AT1G03110

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
749246 .. 751976
2731 bp
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UTR
Exon/CDS
Intron
AT1G03110.1

Sequence Viewer

Length: 1284 bp
ATGCAGGAAGAATCTCACATCGAAGAAGTTGAAATCCAAAACAAACTCGAAGTTGCTCCTGCATTGATTTCCGTTCATCCATCTCAGAAATCTGTCGCTGTCGCTGTCGGCTCGGATCTTCGTATTTTCGATCTTATAGAGAATTGCCCAGTTAGTTTGGTGGATGAATCTGATGGGCCTATCCGTAAGGAATCCATTAGAGCTATTCGGTACAGTACAAGTGGCAAGCTCTTTGTGTCCGCAGGCGATGACAAGCTTGTCAAGATTTGGTCCGCAGATTCTTGGCGCTGTCTTAACACAGTATGTTCTGAGAAAAGAGTTAGCGCAGTTGCTATAAGTAGTGATGACTCACATGTTTGCTATGCGGACAAGTTTGGTGTTGTATGGGTGATTGAGCTGGATGGGATCAATGACGGTAAAACTTTACCTAGTAAGAAGGGTGCGCTGCTGCTTTCCCATTATTGTAGTATTATTACTAGCCTGGAGTTTTCCCCAGATGGTAGATATATTCTTAGTGCAGACCGGGACTTTAAGATAAGGGTGACTGTTTTTCCCAAGAAGCCTCTAGAAGGGGCTCATGAAATACAGAGTTTTTGTCTTGGACATTCAGAGTTCATTACCTGCACAGCATTTGTCAGCACTCCAGAGCTTACTCAGGGATACCTCATGTCTGGAAGTGGAGATTCAACTGTTCGACTGTGGGACATTACATCTGGGTCTCTTCTCGACACATGTGAAGTTAGTACAGTGGCAGGACATGCAGAGTCTAATGAAAATGAGTCGCCGACCCAAGTCACAGTTACTGACATATGCGCTATCCCGAATTCGTCTCTTGCAGCAGTGGCAATTCAAAGCTTTCAAGGAATATTCTTGTTAAGCTGTGATTTGACAGCACATACTCTCTCTATCACAAAGGTGATAAAAATCCCTGGAGAAAGTTTCATTCCTACAAGTATAGCTGTAAGTGCATCTTCAAGATTACTATGGATGGTATCAGGAGCCTCAAACCTGCCTGGTTCGAACCATCCTGGTTTTTCAAGGGTTCGGGTCATCTCTTGCCTTGAGACCGAATCATCTTCAATACTTGAAGACGAGCAGATTCCAGGAGGGACCAAACTATTGGAGCAATTACAAGGTAAAGTTACAATAGAAGAGAGTGTAATGAGTGCTGCGGCAGAAGCTGTGAGAGCGGCAATGTCCAGCCTTTTGATGAAGAAGCAATACTCTGAAGAGAAGAGAGAGTTCAGAAAAAGAACCAGAAATGATAAGAAAACCACACGATGA

Protein Analysis

427

Amino Acids

46.44

Weight (kDa)

5.42

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 25 - 180 1e-05 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 28 - 248 1.8e-12 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 62 - 247 4.1e-19 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 62 - 120 8.2e-06 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 62 - 197 9.3e-06 WDR36/Utp21 second beta-propeller domain
WD40_WDHD1_1st PF24817 66 - 281 1.5e-14 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 66 - 183 9e-07 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 71 - 244 2.9e-14 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 75 - 243 7.8e-10 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 106 - 246 5.8e-09 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 158 - 245 5.7e-09 WDR5 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014488)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 257
Acc36I ACCTGC 2 cut(s) 629, 1017
AccBSI CCGCTC 1 cut(s) 1190
AciI CCGC 5 cut(s) 240, 273, 365, 1172, 1190
AclWI GGATC 2 cut(s) 123, 413
AcsI RAATTY 1 cut(s) 823
AcuI CTGAAG 1 cut(s) 1248
AfaI GTAC 3 cut(s) 212, 217, 745
AfiI CCNNNNNNNGG 1 cut(s) 569
AflIII ACRYGT 2 cut(s) 352, 731
AgsI TTSAA 8 cut(s) 32, 687, 851, 860, 975, 1038, 1080, 1088
AjnI CCWGG 5 cut(s) 480, 928, 1012, 1027, 1102
AleI CACNNNNGTG 1 cut(s) 914
AluBI AGCT 9 cut(s) 203, 229, 256, 397, 649, 855, 879, 959, 1181
AluI AGCT 9 cut(s) 203, 229, 256, 397, 649, 855, 879, 959, 1181
Alw26I GTCTC 3 cut(s) 723, 834, 1058
AlwI GGATC 2 cut(s) 123, 413
AlwNI CAGNNNCTG 2 cut(s) 803, 1181
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 4 cut(s) 445, 448, 836, 1169
ApoI RAATTY 1 cut(s) 823
AspLEI GCGC 4 cut(s) 288, 326, 445, 815
AspS9I GGNCC 3 cut(s) 176, 270, 1110
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 3 cut(s) 400, 553, 928
AsuII TTCGAA 1 cut(s) 1019
AvaII GGWCC 2 cut(s) 270, 1110
BanII GRGCYC 1 cut(s) 577
BarI GAAGNNNNNNTAC 2 cut(s) 1205, 1237
BbsI GAAGAC 1 cut(s) 1095
BbvI GCAGC 4 cut(s) 432, 435, 848, 1156
BccI CCATC 6 cut(s) 88, 167, 395, 491, 982, 1032
BciT130I CCWGG 5 cut(s) 482, 930, 1014, 1029, 1104
BciVI GTATCC 1 cut(s) 653
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 3 cut(s) 723, 834, 1058
BfaI CTAG 3 cut(s) 429, 477, 566
BfoI RGCGCY 1 cut(s) 289
BfuAI ACCTGC 2 cut(s) 629, 1017
BfuI GTATCC 1 cut(s) 653
BisI GCNGC 6 cut(s) 446, 449, 837, 1170, 1173, 1191
BlsI GCNGC 6 cut(s) 447, 450, 838, 1171, 1174, 1192
Bme1390I CCNGG 6 cut(s) 482, 524, 930, 1014, 1029, 1104
Bme18I GGWCC 2 cut(s) 270, 1110
BmgT120I GGNCC 3 cut(s) 176, 270, 1110
BmiI GGNNCC 2 cut(s) 1000, 1111
BmrFI CCNGG 6 cut(s) 482, 524, 930, 1014, 1029, 1104
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 977
BmuI ACTGGG 1 cut(s) 143
BoxI GACNNNNGTC 1 cut(s) 791
BpiI GAAGAC 1 cut(s) 1095
BpmI CTGGAG 3 cut(s) 503, 627, 951
Bpu14I TTCGAA 1 cut(s) 1019
BpuEI CTTGAG 1 cut(s) 1082
BpuMI CCSGG 1 cut(s) 524
BsaBI GATNNNNATC 1 cut(s) 923
BsaI GGTCTC 2 cut(s) 723, 1058
BsaJI CCNNGG 1 cut(s) 928
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 1200
Bse8I GATNNNNATC 1 cut(s) 923
BseBI CCWGG 5 cut(s) 482, 930, 1014, 1029, 1104
BseDI CCNNGG 1 cut(s) 928
BseGI GGATG 5 cut(s) 76, 169, 406, 993, 1024
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 1 cut(s) 1200
BseMII CTCAG 3 cut(s) 98, 300, 668
BseNI ACTGG 1 cut(s) 149
BseXI GCAGC 4 cut(s) 432, 435, 848, 1156
BsgI GTGCAG 2 cut(s) 537, 607
BshFI GGCC 1 cut(s) 178
BsiSI CCGG 1 cut(s) 523
BslFI GGGAC 3 cut(s) 539, 716, 1123
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 3 cut(s) 723, 834, 1058
BsmBI CGTCTC 1 cut(s) 834
BsmFI GGGAC 3 cut(s) 539, 716, 1123
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 2 cut(s) 723, 1058
Bsp119I TTCGAA 1 cut(s) 1019
Bsp1286I GDGCHC 1 cut(s) 577
Bsp143I GATC 3 cut(s) 115, 130, 405
BspACI CCGC 5 cut(s) 240, 273, 365, 1172, 1190
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 3 cut(s) 97, 301, 667
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 1000, 1111
BspMI ACCTGC 2 cut(s) 629, 1017
BspPI GGATC 2 cut(s) 123, 413
BspT104I TTCGAA 1 cut(s) 1019
BspTNI GGTCTC 2 cut(s) 723, 1058
BsrBI CCGCTC 1 cut(s) 1190
BsrDI GCAATG 1 cut(s) 1200
BsrI ACTGG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 928
BssMI GATC 3 cut(s) 115, 130, 405
Bst2UI CCWGG 5 cut(s) 482, 930, 1014, 1029, 1104
Bst4CI ACNGT 8 cut(s) 215, 301, 416, 547, 691, 699, 748, 799
Bst6I CTCTTC 4 cut(s) 726, 1146, 1224, 1229
BstAPI GCANNNNNTGC 1 cut(s) 758
BstBI TTCGAA 1 cut(s) 1019
BstC8I GCNNGC 2 cut(s) 227, 244
BstDEI CTNAG 4 cut(s) 84, 309, 512, 654
BstENI CCTNNNNNAGG 1 cut(s) 567
BstF5I GGATG 5 cut(s) 76, 169, 406, 993, 1024
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 4 cut(s) 288, 326, 445, 815
BstKTI GATC 3 cut(s) 118, 133, 408
BstMAI GTCTC 3 cut(s) 723, 834, 1058
BstMBI GATC 3 cut(s) 115, 130, 405
BstMWI GCNNNNNNNGC 5 cut(s) 758, 842, 965, 1178, 1187
BstNI CCWGG 5 cut(s) 482, 930, 1014, 1029, 1104
BstNSI RCATGY 3 cut(s) 356, 735, 761
BstPAI GACNNNNGTC 1 cut(s) 791
BstSCI CCNGG 6 cut(s) 480, 522, 928, 1012, 1027, 1102
BstV1I GCAGC 4 cut(s) 432, 435, 848, 1156
BstV2I GAAGAC 1 cut(s) 1095
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 115
BsuI GTATCC 1 cut(s) 653
BsuRI GGCC 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 5 cut(s) 76, 169, 406, 993, 1024
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 2 cut(s) 753, 846
BveI ACCTGC 2 cut(s) 629, 1017
Cac8I GCNNGC 2 cut(s) 227, 244
CaiI CAGNNNCTG 2 cut(s) 803, 1181
CciI TCATGA 1 cut(s) 577
CfoI GCGC 4 cut(s) 288, 326, 445, 815
Cfr13I GGNCC 3 cut(s) 176, 270, 1110
Csp6I GTAC 3 cut(s) 211, 216, 744
CviAII CATG 5 cut(s) 353, 578, 667, 732, 758
CviQI GTAC 3 cut(s) 211, 216, 744
DdeI CTNAG 4 cut(s) 84, 309, 512, 654
DpnI GATC 3 cut(s) 117, 132, 407
DpnII GATC 3 cut(s) 115, 130, 405
DrdI GACNNNNNNGTC 1 cut(s) 257
DseDI GACNNNNNNGTC 1 cut(s) 257
Eam1104I CTCTTC 4 cut(s) 726, 1146, 1224, 1229
EarI CTCTTC 4 cut(s) 726, 1146, 1224, 1229
Eco24I GRGCYC 1 cut(s) 577
Eco31I GGTCTC 2 cut(s) 723, 1058
Eco47I GGWCC 2 cut(s) 270, 1110
Eco57I CTGAAG 1 cut(s) 1248
EcoNI CCTNNNNNAGG 1 cut(s) 567
EcoRI GAATTC 1 cut(s) 823
EcoRII CCWGG 5 cut(s) 480, 928, 1012, 1027, 1102
EcoT38I GRGCYC 1 cut(s) 577
Esp3I CGTCTC 1 cut(s) 834
FaeI CATG 5 cut(s) 356, 581, 670, 735, 761
FalI AAGNNNNNCTT 2 cut(s) 955, 987
FaqI GGGAC 3 cut(s) 539, 716, 1123
FatI CATG 5 cut(s) 352, 577, 666, 731, 757
FauNDI CATATG 1 cut(s) 809
Fnu4HI GCNGC 6 cut(s) 446, 449, 837, 1170, 1173, 1191
FokI GGATG 5 cut(s) 63, 176, 413, 1000, 1011
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 6 cut(s) 446, 449, 837, 1170, 1173, 1191
FspBI CTAG 3 cut(s) 429, 477, 566
GlaI GCGC 4 cut(s) 287, 325, 444, 814
GluI GCNGC 6 cut(s) 446, 449, 837, 1170, 1173, 1191
GsuI CTGGAG 3 cut(s) 503, 627, 951
HaeII RGCGCY 1 cut(s) 289
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 523
HhaI GCGC 4 cut(s) 288, 326, 445, 815
Hin1II CATG 5 cut(s) 356, 581, 670, 735, 761
Hin6I GCGC 4 cut(s) 286, 324, 443, 813
HinP1I GCGC 4 cut(s) 286, 324, 443, 813
HindIII AAGCTT 2 cut(s) 254, 853
HpaII CCGG 1 cut(s) 523
HphI GGTGA 3 cut(s) 400, 553, 928
Hpy188I TCNGA 7 cut(s) 87, 115, 172, 310, 610, 1228, 1247
Hpy188III TCNNGA 9 cut(s) 262, 566, 578, 644, 672, 725, 820, 975, 996
HpyAV CCTTC 2 cut(s) 430, 563
HpyCH4III ACNGT 8 cut(s) 215, 301, 416, 547, 691, 699, 748, 799
HpyCH4V TGCA 7 cut(s) 4, 62, 518, 624, 761, 836, 968
HpyF10VI GCNNNNNNNGC 5 cut(s) 758, 842, 965, 1178, 1187
HpyF3I CTNAG 4 cut(s) 84, 309, 512, 654
Hsp92II CATG 5 cut(s) 356, 581, 670, 735, 761
HspAI GCGC 4 cut(s) 286, 324, 443, 813
Kzo9I GATC 3 cut(s) 115, 130, 405
LmnI GCTCC 3 cut(s) 61, 998, 1123
Lsp1109I GCAGC 4 cut(s) 432, 435, 848, 1156
LweI GCATC 1 cut(s) 977
MaeI CTAG 3 cut(s) 429, 477, 566
MaeIII GTNAC 4 cut(s) 541, 793, 799, 1141
MalI GATC 3 cut(s) 117, 132, 407
MbiI CCGCTC 1 cut(s) 1190
MboI GATC 3 cut(s) 115, 130, 405
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 577
MluCI AATT 4 cut(s) 142, 823, 846, 1127
MlyI GAGTC 3 cut(s) 341, 773, 788
MnlI CCTC 4 cut(s) 573, 674, 1012, 1100
MseI TTAA 3 cut(s) 294, 531, 875
MslI CAYNNNNRTG 1 cut(s) 914
MspI CCGG 1 cut(s) 523
MspR9I CCNGG 6 cut(s) 482, 524, 930, 1014, 1029, 1104
MvaI CCWGG 5 cut(s) 482, 930, 1014, 1029, 1104
MwoI GCNNNNNNNGC 5 cut(s) 758, 842, 965, 1178, 1187
NciI CCSGG 1 cut(s) 524
NdeI CATATG 1 cut(s) 809
NdeII GATC 3 cut(s) 115, 130, 405
NlaIII CATG 5 cut(s) 356, 581, 670, 735, 761
NlaIV GGNNCC 2 cut(s) 1000, 1111
NmuCI GTSAC 2 cut(s) 541, 793
NspI RCATGY 3 cut(s) 356, 735, 761
NspV TTCGAA 1 cut(s) 1019
OliI CACNNNNGTG 1 cut(s) 914
PagI TCATGA 1 cut(s) 577
PciI ACATGT 2 cut(s) 352, 731
PfeI GAWTC 7 cut(s) 11, 167, 191, 278, 683, 1070, 1099
PfoI TCCNGGA 1 cut(s) 1102
PkrI GCNGC 6 cut(s) 447, 450, 838, 1171, 1174, 1192
PleI GAGTC 3 cut(s) 341, 772, 787
PpsI GAGTC 3 cut(s) 341, 772, 787
PscI ACATGT 2 cut(s) 352, 731
PshAI GACNNNNGTC 1 cut(s) 791
Psp6I CCWGG 5 cut(s) 480, 928, 1012, 1027, 1102
PspGI CCWGG 5 cut(s) 480, 928, 1012, 1027, 1102
PspN4I GGNNCC 2 cut(s) 1000, 1111
PspPI GGNCC 3 cut(s) 176, 270, 1110
PstNI CAGNNNCTG 2 cut(s) 803, 1181
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 3 cut(s) 212, 217, 745
RsaNI GTAC 3 cut(s) 211, 216, 744
RseI CAYNNNNRTG 1 cut(s) 914
SaqAI TTAA 3 cut(s) 294, 531, 875
SatI GCNGC 6 cut(s) 446, 449, 837, 1170, 1173, 1191
Sau3AI GATC 3 cut(s) 115, 130, 405
Sau96I GGNCC 3 cut(s) 176, 270, 1110
SchI GAGTC 3 cut(s) 341, 773, 788
ScrFI CCNGG 6 cut(s) 482, 524, 930, 1014, 1029, 1104
SduI GDGCHC 1 cut(s) 577
SfaNI GCATC 1 cut(s) 977
SfuI TTCGAA 1 cut(s) 1019
SinI GGWCC 2 cut(s) 270, 1110
SmiMI CAYNNNNRTG 1 cut(s) 914
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
Sse9I AATT 4 cut(s) 142, 823, 846, 1127
SsiI CCGC 5 cut(s) 240, 273, 365, 1172, 1190
SspI AATATT 1 cut(s) 867
SspMI CTAG 3 cut(s) 429, 477, 566
StyD4I CCNGG 6 cut(s) 480, 522, 928, 1012, 1027, 1102
TaaI ACNGT 8 cut(s) 215, 301, 416, 547, 691, 699, 748, 799
TaqI TCGA 6 cut(s) 21, 48, 129, 694, 726, 1019
TaqII GACCGA 1 cut(s) 1082
TasI AATT 4 cut(s) 142, 823, 846, 1127
TatI WGTACW 2 cut(s) 215, 743
TauI GCSGC 2 cut(s) 1175, 1193
TfiI GAWTC 7 cut(s) 11, 167, 191, 278, 683, 1070, 1099
Tru1I TTAA 3 cut(s) 294, 531, 875
Tru9I TTAA 3 cut(s) 294, 531, 875
TscAI CASTG 2 cut(s) 753, 846
TseFI GTSAC 2 cut(s) 541, 793
TseI GCWGC 4 cut(s) 445, 448, 836, 1169
Tsp45I GTSAC 2 cut(s) 541, 793
TspDTI ATGAA 7 cut(s) 65, 180, 594, 604, 786, 931, 1226
TspGWI ACGGA 2 cut(s) 61, 173
TspRI CASTG 2 cut(s) 753, 846
VpaK11BI GGWCC 2 cut(s) 270, 1110
XagI CCTNNNNNAGG 1 cut(s) 567
XapI RAATTY 1 cut(s) 823
XbaI TCTAGA 1 cut(s) 565
XceI RCATGY 3 cut(s) 356, 735, 761
XspI CTAG 3 cut(s) 429, 477, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.