATACACCCCAAGGTGGTTCTCATTCTTATGGAGGGAATCAAAGCCCTAATTCTTCATCTTTTAGTCCCCACAATCCTGAGGAAGCTCATGCAAGAAGGGAAGCTCCATGGACCTTCAACCCTGAGCTACTACTCAAGTCTTTGAAGACTCTGAGAAGTCAGGGATTAGTATATGCACCTTCATTTGACCATGTTGTTGGAGAGCCAGTAGAAGACGATATCTTTGTGAGCATTCAGAATAAAGTGGTCATAGTAGAAGGAAATTATCAGTTCTTGGATAATGGGGTGTGGAAGGAAATATTGTCTATGTTTGATGAGAAACATGACTTGTTTGATCGTATTTTTCATTTCTGGATTGTAGGGAAGCCCCTAGATGTTGCTAAATGGCGGATTGAGTACAATGACCGGCGTAATGCAGAGACCATAATCAAATCAAACAAGAATGCTGATTTGATAATCAAGTTCCAATCGAGAGCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

310

Amino Acids

35.42

Weight (kDa)

6.49

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	177
AciI	CCGC	2 cut(s)	341, 838
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	3 cut(s)	238, 317, 418
AfaI	GTAC	1 cut(s)	848
AfiI	CCNNNNNNNGG	2 cut(s)	152, 464
AgsI	TTSAA	3 cut(s)	238, 568, 595
AluBI	AGCT	6 cut(s)	110, 143, 536, 554, 577, 926
AluI	AGCT	6 cut(s)	110, 143, 536, 554, 577, 926
Alw21I	GWGCWC	1 cut(s)	112
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	1 cut(s)	215
ApoI	RAATTY	3 cut(s)	238, 317, 418
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
AspS9I	GGNCC	2 cut(s)	444, 561
AsuC2I	CCSGG	1 cut(s)	399
AvaII	GGWCC	2 cut(s)	444, 561
AxyI	CCTNAGG	1 cut(s)	528
BanII	GRGCYC	1 cut(s)	112
BbsI	GAAGAC	2 cut(s)	602, 669
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	863
BfaI	CTAG	2 cut(s)	821, 931
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	150
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	2 cut(s)	444, 561
BmgT120I	GGNCC	2 cut(s)	444, 561
BmiI	GGNNCC	1 cut(s)	445
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	172
BpiI	GAAGAC	2 cut(s)	602, 669
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	126, 129
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	90, 460, 557
BsaXI	ACNNNNNCTCC	4 cut(s)	421, 451, 642, 672
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 464
Bse118I	RCCGGY	1 cut(s)	855
Bse1I	ACTGG	3 cut(s)	109, 146, 656
Bse21I	CCTNAGG	1 cut(s)	528
Bse3DI	GCAATG	1 cut(s)	225
BseDI	CCNNGG	3 cut(s)	90, 460, 557
BseLI	CCNNNNNNNGG	2 cut(s)	152, 464
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	519, 564, 593
BseNI	ACTGG	3 cut(s)	109, 146, 656
BseRI	GAGGAG	2 cut(s)	19, 341
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	398, 856
BslFI	GGGAC	2 cut(s)	253, 501
BslI	CCNNNNNNNGG	2 cut(s)	152, 464
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	2 cut(s)	253, 501
BsmI	GAATGC	2 cut(s)	681, 898
BsnI	GGCC	1 cut(s)	361
Bso31I	GGTCTC	1 cut(s)	863
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	373, 784
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	2 cut(s)	341, 838
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	3 cut(s)	520, 565, 594
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	863
BsrDI	GCAATG	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	855
BsrI	ACTGG	3 cut(s)	109, 146, 656
BssAI	RCCGGY	1 cut(s)	855
BssECI	CCNNGG	3 cut(s)	90, 460, 557
BssMI	GATC	2 cut(s)	373, 784
BssNAI	GTATAC	1 cut(s)	178
BssT1I	CCWWGG	3 cut(s)	90, 460, 557
Bst1107I	GTATAC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	2 cut(s)	38, 70
BstDEI	CTNAG	3 cut(s)	528, 573, 602
BstDSI	CCRYGG	1 cut(s)	557
BstKTI	GATC	2 cut(s)	376, 787
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	2 cut(s)	373, 784
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	227
BstV2I	GAAGAC	2 cut(s)	602, 669
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstZ17I	GTATAC	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	528
BsuRI	GGCC	1 cut(s)	361
BtgI	CCRYGG	1 cut(s)	557
BveI	ACCTGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	855
Cfr13I	GGNCC	2 cut(s)	444, 561
Csp6I	GTAC	1 cut(s)	847
CviAII	CATG	6 cut(s)	287, 426, 539, 558, 641, 773
CviQI	GTAC	1 cut(s)	847
DdeI	CTNAG	3 cut(s)	528, 573, 602
DpnI	GATC	2 cut(s)	375, 786
DpnII	GATC	2 cut(s)	373, 784
Eam1104I	CTCTTC	2 cut(s)	38, 70
EarI	CTCTTC	2 cut(s)	38, 70
EciI	GGCGGA	1 cut(s)	853
Ecl136II	GAGCTC	1 cut(s)	110
Eco130I	CCWWGG	3 cut(s)	90, 460, 557
Eco24I	GRGCYC	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	670
Eco47I	GGWCC	2 cut(s)	444, 561
Eco53kI	GAGCTC	1 cut(s)	110
Eco81I	CCTNAGG	1 cut(s)	528
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRI	GAATTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	670
EcoT14I	CCWWGG	3 cut(s)	90, 460, 557
EcoT38I	GRGCYC	1 cut(s)	112
ErhI	CCWWGG	3 cut(s)	90, 460, 557
FaeI	CATG	6 cut(s)	290, 429, 542, 561, 644, 776
FaqI	GGGAC	2 cut(s)	253, 501
FatI	CATG	6 cut(s)	286, 425, 538, 557, 640, 772
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	216
FspBI	CTAG	2 cut(s)	821, 931
GluI	GCNGC	1 cut(s)	216
GsuI	CTGGAG	2 cut(s)	126, 129
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	2 cut(s)	398, 856
Hin1II	CATG	6 cut(s)	290, 429, 542, 561, 644, 776
HinfI	GANTC	3 cut(s)	266, 487, 598
HpaII	CCGG	2 cut(s)	398, 856
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	603, 687
Hpy188III	TCNNGA	5 cut(s)	287, 314, 527, 802, 921
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	5 cut(s)	540, 574, 639, 701, 736
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	5 cut(s)	48, 69, 542, 626, 866
HpyF3I	CTNAG	3 cut(s)	528, 573, 602
Hsp92II	CATG	6 cut(s)	290, 429, 542, 561, 644, 776
Kzo9I	GATC	2 cut(s)	373, 784
LmnI	GCTCC	4 cut(s)	107, 148, 328, 559
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	2 cut(s)	821, 931
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	375, 786
MboI	GATC	2 cut(s)	373, 784
MboII	GAAGA	7 cut(s)	25, 87, 182, 234, 495, 607, 674
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	6 cut(s)	238, 308, 317, 418, 499, 712
MlyI	GAGTC	2 cut(s)	275, 592
MmeI	TCCRAC	2 cut(s)	61, 628
MnlI	CCTC	7 cut(s)	41, 282, 319, 434, 457, 476, 523
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	2 cut(s)	43, 477
MspI	CCGG	2 cut(s)	398, 856
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	2 cut(s)	681, 898
NciI	CCSGG	1 cut(s)	399
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	2 cut(s)	373, 784
NlaIII	CATG	6 cut(s)	290, 429, 542, 561, 644, 776
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	150
PctI	GAATGC	2 cut(s)	681, 898
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	2 cut(s)	274, 592
PpsI	GAGTC	2 cut(s)	274, 592
PpuMI	RGGWCCY	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	444, 561
PspPPI	RGGWCCY	1 cut(s)	444
RsaI	GTAC	1 cut(s)	848
RsaNI	GTAC	1 cut(s)	847
RseI	CAYNNNNRTG	2 cut(s)	43, 477
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	2 cut(s)	373, 784
Sau96I	GGNCC	2 cut(s)	444, 561
SchI	GAGTC	2 cut(s)	275, 592
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	112
SfaNI	GCATC	1 cut(s)	172
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	444, 561
SmiMI	CAYNNNNRTG	2 cut(s)	43, 477
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	6 cut(s)	238, 308, 317, 418, 499, 712
SsiI	CCGC	2 cut(s)	341, 838
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	2 cut(s)	821, 931
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	3 cut(s)	90, 460, 557
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	920
TasI	AATT	6 cut(s)	238, 308, 317, 418, 499, 712
TatI	WGTACW	1 cut(s)	846
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	4 cut(s)	234, 495, 621, 785
VpaK11BI	GGWCC	2 cut(s)	444, 561
XapI	RAATTY	3 cut(s)	238, 317, 418
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	2 cut(s)	821, 931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.