Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013394

Physical Location & Seq

Genomic Coordinates Forward (+)

32624157 .. 32625742

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0204500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAATGGGCAGGCTGTAAAGCAGGCGTATGTTAAGAACTCCTTGTTTCCACACTCTCTTTCTTCTTGTCTCAAAAAGCAGCAAAGGCAACTGTCCTTGGCATCCAAGTTGGGTGTGGATTCAGGCCTAAGATTCCATACAACGGCGAATTTCTTCTTCTGTTGTCTGAATGTGTCGACACATCCCCACGCATGCCATGCCAGGCACATGCCTGCGCAGAATTCACACAACGGAAACAAGTATTCTGTTGAGCAAAGTATTGTCACACAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004849 GO:0006139 GO:0006206 GO:0006213 GO:0006220 GO:0006221 GO:0006222 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009124 GO:0009129 GO:0009130 GO:0009156 GO:0009161 GO:0009163 GO:0009165 GO:0009173 GO:0009174 GO:0009218 GO:0009220 GO:0009259 GO:0009260 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0019693 GO:0034404 GO:0034641 GO:0034654 GO:0042455 GO:0043094 GO:0043097 GO:0043174 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0046049 GO:0046131 GO:0046132 GO:0046134 GO:0046390 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_18 PRK

Protein Analysis

91

Amino Acids

10.17

Weight (kDa)

9.88

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03030 AT1G03030
fragaria_vesca	FvH4_2g22511
malus_domestica	MD05G1205700.v1.1
prunus_persica	Prupe.8G232100_v2.0.a1
pyrus_communis	pycom05g19180
rosa_chinensis	RchiOBHm_Chr6g0289561
rosa_laevigata	RLG00000009408 RLG00000012293
rosa_multiflora	Rmu_sc0001527.1_g000059
rosa_roxburghii	Rroxscaffold_7G00177860
rosa_rugosa	Rorug06G0204400 Rorug06G0204500
rosa_samantha	Rh6AG316100 Rh6CG329100 Rh6DG314800
rosa_wichuraiana	Rw4G006720 Rw6G027260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	176
AcsI	RAATTY	2 cut(s)	148, 220
AfiI	CCNNNNNNNGG	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	200
AleI	CACNNNNGTG	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	2 cut(s)	148, 220
Asp700I	GAANNNNTTC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	74
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	202
BmsI	GCATC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	101, 181
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	126
BspANI	GGCC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	4 cut(s)	12, 24, 193, 213
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	101, 181
BstHHI	GCGC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 197
BstNI	CCWGG	1 cut(s)	202
BstNSI	RCATGY	2 cut(s)	195, 211
BstSCI	CCNGG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	101, 181
Cac8I	GCNNGC	4 cut(s)	12, 24, 193, 213
CfoI	GCGC	1 cut(s)	217
CviAII	CATG	3 cut(s)	192, 197, 208
CviJI	RGCY	2 cut(s)	14, 126
CviKI_1	RGCY	2 cut(s)	14, 126
DdeI	CTNAG	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	3 cut(s)	195, 200, 211
FaiI	YATR	5 cut(s)	30, 138, 193, 198, 209
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FatI	CATG	3 cut(s)	191, 196, 207
FblI	GTMKAC	1 cut(s)	176
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	2 cut(s)	88, 168
Fsp4HI	GCNGC	1 cut(s)	80
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	3 cut(s)	195, 200, 211
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HinfI	GANTC	2 cut(s)	119, 132
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	1 cut(s)	168
Hpy8I	GTNNAC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 197
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	3 cut(s)	195, 200, 211
HspAI	GCGC	1 cut(s)	215
LpnPI	CCDG	5 cut(s)	8, 108, 187, 214, 225
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	110
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	3 cut(s)	54, 145, 148
MluCI	AATT	2 cut(s)	148, 220
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	202
MvaI	CCWGG	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	85, 197
NlaIII	CATG	3 cut(s)	195, 200, 211
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	216
NspI	RCATGY	2 cut(s)	195, 211
OliI	CACNNNNGTG	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	119, 132
PkrI	GCNGC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	271
SalI	GTCGAC	1 cut(s)	175
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	202
SetI	ASST	1 cut(s)	275
SfaNI	GCATC	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	271
SphI	GCATGC	1 cut(s)	195
Sse9I	AATT	2 cut(s)	148, 220
SseBI	AGGCCT	1 cut(s)	126
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	176
TasI	AATT	2 cut(s)	148, 220
TfiI	GAWTC	2 cut(s)	119, 132
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	246
XapI	RAATTY	2 cut(s)	148, 220
XceI	RCATGY	2 cut(s)	195, 211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.