MD03G1261900.v1.1

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
34798282 .. 34801135
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1261900.v1.1.491

Sequence Viewer

Length: 1236 bp
ATGGAGGACACTCCGATGGAAAACGGAGAGACCAACGAGGATTCTGAGGTGGCCCCAGCCTTAATTTCCGTCCACCCTACCCAAAGCTCCGTCGCAGTCGCAGTCGCCGTCGGGTCGGACCTCCGCGTCTTCGACCTCCGTGGGGGTTGTGCGGTTTCTTTGGTAGATAATTCTGGTTGTCCTCTTCATAAGGATTGGATAAGAACCATTCGCTACGGAGCAGACGGGAAGCTTTTTGTGTCGGCTGGTGATGATAAAACCGTCAAGATTTGGTCGACTGAATCTTGGCGCTGCATTACTACTGTGTGCTCAGAGAAAAGAGTGAGTGCAGTTGCCATAAGCAGTGATGGCTCCTACGTTTGTTTTGCCGACAAGTTTGGGGTTGTTTGGGTTGTGGATGTGGATTTGTCTGATGGAAATCAAGCTTTTGTTGATAAGAAGGCAGCACCTTTGCTTTCTCACTATTGTAGCATCATAACAAGCTTGGAATTTTCTCCAGATGGACGATTTTTCGTTAGTGCTGACCGGGATTTCAAAATTCGAGTTACAGTGTTTCCCAAGAAGCCTTTAGATGAAGCTCACGAGATACAAAGTGTCTCCCTTGGTCATACAGAGTTTGTTTCATGCCTTGCCTTTGTTTGCACTCAGGAATGCCCCCAGGGGTTTCTTGTCTCTGGAAGTGGTGATTCGACAGATATTTCCTCAGGATCTCTCCTAAACACATGTAATATCAGAGAAAAGGCAGGACTTTTAGAGTCCAATGGAATAGAAGAGTGCCATGGGGCCGTTACAGATTTGTGCACCATCCCAGATAGCACCCTTGTTGCAGTGGCTGTTCAAAGGCAAGTGGTTTCTATCGAGGGAGATGCCTTTATTCCTACAAGCTTGGGAACTAGCTTATCGTCAGGATTATTGTGGATTGTAACGGGTGCCTCTAACTTGCATGATTCTCAATACCCTTGTATGGCCCGTGTCAAGGCTATCTCTGGAGTTAAGGAAACCAGTCCTGATTCAGTTGGGCATGGACCAATTGTTTTGAAAGACGCTGAGATCCCCGGAGGTGAGAAATTGCTCCAGAAGCTGCAGGGAAGAGTGTCGTTTGACGATAACTTTTTCTTGACAGCTGCTGAGGCTTTGAAAACATCCATGAGCAATTTGTTAATAAAAAAGCAGTACTCTACGGAGAATCGAGAGTTTAGAAAGAGAACCAGAAATGATAAGAAACTCAAGCAGTGA

Protein Analysis

412

Amino Acids

44.39

Weight (kDa)

5.22

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 24 - 182 4.2e-09 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 31 - 229 4.3e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR5 PF25175 32 - 124 1.2e-08 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 41 - 231 6.1e-18 THOC3 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 42 - 195 3.7e-08 WDR36/Utp21 second beta-propeller domain
WD40 PF00400 63 - 92 6.8e-06 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 63 - 121 2.8e-06 WDR3 first beta-propeller domain
WD40_WDHD1_1st PF24817 63 - 283 3.9e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 67 - 207 9.6e-08 WDR3 second beta-propeller domain
Beta-prop_EML_2 PF23414 77 - 212 1e-11 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014488)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 929
AccI GTMKAC 1 cut(s) 275
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 152
AclWI GGATC 2 cut(s) 715, 1045
AcsI RAATTY 2 cut(s) 488, 537
AfaI GTAC 1 cut(s) 1175
AfiI CCNNNNNNNGG 3 cut(s) 142, 964, 976
AflIII ACRYGT 1 cut(s) 722
AgsI TTSAA 4 cut(s) 535, 839, 1039, 1138
AjnI CCWGG 1 cut(s) 657
AluBI AGCT 9 cut(s) 87, 232, 425, 483, 578, 885, 897, 1081, 1124
AluI AGCT 9 cut(s) 87, 232, 425, 483, 578, 885, 897, 1081, 1124
Alw21I GWGCWC 2 cut(s) 311, 803
Alw26I GTCTC 3 cut(s) 23, 601, 676
Alw44I GTGCAC 1 cut(s) 799
AlwI GGATC 2 cut(s) 715, 1045
AlwNI CAGNNNCTG 3 cut(s) 833, 1081, 1127
AoxI GGCC 3 cut(s) 51, 783, 966
ApaLI GTGCAC 1 cut(s) 799
ApeKI GCWGC 4 cut(s) 291, 443, 1081, 1124
ApoI RAATTY 2 cut(s) 488, 537
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 5 cut(s) 52, 118, 783, 967, 1025
AsuC2I CCSGG 2 cut(s) 527, 1056
AsuHPI GGTGA 3 cut(s) 260, 695, 1073
AvaII GGWCC 2 cut(s) 118, 1025
AxyI CCTNAGG 1 cut(s) 703
BaeGI GKGCMC 1 cut(s) 803
BanI GGYRCC 1 cut(s) 929
BauI CACGAG 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 2 cut(s) 311, 803
BbvCI CCTCAGC 1 cut(s) 1128
BbvI GCAGC 4 cut(s) 278, 455, 1068, 1111
BccI CCATC 5 cut(s) 10, 341, 407, 494, 812
BceAI ACGGC 2 cut(s) 92, 770
BcgI CGANNNNNNTGC 2 cut(s) 848, 882
BciT130I CCWGG 1 cut(s) 659
BcnI CCSGG 2 cut(s) 527, 1056
BcoDI GTCTC 3 cut(s) 23, 601, 676
BfaI CTAG 1 cut(s) 894
BfmI CTRYAG 1 cut(s) 1082
BfoI RGCGCY 1 cut(s) 292
BisI GCNGC 4 cut(s) 292, 444, 1082, 1125
BlsI GCNGC 4 cut(s) 293, 445, 1083, 1126
BmcAI AGTACT 1 cut(s) 1175
Bme1390I CCNGG 3 cut(s) 527, 659, 1056
Bme18I GGWCC 2 cut(s) 118, 1025
BmgT120I GGNCC 5 cut(s) 52, 118, 783, 967, 1025
BmiI GGNNCC 4 cut(s) 54, 352, 784, 931
BmrFI CCNGG 3 cut(s) 527, 659, 1056
BmsI GCATC 2 cut(s) 480, 856
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 3 cut(s) 480, 1008, 1058
Bpu10I CCTNAGC 1 cut(s) 1128
BpuEI CTTGAG 1 cut(s) 1211
BpuMI CCSGG 2 cut(s) 527, 1056
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 6 cut(s) 139, 601, 657, 658, 778, 1054
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 964, 976
Bse1I ACTGG 1 cut(s) 1002
Bse21I CCTNAGG 1 cut(s) 703
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 659
BseDI CCNNGG 6 cut(s) 139, 601, 657, 658, 778, 1054
BseGI GGATG 3 cut(s) 403, 804, 1142
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 3 cut(s) 142, 964, 976
BseMII CTCAG 6 cut(s) 36, 324, 659, 717, 1038, 1119
BseNI ACTGG 1 cut(s) 1002
BseSI GKGCMC 1 cut(s) 803
BseXI GCAGC 4 cut(s) 278, 455, 1068, 1111
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 348
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 3 cut(s) 53, 785, 968
BshNI GGYRCC 1 cut(s) 929
BsiHKAI GWGCWC 2 cut(s) 311, 803
BsiSI CCGG 2 cut(s) 526, 1056
BslI CCNNNNNNNGG 3 cut(s) 142, 964, 976
BsmAI GTCTC 3 cut(s) 23, 601, 676
BsmI GAATGC 1 cut(s) 656
BsnI GGCC 3 cut(s) 53, 785, 968
Bso31I GGTCTC 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 311, 803
Bsp143I GATC 2 cut(s) 707, 1050
Bsp19I CCATGG 1 cut(s) 778
BspACI CCGC 2 cut(s) 124, 152
BspANI GGCC 3 cut(s) 53, 785, 968
BspCNI CTCAG 6 cut(s) 37, 323, 658, 716, 1039, 1120
BspFNI CGCG 1 cut(s) 126
BspLI GGNNCC 4 cut(s) 54, 352, 784, 931
BspMAI CTGCAG 1 cut(s) 1086
BspPI GGATC 2 cut(s) 715, 1045
BspT107I GGYRCC 1 cut(s) 929
BspTNI GGTCTC 1 cut(s) 23
BsrI ACTGG 1 cut(s) 1002
BssECI CCNNGG 6 cut(s) 139, 601, 657, 658, 778, 1054
BssMI GATC 2 cut(s) 707, 1050
BssSI CACGAG 1 cut(s) 581
BssT1I CCWWGG 2 cut(s) 601, 778
Bst2BI CACGAG 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 262, 304, 550
Bst6I CTCTTC 3 cut(s) 189, 765, 1084
BstDEI CTNAG 6 cut(s) 45, 310, 645, 703, 1047, 1128
BstDSI CCRYGG 2 cut(s) 139, 778
BstF5I GGATG 3 cut(s) 403, 804, 1142
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 2 cut(s) 710, 1053
BstMAI GTCTC 3 cut(s) 23, 601, 676
BstMBI GATC 2 cut(s) 707, 1050
BstMWI GCNNNNNNNGC 3 cut(s) 348, 1078, 1130
BstNI CCWGG 1 cut(s) 659
BstNSI RCATGY 1 cut(s) 726
BstSCI CCNGG 3 cut(s) 525, 657, 1054
BstSFI CTRYAG 1 cut(s) 1082
BstSLI GKGCMC 1 cut(s) 803
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 4 cut(s) 278, 455, 1068, 1111
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 2 cut(s) 707, 1050
BstYI RGATCY 2 cut(s) 707, 1050
Bsu36I CCTNAGG 1 cut(s) 703
BsuRI GGCC 3 cut(s) 53, 785, 968
BtgI CCRYGG 2 cut(s) 139, 778
BtsCI GGATG 3 cut(s) 403, 804, 1142
BtsI GCAGTG 2 cut(s) 349, 834
BtsIMutI CAGTG 3 cut(s) 349, 555, 834
CaiI CAGNNNCTG 3 cut(s) 833, 1081, 1127
CfoI GCGC 1 cut(s) 291
Cfr13I GGNCC 5 cut(s) 52, 118, 783, 967, 1025
CseI GACGC 2 cut(s) 115, 1052
Csp6I GTAC 1 cut(s) 1174
CviAII CATG 6 cut(s) 624, 723, 779, 944, 1022, 1147
CviQI GTAC 1 cut(s) 1174
DdeI CTNAG 6 cut(s) 45, 310, 645, 703, 1047, 1128
DpnI GATC 2 cut(s) 709, 1052
DpnII GATC 2 cut(s) 707, 1050
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eam1104I CTCTTC 3 cut(s) 189, 765, 1084
EarI CTCTTC 3 cut(s) 189, 765, 1084
Eco130I CCWWGG 2 cut(s) 601, 778
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 118, 1025
Eco81I CCTNAGG 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 2 cut(s) 601, 778
ErhI CCWWGG 2 cut(s) 601, 778
FaeI CATG 6 cut(s) 627, 726, 782, 947, 1025, 1150
FatI CATG 6 cut(s) 623, 722, 778, 943, 1021, 1146
FblI GTMKAC 1 cut(s) 275
Fnu4HI GCNGC 4 cut(s) 292, 444, 1082, 1125
FokI GGATG 3 cut(s) 410, 791, 1129
Fsp4HI GCNGC 4 cut(s) 292, 444, 1082, 1125
FspBI CTAG 1 cut(s) 894
GlaI GCGC 1 cut(s) 290
GluI GCNGC 4 cut(s) 292, 444, 1082, 1125
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 3 cut(s) 480, 1008, 1058
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 3 cut(s) 53, 785, 968
HapII CCGG 2 cut(s) 526, 1056
HgaI GACGC 2 cut(s) 115, 1052
HhaI GCGC 1 cut(s) 291
Hin1II CATG 6 cut(s) 627, 726, 782, 947, 1025, 1150
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HindIII AAGCTT 4 cut(s) 230, 423, 481, 883
HinfI GANTC 7 cut(s) 41, 281, 686, 755, 947, 1010, 1186
HpaII CCGG 2 cut(s) 526, 1056
HphI GGTGA 3 cut(s) 260, 695, 1073
Hpy166II GTNNAC 3 cut(s) 73, 276, 801
Hpy188I TCNGA 6 cut(s) 15, 46, 118, 313, 412, 734
Hpy8I GTNNAC 3 cut(s) 73, 276, 801
Hpy99I CGWCG 2 cut(s) 95, 113
HpyAV CCTTC 1 cut(s) 433
HpyCH4III ACNGT 3 cut(s) 262, 304, 550
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 7 cut(s) 294, 329, 642, 801, 827, 943, 1084
HpyF10VI GCNNNNNNNGC 3 cut(s) 348, 1078, 1130
HpyF3I CTNAG 6 cut(s) 45, 310, 645, 703, 1047, 1128
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 6 cut(s) 627, 726, 782, 947, 1025, 1150
HspAI GCGC 1 cut(s) 289
Kzo9I GATC 2 cut(s) 707, 1050
LmnI GCTCC 4 cut(s) 92, 218, 356, 1077
Lsp1109I GCAGC 4 cut(s) 278, 455, 1068, 1111
LweI GCATC 2 cut(s) 480, 856
MaeI CTAG 1 cut(s) 894
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 3 cut(s) 544, 787, 922
MalI GATC 2 cut(s) 709, 1052
MboI GATC 2 cut(s) 707, 1050
MboII GAAGA 4 cut(s) 121, 176, 782, 1101
MfeI CAATTG 1 cut(s) 1029
MflI RGATCY 2 cut(s) 707, 1050
MhlI GDGCHC 2 cut(s) 311, 803
MluCI AATT 7 cut(s) 63, 169, 488, 537, 1029, 1067, 1153
MlyI GAGTC 1 cut(s) 764
MmeI TCCRAC 1 cut(s) 96
MseI TTAA 3 cut(s) 62, 993, 1160
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 1124
MspI CCGG 2 cut(s) 526, 1056
MspR9I CCNGG 3 cut(s) 527, 659, 1056
MunI CAATTG 1 cut(s) 1029
Mva1269I GAATGC 1 cut(s) 656
MvaI CCWGG 1 cut(s) 659
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 348, 1078, 1130
NciI CCSGG 2 cut(s) 527, 1056
NcoI CCATGG 1 cut(s) 778
NdeII GATC 2 cut(s) 707, 1050
NlaIII CATG 6 cut(s) 627, 726, 782, 947, 1025, 1150
NlaIV GGNNCC 4 cut(s) 54, 352, 784, 931
NspI RCATGY 1 cut(s) 726
PasI CCCWGGG 1 cut(s) 658
PciI ACATGT 1 cut(s) 722
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 656
PfeI GAWTC 6 cut(s) 41, 281, 686, 947, 1010, 1186
PkrI GCNGC 4 cut(s) 293, 445, 1083, 1126
PleI GAGTC 1 cut(s) 763
PpsI GAGTC 1 cut(s) 763
PscI ACATGT 1 cut(s) 722
Psp6I CCWGG 1 cut(s) 657
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 657
PspN4I GGNNCC 4 cut(s) 54, 352, 784, 931
PspPI GGNCC 5 cut(s) 52, 118, 783, 967, 1025
PstI CTGCAG 1 cut(s) 1086
PstNI CAGNNNCTG 3 cut(s) 833, 1081, 1127
PsuI RGATCY 2 cut(s) 707, 1050
PvuII CAGCTG 1 cut(s) 1124
RsaI GTAC 1 cut(s) 1175
RsaNI GTAC 1 cut(s) 1174
RseI CAYNNNNRTG 1 cut(s) 14
SalI GTCGAC 1 cut(s) 274
SaqAI TTAA 3 cut(s) 62, 993, 1160
SatI GCNGC 4 cut(s) 292, 444, 1082, 1125
Sau3AI GATC 2 cut(s) 707, 1050
Sau96I GGNCC 5 cut(s) 52, 118, 783, 967, 1025
ScaI AGTACT 1 cut(s) 1175
SchI GAGTC 1 cut(s) 764
ScrFI CCNGG 3 cut(s) 527, 659, 1056
SduI GDGCHC 2 cut(s) 311, 803
SfaNI GCATC 2 cut(s) 480, 856
SfcI CTRYAG 1 cut(s) 1082
SinI GGWCC 2 cut(s) 118, 1025
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 1 cut(s) 1226
SmoI CTYRAG 1 cut(s) 1226
Sse9I AATT 7 cut(s) 63, 169, 488, 537, 1029, 1067, 1153
SsiI CCGC 2 cut(s) 124, 152
SspMI CTAG 1 cut(s) 894
StyD4I CCNGG 3 cut(s) 525, 657, 1054
StyI CCWWGG 2 cut(s) 601, 778
TaaI ACNGT 3 cut(s) 262, 304, 550
TaiI ACGT 1 cut(s) 360
TaqI TCGA 6 cut(s) 132, 275, 541, 689, 858, 1189
TasI AATT 7 cut(s) 63, 169, 488, 537, 1029, 1067, 1153
TatI WGTACW 1 cut(s) 1173
TfiI GAWTC 6 cut(s) 41, 281, 686, 947, 1010, 1186
Tru1I TTAA 3 cut(s) 62, 993, 1160
Tru9I TTAA 3 cut(s) 62, 993, 1160
TscAI CASTG 3 cut(s) 349, 555, 834
TseI GCWGC 4 cut(s) 291, 443, 1081, 1124
TspDTI ATGAA 3 cut(s) 176, 588, 612
TspGWI ACGGA 6 cut(s) 39, 58, 79, 128, 231, 1196
TspRI CASTG 3 cut(s) 349, 555, 834
VneI GTGCAC 1 cut(s) 799
VpaK11BI GGWCC 2 cut(s) 118, 1025
XapI RAATTY 2 cut(s) 488, 537
XceI RCATGY 1 cut(s) 726
XmiI GTMKAC 1 cut(s) 275
XspI CTAG 1 cut(s) 894
ZrmI AGTACT 1 cut(s) 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.