Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022570.1

Orthogroup ID

OG0014488

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1874

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022570.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 694 bp

atttgtttcctgccttgcctctgtttacactcaggaattcccccacggttttcttgtctctggaagtggtgattcaactgttcgcctatgggatatttcctcaggatctcttttagatacttgtgatattagagacaaggcaggaccttcggagtttaaaggaatagaagaagagtgctgttctgcagtaactgatttatgcaccatcccagatagtacacttgttgcggtggctgtacaaagtttgcaagggattatattgttgagatgtgatctttctgctcgaacactcaatgttgccaaggtggtatctatcaagggagatacatttattcctacaagcctggcaactagtgtatccttgggattattgtggatggtaacaggtgcctctaacttgggtgatcttgaaagcacctctttggctcgtgtcagggttatctctgactttaagaaaaccagtcctgatgttgttcagcaagggccaactgttttggaagatgatgagacccctgggggcgagaaattactcgaaaaattgcagggaagagtgtccattgacgaaaaggttttctcgacagcagctgaggctttgaaaacatccatgagcaaattactaataaagaagcagtactctacagagagaagagaatttagaaagagaggtagaaatgataagaaactcaaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043527 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

230

Amino Acids

24.95

Weight (kDa)

6.01

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03110
fragaria_vesca	FvH4_2g23260
malus_domestica	MD03G1261900.v1.1 MD11G1282600.v1.1
prunus_persica	Prupe.8G238200_v2.0.a1
pyrus_communis	pycom03g20960 pycom11g25030
rosa_chinensis	RchiOBHm_Chr6g0290561
rosa_laevigata	RLG00000012193 RLG00000012197
rosa_multiflora	Rmu_sc0017853.1_g000005 Rmu_sc0022570.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176890
rosa_rugosa	Rorug06G0213100
rosa_samantha	Rh6AG324200 Rh6DG324700
rosa_wichuraiana	Rw6G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	387
AciI	CCGC	1 cut(s)	228
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	36, 651
AfaI	GTAC	3 cut(s)	218, 238, 633
AgsI	TTSAA	3 cut(s)	76, 411, 596
AhlI	ACTAGT	1 cut(s)	351
AjnI	CCWGG	2 cut(s)	343, 512
AluBI	AGCT	1 cut(s)	585
AluI	AGCT	1 cut(s)	585
Alw26I	GTCTC	3 cut(s)	62, 127, 501
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	2 cut(s)	192, 585
AoxI	GGCC	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	2 cut(s)	36, 651
AspS9I	GGNCC	2 cut(s)	144, 483
AsuHPI	GGTGA	2 cut(s)	81, 414
AvaII	GGWCC	1 cut(s)	144
AxyI	CCTNAGG	1 cut(s)	101
BaeI	ACNNNNGTAYC	2 cut(s)	340, 373
BanI	GGYRCC	1 cut(s)	387
BauI	CACGAG	1 cut(s)	427
BbvCI	CCTCAGC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	594
BccI	CCATC	2 cut(s)	213, 371
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	2 cut(s)	345, 514
BciVI	GTATCC	1 cut(s)	368
BcoDI	GTCTC	3 cut(s)	62, 127, 501
BcuI	ACTAGT	1 cut(s)	351
BfaI	CTAG	1 cut(s)	352
BfmI	CTRYAG	2 cut(s)	184, 637
BfuI	GTATCC	1 cut(s)	368
BisI	GCNGC	1 cut(s)	583
BlsI	GCNGC	1 cut(s)	584
BmcAI	AGTACT	1 cut(s)	633
Bme1390I	CCNGG	2 cut(s)	345, 514
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	144, 483
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	2 cut(s)	345, 514
Bpu10I	CCTNAGC	1 cut(s)	586
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	5 cut(s)	44, 301, 361, 512, 513
Bse1I	ACTGG	1 cut(s)	460
Bse21I	CCTNAGG	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	345, 514
BseDI	CCNNGG	5 cut(s)	44, 301, 361, 512, 513
BseGI	GGATG	3 cut(s)	205, 382, 600
BseMII	CTCAG	3 cut(s)	45, 115, 577
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	594
BshFI	GGCC	1 cut(s)	485
BshNI	GGYRCC	1 cut(s)	387
BsmAI	GTCTC	3 cut(s)	62, 127, 501
BsnI	GGCC	1 cut(s)	485
Bso31I	GGTCTC	1 cut(s)	501
Bsp1407I	TGTACA	1 cut(s)	236
Bsp143I	GATC	3 cut(s)	105, 272, 404
BspACI	CCGC	1 cut(s)	228
BspANI	GGCC	1 cut(s)	485
BspCNI	CTCAG	3 cut(s)	44, 114, 578
BspLI	GGNNCC	1 cut(s)	389
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	1 cut(s)	387
BspTNI	GGTCTC	1 cut(s)	501
BsrGI	TGTACA	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	5 cut(s)	44, 301, 361, 512, 513
BssMI	GATC	3 cut(s)	105, 272, 404
BssSI	CACGAG	1 cut(s)	427
BssT1I	CCWWGG	2 cut(s)	301, 361
Bst2BI	CACGAG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	345, 514
Bst4CI	ACNGT	4 cut(s)	48, 80, 491, 691
Bst6I	CTCTTC	3 cut(s)	166, 542, 641
BstAUI	TGTACA	1 cut(s)	236
BstDEI	CTNAG	3 cut(s)	31, 101, 586
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	3 cut(s)	205, 382, 600
BstKTI	GATC	3 cut(s)	108, 275, 407
BstMAI	GTCTC	3 cut(s)	62, 127, 501
BstMBI	GATC	3 cut(s)	105, 272, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	588
BstNI	CCWGG	2 cut(s)	345, 514
BstSCI	CCNGG	2 cut(s)	343, 512
BstSFI	CTRYAG	2 cut(s)	184, 637
BstV1I	GCAGC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	101
BsuI	GTATCC	1 cut(s)	368
BsuRI	GGCC	1 cut(s)	485
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	205, 382, 600
CaiI	CAGNNNCTG	2 cut(s)	192, 585
Cfr13I	GGNCC	2 cut(s)	144, 483
Csp6I	GTAC	3 cut(s)	217, 237, 632
CviAII	CATG	1 cut(s)	605
CviJI	RGCY	6 cut(s)	234, 343, 426, 485, 585, 591
CviKI_1	RGCY	6 cut(s)	234, 343, 426, 485, 585, 591
CviQI	GTAC	3 cut(s)	217, 237, 632
DdeI	CTNAG	3 cut(s)	31, 101, 586
DpnI	GATC	3 cut(s)	107, 274, 406
DpnII	GATC	3 cut(s)	105, 272, 404
DraI	TTTAAA	1 cut(s)	158
Eam1104I	CTCTTC	3 cut(s)	166, 542, 641
EarI	CTCTTC	3 cut(s)	166, 542, 641
Eco130I	CCWWGG	2 cut(s)	301, 361
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	144
Eco81I	CCTNAGG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	343, 512
EcoT14I	CCWWGG	2 cut(s)	301, 361
ErhI	CCWWGG	2 cut(s)	301, 361
FaeI	CATG	1 cut(s)	608
FaiI	YATR	4 cut(s)	89, 200, 258, 606
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FatI	CATG	1 cut(s)	604
Fnu4HI	GCNGC	1 cut(s)	583
FokI	GGATG	3 cut(s)	192, 389, 587
Fsp4HI	GCNGC	1 cut(s)	583
FspBI	CTAG	1 cut(s)	352
GluI	GCNGC	1 cut(s)	583
HaeIII	GGCC	1 cut(s)	485
Hin1II	CATG	1 cut(s)	608
HinfI	GANTC	1 cut(s)	72
HphI	GGTGA	2 cut(s)	81, 414
Hpy166II	GTNNAC	2 cut(s)	26, 219
Hpy188I	TCNGA	2 cut(s)	152, 446
Hpy188III	TCNNGA	6 cut(s)	33, 61, 103, 408, 465, 575
Hpy8I	GTNNAC	2 cut(s)	26, 219
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	4 cut(s)	48, 80, 491, 691
HpyCH4V	TGCA	4 cut(s)	186, 202, 248, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	588
HpyF3I	CTNAG	3 cut(s)	31, 101, 586
Hsp92II	CATG	1 cut(s)	608
Kzo9I	GATC	3 cut(s)	105, 272, 404
Lsp1109I	GCAGC	1 cut(s)	594
MaeI	CTAG	1 cut(s)	352
MaeIII	GTNAC	2 cut(s)	188, 380
MalI	GATC	3 cut(s)	107, 274, 406
MboI	GATC	3 cut(s)	105, 272, 404
MboII	GAAGA	5 cut(s)	180, 183, 510, 559, 658
MflI	RGATCY	1 cut(s)	105
MluCI	AATT	5 cut(s)	36, 525, 537, 612, 651
MnlI	CCTC	6 cut(s)	29, 110, 401, 428, 581, 657
MseI	TTAA	2 cut(s)	157, 451
MspA1I	CMGCKG	1 cut(s)	585
MspR9I	CCNGG	2 cut(s)	345, 514
MvaI	CCWGG	2 cut(s)	345, 514
MwoI	GCNNNNNNNGC	1 cut(s)	588
NdeII	GATC	3 cut(s)	105, 272, 404
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	1 cut(s)	389
PasI	CCCWGGG	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	343, 512
PspGI	CCWGG	2 cut(s)	343, 512
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	2 cut(s)	144, 483
PspPPI	RGGWCCY	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	188
PstNI	CAGNNNCTG	2 cut(s)	192, 585
PsuI	RGATCY	1 cut(s)	105
PvuII	CAGCTG	1 cut(s)	585
RsaI	GTAC	3 cut(s)	218, 238, 633
RsaNI	GTAC	3 cut(s)	217, 237, 632
SaqAI	TTAA	2 cut(s)	157, 451
SatI	GCNGC	1 cut(s)	583
Sau3AI	GATC	3 cut(s)	105, 272, 404
Sau96I	GGNCC	2 cut(s)	144, 483
ScaI	AGTACT	1 cut(s)	633
ScrFI	CCNGG	2 cut(s)	345, 514
SetI	ASST	7 cut(s)	149, 307, 389, 420, 571, 587, 668
SfcI	CTRYAG	2 cut(s)	184, 637
SinI	GGWCC	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	351
Sse9I	AATT	5 cut(s)	36, 525, 537, 612, 651
SsiI	CCGC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	2 cut(s)	343, 512
StyI	CCWWGG	2 cut(s)	301, 361
TaaI	ACNGT	4 cut(s)	48, 80, 491, 691
TaqI	TCGA	3 cut(s)	284, 532, 576
TasI	AATT	5 cut(s)	36, 525, 537, 612, 651
TatI	WGTACW	3 cut(s)	216, 236, 631
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	157, 451
Tru9I	TTAA	2 cut(s)	157, 451
TseI	GCWGC	1 cut(s)	582
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	2 cut(s)	36, 651
XspI	CTAG	1 cut(s)	352
ZrmI	AGTACT	1 cut(s)	633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.