Rorug06G0204400

uridine kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
32623147 .. 32623879
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0204400.1

Sequence Viewer

Length: 204 bp
ATGCATAGCTGCTCTATGAGAATCAGAGTCTATGATCAGATAATGTGCTCTGTGAACTGTCACTTGGCTACACATTTGGAAGCTGTCAATCAACGCAATGCTGATTTGATCACATGTATCGAAATATGGTCTTCAATTGGTCATCTCTACTTAACACAAGAGCTGGTTGTTAAAGCTTCAGGTCTGAAGATGCTCAGACTTTGA

Protein Analysis

67

Amino Acids

7.66

Weight (kDa)

7.73

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03030 AT1G03030
fragaria_vesca FvH4_2g22511
malus_domestica MD05G1205700.v1.1
prunus_persica Prupe.8G232100_v2.0.a1
pyrus_communis pycom05g19180
rosa_chinensis RchiOBHm_Chr6g0289561
rosa_laevigata RLG00000009408 RLG00000012293
rosa_multiflora Rmu_sc0001527.1_g000059
rosa_roxburghii Rroxscaffold_7G00177860
rosa_rugosa Rorug06G0204400 Rorug06G0204500
rosa_samantha Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 162
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 4 cut(s) 9, 83, 163, 176
AluI AGCT 4 cut(s) 9, 83, 163, 176
Alw21I GWGCWC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 50
BclI TGATCA 2 cut(s) 34, 108
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
BmsI GCATC 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 123
Bse3DI GCAATG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 2 cut(s) 34, 108
BsrDI GCAATG 1 cut(s) 103
BssMI GATC 2 cut(s) 34, 108
Bst4CI ACNGT 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 194
BstKTI GATC 2 cut(s) 37, 111
BstMBI GATC 2 cut(s) 34, 108
BstNSI RCATGY 1 cut(s) 117
BstV2I GAAGAC 1 cut(s) 123
CviAII CATG 1 cut(s) 114
CviJI RGCY 5 cut(s) 9, 68, 83, 163, 176
CviKI_1 RGCY 5 cut(s) 9, 68, 83, 163, 176
DdeI CTNAG 1 cut(s) 194
DpnI GATC 2 cut(s) 36, 110
DpnII GATC 2 cut(s) 34, 108
Eco57I CTGAAG 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 117
FaiI YATR 5 cut(s) 6, 17, 33, 115, 127
FatI CATG 1 cut(s) 113
FbaI TGATCA 2 cut(s) 34, 108
Fnu4HI GCNGC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 10
FspEI CC 6 cut(s) 50, 62, 112, 123, 149, 165
GluI GCNGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 117
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 2 cut(s) 21, 27
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 4 cut(s) 26, 39, 186, 197
Hpy8I GTNNAC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 1 cut(s) 117
Ksp22I TGATCA 2 cut(s) 34, 108
Kzo9I GATC 2 cut(s) 34, 108
LpnPI CCDG 2 cut(s) 149, 165
LweI GCATC 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 59
MalI GATC 2 cut(s) 36, 110
MboI GATC 2 cut(s) 34, 108
MboII GAAGA 2 cut(s) 123, 199
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 1 cut(s) 135
MlyI GAGTC 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 152, 171
MunI CAATTG 1 cut(s) 135
NdeII GATC 2 cut(s) 34, 108
NlaIII CATG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 117
PciI ACATGT 1 cut(s) 113
PfeI GAWTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 35
PpsI GAGTC 1 cut(s) 35
PscI ACATGT 1 cut(s) 113
SaqAI TTAA 2 cut(s) 152, 171
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 34, 108
SchI GAGTC 1 cut(s) 36
SduI GDGCHC 1 cut(s) 50
SetI ASST 5 cut(s) 11, 85, 165, 178, 184
SfaNI GCATC 1 cut(s) 180
SgeI CNNG 5 cut(s) 76, 126, 170, 176, 192
Sse9I AATT 1 cut(s) 135
TaaI ACNGT 1 cut(s) 59
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 135
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 152, 171
Tru9I TTAA 2 cut(s) 152, 171
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 59
XceI RCATGY 1 cut(s) 117
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.