Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017853.1

Orthogroup ID

OG0014488

Physical Location & Seq

Genomic Coordinates Reverse (-)

12090 .. 16059

Gene Structure 3970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017853.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

atggaggacatgtacgaagaacccaacaaggacacggaggtcgctcctgcactcatcgcagtccacccgacccagaattcggttgcactcgcaatcgggtcggaccttcgcgtcttcaaccttattgggggttgtgcggtgtctttggtggaaaattctggtggggcacttcataaagattccataagagccattcggtacggagcaagtgggaagctatttgtgtctgctggtgatgataaacttgtcaagatatggtcaactgaatcttggcgttgcattagtaccgtgttctcagagaaaagagtgactgcagttgccataagcaatgatggttcctatgtttgttttgctgacaaatttggggttgtttgggttgtggatgtggatgtggagggctttgatggaaaccaagcgtctgctaacaaaaaggcagcacctatgctttctcactattgtagcatcatcacaagcctggagttttctcctgatggacgattttttgtcagtgctgatcgggatttcaaaattcgtgttactgtgtttcccaagaagcctctagatggagcccatgagatacaaagttttgcacttggtcatacagaatttgtttcctgccttgcctctgtttacactcaggaattcccccacggttttcttgtctctggaagtggtgattcaactgttcgcctatgggatatttcctcaggatctcttttagatacttgtgatattagagacaaggcaggaccttcggagtttaaaggaatagaagaagagtgctgttctgcagtaactgatttatgcaccatcccagatagtacacttgttgcggtggctgtacaaagtttgcaagggattatattgttgagatgtgatctttctgctcgaacactcaatgttgccaaggtggtatctatcaagggagatacatttattcctacaagcctggcaactagtgtatcctcgggattattgtggatggtaacaggtgcctctaacttgggtgatcttgaaagcacctctttggctcgtgtcagggttatctctgactttaagaaaaccagtcctgatgttgttcagcaagggccaactgttttggaagatgatgagacccctgggggcgagaaattactcgaaaaattgcagggaagagtgtccattgacgaaaaggttttctcgacagcagctgaggctttgaaaacatccatgagcaaattactaataaagaagcagtactctacagagagaagagaatttagaaagagaggtagaaatgataagaaactcaaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043527 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

432

Amino Acids

46.82

Weight (kDa)

5.57

Isoelectric Point (pI)

32.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03110
fragaria_vesca	FvH4_2g23260
malus_domestica	MD03G1261900.v1.1 MD11G1282600.v1.1
prunus_persica	Prupe.8G238200_v2.0.a1
pyrus_communis	pycom03g20960 pycom11g25030
rosa_chinensis	RchiOBHm_Chr6g0290561
rosa_laevigata	RLG00000012193 RLG00000012197
rosa_multiflora	Rmu_sc0017853.1_g000005 Rmu_sc0022570.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176890
rosa_rugosa	Rorug06G0213100
rosa_samantha	Rh6AG324200 Rh6DG324700
rosa_wichuraiana	Rw6G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	38, 110
AccB1I	GGYRCC	1 cut(s)	992
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	137, 833
AclWI	GGATC	1 cut(s)	718
AcsI	RAATTY	7 cut(s)	76, 154, 359, 528, 605, 641, 1256
AfaI	GTAC	6 cut(s)	14, 200, 286, 823, 843, 1238
AfiI	CCNNNNNNNGG	3 cut(s)	79, 127, 563
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	5 cut(s)	118, 526, 681, 1016, 1201
AhlI	ACTAGT	1 cut(s)	956
AjnI	CCWGG	3 cut(s)	474, 948, 1117
AluBI	AGCT	2 cut(s)	217, 1190
AluI	AGCT	2 cut(s)	217, 1190
Alw26I	GTCTC	3 cut(s)	667, 732, 1106
AlwI	GGATC	1 cut(s)	718
AlwNI	CAGNNNCTG	2 cut(s)	797, 1190
Ama87I	CYCGRG	1 cut(s)	967
AoxI	GGCC	1 cut(s)	1088
ApeKI	GCWGC	2 cut(s)	434, 1187
ApoI	RAATTY	7 cut(s)	76, 154, 359, 528, 605, 641, 1256
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	3 cut(s)	103, 749, 1088
AsuHPI	GGTGA	3 cut(s)	245, 686, 1019
AvaI	CYCGRG	1 cut(s)	967
AvaII	GGWCC	2 cut(s)	103, 749
AxyI	CCTNAGG	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	169
BaeI	ACNNNNGTAYC	2 cut(s)	945, 978
BanI	GGYRCC	1 cut(s)	992
BanII	GRGCYC	1 cut(s)	571
BauI	CACGAG	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	106
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	2 cut(s)	446, 1199
BccI	CCATC	6 cut(s)	326, 398, 485, 557, 818, 976
BcgI	CGANNNNNNTGC	4 cut(s)	81, 115, 735, 769
BciT130I	CCWGG	3 cut(s)	476, 950, 1119
BciVI	GTATCC	1 cut(s)	973
BcoDI	GTCTC	3 cut(s)	667, 732, 1106
BcuI	ACTAGT	1 cut(s)	956
BfaI	CTAG	2 cut(s)	560, 957
BfmI	CTRYAG	3 cut(s)	312, 789, 1242
BfuI	GTATCC	1 cut(s)	973
BisI	GCNGC	2 cut(s)	435, 1188
BlsI	GCNGC	2 cut(s)	436, 1189
BmcAI	AGTACT	1 cut(s)	1238
Bme1390I	CCNGG	3 cut(s)	476, 950, 1119
Bme18I	GGWCC	2 cut(s)	103, 749
BmeT110I	CYCGRG	1 cut(s)	967
BmgT120I	GGNCC	3 cut(s)	103, 749, 1088
BmiI	GGNNCC	3 cut(s)	337, 568, 994
BmrFI	CCNGG	3 cut(s)	476, 950, 1119
BmsI	GCATC	1 cut(s)	471
BpiI	GAAGAC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	497
Bpu10I	CCTNAGC	1 cut(s)	1191
BsaI	GGTCTC	1 cut(s)	1106
BsaJI	CCNNGG	5 cut(s)	649, 906, 966, 1117, 1118
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 127, 563
Bse1I	ACTGG	1 cut(s)	1065
Bse21I	CCTNAGG	1 cut(s)	706
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	3 cut(s)	476, 950, 1119
BseDI	CCNNGG	5 cut(s)	649, 906, 966, 1117, 1118
BseGI	GGATG	5 cut(s)	388, 394, 810, 987, 1205
BseLI	CCNNNNNNNGG	3 cut(s)	79, 127, 563
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	4 cut(s)	309, 650, 720, 1182
BseNI	ACTGG	1 cut(s)	1065
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	2 cut(s)	446, 1199
BsgI	GTGCAG	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	1090
BshNI	GGYRCC	1 cut(s)	992
BsiHKCI	CYCGRG	1 cut(s)	967
BslI	CCNNNNNNNGG	3 cut(s)	79, 127, 563
BsmAI	GTCTC	3 cut(s)	667, 732, 1106
BsnI	GGCC	1 cut(s)	1090
Bso31I	GGTCTC	1 cut(s)	1106
BsoBI	CYCGRG	1 cut(s)	967
Bsp1286I	GDGCHC	2 cut(s)	169, 571
Bsp1407I	TGTACA	1 cut(s)	841
Bsp143I	GATC	4 cut(s)	514, 710, 877, 1009
BspACI	CCGC	2 cut(s)	137, 833
BspANI	GGCC	1 cut(s)	1090
BspCNI	CTCAG	4 cut(s)	308, 649, 719, 1183
BspFNI	CGCG	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	337, 568, 994
BspMAI	CTGCAG	2 cut(s)	316, 793
BspPI	GGATC	1 cut(s)	718
BspT107I	GGYRCC	1 cut(s)	992
BspTNI	GGTCTC	1 cut(s)	1106
BsrDI	GCAATG	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	841
BsrI	ACTGG	1 cut(s)	1065
BssECI	CCNNGG	5 cut(s)	649, 906, 966, 1117, 1118
BssMI	GATC	4 cut(s)	514, 710, 877, 1009
BssSI	CACGAG	1 cut(s)	1032
BssT1I	CCWWGG	1 cut(s)	906
Bst2BI	CACGAG	1 cut(s)	1032
Bst2UI	CCWGG	3 cut(s)	476, 950, 1119
Bst4CI	ACNGT	6 cut(s)	289, 541, 653, 685, 1096, 1296
Bst6I	CTCTTC	3 cut(s)	771, 1147, 1246
BstAUI	TGTACA	1 cut(s)	841
BstDEI	CTNAG	4 cut(s)	295, 636, 706, 1191
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	5 cut(s)	388, 394, 810, 987, 1205
BstFNI	CGCG	1 cut(s)	111
BstKTI	GATC	4 cut(s)	517, 713, 880, 1012
BstMAI	GTCTC	3 cut(s)	667, 732, 1106
BstMBI	GATC	4 cut(s)	514, 710, 877, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 1193
BstNI	CCWGG	3 cut(s)	476, 950, 1119
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	3 cut(s)	474, 948, 1117
BstSFI	CTRYAG	3 cut(s)	312, 789, 1242
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	446, 1199
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	710
Bsu36I	CCTNAGG	1 cut(s)	706
BsuI	GTATCC	1 cut(s)	973
BsuRI	GGCC	1 cut(s)	1090
BtgI	CCRYGG	1 cut(s)	649
BtgZI	GCGATG	1 cut(s)	40
BtsCI	GGATG	5 cut(s)	388, 394, 810, 987, 1205
BtsIMutI	CAGTG	1 cut(s)	514
CaiI	CAGNNNCTG	2 cut(s)	797, 1190
Cfr13I	GGNCC	3 cut(s)	103, 749, 1088
CseI	GACGC	2 cut(s)	100, 405
Csp6I	GTAC	6 cut(s)	13, 199, 285, 822, 842, 1237
CviAII	CATG	3 cut(s)	10, 572, 1210
CviQI	GTAC	6 cut(s)	13, 199, 285, 822, 842, 1237
DdeI	CTNAG	4 cut(s)	295, 636, 706, 1191
DpnI	GATC	4 cut(s)	516, 712, 879, 1011
DpnII	GATC	4 cut(s)	514, 710, 877, 1009
DraI	TTTAAA	1 cut(s)	763
DrdI	GACNNNNNNGTC	2 cut(s)	38, 110
DseDI	GACNNNNNNGTC	2 cut(s)	38, 110
Eam1104I	CTCTTC	3 cut(s)	771, 1147, 1246
EarI	CTCTTC	3 cut(s)	771, 1147, 1246
Eco130I	CCWWGG	1 cut(s)	906
Eco24I	GRGCYC	1 cut(s)	571
Eco31I	GGTCTC	1 cut(s)	1106
Eco47I	GGWCC	2 cut(s)	103, 749
Eco81I	CCTNAGG	1 cut(s)	706
Eco88I	CYCGRG	1 cut(s)	967
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRI	GAATTC	2 cut(s)	76, 641
EcoRII	CCWGG	3 cut(s)	474, 948, 1117
EcoT14I	CCWWGG	1 cut(s)	906
EcoT38I	GRGCYC	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	906
FaeI	CATG	3 cut(s)	13, 575, 1213
FalI	AAGNNNNNCTT	2 cut(s)	1009, 1041
FatI	CATG	3 cut(s)	9, 571, 1209
Fnu4HI	GCNGC	2 cut(s)	435, 1188
FokI	GGATG	5 cut(s)	395, 401, 797, 994, 1192
FriOI	GRGCYC	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	435, 1188
FspBI	CTAG	2 cut(s)	560, 957
GluI	GCNGC	2 cut(s)	435, 1188
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	1090
HgaI	GACGC	2 cut(s)	100, 405
Hin1II	CATG	3 cut(s)	13, 575, 1213
HincII	GTYRAC	1 cut(s)	261
HindII	GTYRAC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	179, 266, 677
HphI	GGTGA	3 cut(s)	245, 686, 1019
Hpy166II	GTNNAC	4 cut(s)	64, 261, 631, 824
Hpy188I	TCNGA	4 cut(s)	103, 298, 757, 1051
Hpy8I	GTNNAC	4 cut(s)	64, 261, 631, 824
HpyAV	CCTTC	2 cut(s)	116, 762
HpyCH4III	ACNGT	6 cut(s)	289, 541, 653, 685, 1096, 1296
HpyCH4V	TGCA	9 cut(s)	50, 86, 279, 314, 590, 791, 807, 853, 1147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 1193
HpyF3I	CTNAG	4 cut(s)	295, 636, 706, 1191
Hsp92II	CATG	3 cut(s)	13, 575, 1213
Kzo9I	GATC	4 cut(s)	514, 710, 877, 1009
LmnI	GCTCC	3 cut(s)	49, 203, 566
Lsp1109I	GCAGC	2 cut(s)	446, 1199
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	2 cut(s)	560, 957
MaeIII	GTNAC	4 cut(s)	307, 535, 793, 985
MalI	GATC	4 cut(s)	516, 712, 879, 1011
MboI	GATC	4 cut(s)	514, 710, 877, 1009
MboII	GAAGA	7 cut(s)	29, 106, 785, 788, 1115, 1164, 1263
MflI	RGATCY	1 cut(s)	710
MhlI	GDGCHC	2 cut(s)	169, 571
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	2 cut(s)	762, 1056
MspA1I	CMGCKG	1 cut(s)	1190
MspR9I	CCNGG	3 cut(s)	476, 950, 1119
MvaI	CCWGG	3 cut(s)	476, 950, 1119
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	56, 1193
NdeII	GATC	4 cut(s)	514, 710, 877, 1009
NlaIII	CATG	3 cut(s)	13, 575, 1213
NlaIV	GGNNCC	3 cut(s)	337, 568, 994
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	13
PasI	CCCWGGG	1 cut(s)	1118
PciI	ACATGT	1 cut(s)	9
PfeI	GAWTC	3 cut(s)	179, 266, 677
PkrI	GCNGC	2 cut(s)	436, 1189
PpuMI	RGGWCCY	1 cut(s)	749
PscI	ACATGT	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	749
Psp6I	CCWGG	3 cut(s)	474, 948, 1117
PspGI	CCWGG	3 cut(s)	474, 948, 1117
PspN4I	GGNNCC	3 cut(s)	337, 568, 994
PspPI	GGNCC	3 cut(s)	103, 749, 1088
PspPPI	RGGWCCY	1 cut(s)	749
PstI	CTGCAG	2 cut(s)	316, 793
PstNI	CAGNNNCTG	2 cut(s)	797, 1190
PsuI	RGATCY	1 cut(s)	710
PvuII	CAGCTG	1 cut(s)	1190
RsaI	GTAC	6 cut(s)	14, 200, 286, 823, 843, 1238
RsaNI	GTAC	6 cut(s)	13, 199, 285, 822, 842, 1237
SaqAI	TTAA	2 cut(s)	762, 1056
SatI	GCNGC	2 cut(s)	435, 1188
Sau3AI	GATC	4 cut(s)	514, 710, 877, 1009
Sau96I	GGNCC	3 cut(s)	103, 749, 1088
ScaI	AGTACT	1 cut(s)	1238
ScrFI	CCNGG	3 cut(s)	476, 950, 1119
SduI	GDGCHC	2 cut(s)	169, 571
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	3 cut(s)	312, 789, 1242
SinI	GGWCC	2 cut(s)	103, 749
SpeI	ACTAGT	1 cut(s)	956
SsiI	CCGC	2 cut(s)	137, 833
SspMI	CTAG	2 cut(s)	560, 957
StyD4I	CCNGG	3 cut(s)	474, 948, 1117
StyI	CCWWGG	1 cut(s)	906
TaaI	ACNGT	6 cut(s)	289, 541, 653, 685, 1096, 1296
TaqI	TCGA	3 cut(s)	889, 1137, 1181
TatI	WGTACW	3 cut(s)	821, 841, 1236
TfiI	GAWTC	3 cut(s)	179, 266, 677
Tru1I	TTAA	2 cut(s)	762, 1056
Tru9I	TTAA	2 cut(s)	762, 1056
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	434, 1187
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	161
TspGWI	ACGGA	2 cut(s)	50, 216
TspRI	CASTG	1 cut(s)	514
VpaK11BI	GGWCC	2 cut(s)	103, 749
XapI	RAATTY	7 cut(s)	76, 154, 359, 528, 605, 641, 1256
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	2 cut(s)	560, 957
ZrmI	AGTACT	1 cut(s)	1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.