Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0014488

Physical Location & Seq

Genomic Coordinates Forward (+)

20984438 .. 20987946

Gene Structure 3509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G238200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAGGACGCTGCGATGGAAAACGGAGAGACAAACAAGGATAGTGAGGTGGCTCCTGCCCTAATTGCAGTCCACCCGACCCAGAATTCAGTTGCAGTCGCTGTCGGGTCGGACCTCCGCGTCTTCGACCTCCTTGGGGGTTGTGCGGTGTCTTTGGTAGATGATTCTGATGGTTCTCTTCATAAGGATTCCATAAGAGCCATTCGTTATGGAGCAAACGGGAAGCTCTTTGTGTCTGCTGGTGATGATAAACTTGTCAAGATATGGTCGACCGAATCGTGGCGCTGCATTAGTTCCTTGTGCTCAGAGAAAAGAGTGAGCGCAGTTGCCATTAGCAATGATGGTTCCTATGTTTGTTTTGCTGACAAATTTGGGGTTGTTTGGGTTGTGGTTGTGGATGGGTTTAATGGAGATCAAGATTTTGTGAATAAGAAGGCAGCACCACTGCTTTCTCACTATTGCAGCATCATAACAAGCCTGGAATTTTCACCAGATGGCCGATTTTTCCTTAGTGCTGATCGGGATTCCAAAATTCGAGTTACTGTGTTTCCCAAGAAGCCATTAGATGGAGCCCATGAGATACAAAGTTTTTCCCTTGGTCATACAGAGTTTGTTTCTTGCCTCGCTTTTGTTTGCACTCATGAATGCCCCCAGGGTTTCCTTGTCTCTGGAAGTGGTGATTCAACAGTTCGCCTATGGGATATTTCCTCAGGATCTCTCCTAGATACTTGTGATATCAGAGAAAAGGCAGGACTTTTAGAATCTAAAGAAATAGAAGACAGGTATGCTGCTGTTACTGATTTATGCACCATCCCAGATAGCACCCTTGTTGCGGTGGCTGTCCAAAGTTTGCAAGGAATAATATTGTTGAGCTGTGATCTTTCTGCTCAAACACTCTATGTTGCCAAGGTGGTTTCTATCAAGGGAGATGCCTTTATACCTACAAGCTTGGGGACTAGCTTTTCCTCTGGATTATTGTGGATGGTAACCGGTGCCTCAAACTTGCATGATTCTCAACACCCTTGTTTGTCCCGTGTCAAGGTTATCTCTGGCTTTAAGGAAAGCAGTCCTGATTTTGTTCAGCATGGGCCAATTGTTTTGGAAGATGATGAGATCCCTAGGAGCGAGAAATTGCTCGAGAAGTTGCAAGGAAGAGTTTCCTTTGACAAAAATTATTTCTTGACAGCAGCTGAGGCTTTGAAAACATCCATGAGCAATTTGCTAATAAAAAAGCAGTACTCTACGGAGAAACGAGAATTTAGAAAGAGAGGCAGAAATGACAAGAAAATCAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043527 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

433

Amino Acids

47.04

Weight (kDa)

5.67

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03110
fragaria_vesca	FvH4_2g23260
malus_domestica	MD03G1261900.v1.1 MD11G1282600.v1.1
prunus_persica	Prupe.8G238200_v2.0.a1
pyrus_communis	pycom03g20960 pycom11g25030
rosa_chinensis	RchiOBHm_Chr6g0290561
rosa_laevigata	RLG00000012193 RLG00000012197
rosa_multiflora	Rmu_sc0017853.1_g000005 Rmu_sc0022570.1_g000001
rosa_roxburghii	Rroxscaffold_7G00176890
rosa_rugosa	Rorug06G0213100
rosa_samantha	Rh6AG324200 Rh6DG324700
rosa_wichuraiana	Rw6G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	992
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccI	GTMKAC	1 cut(s)	269
AccII	CGCG	1 cut(s)	120
AciI	CCGC	3 cut(s)	118, 146, 833
AclWI	GGATC	2 cut(s)	721, 1108
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	5 cut(s)	85, 368, 482, 531, 1256
AfaI	GTAC	1 cut(s)	1238
AfiI	CCNNNNNNNGG	5 cut(s)	136, 279, 566, 832, 1039
AgeI	ACCGGT	1 cut(s)	989
AgsI	TTSAA	2 cut(s)	684, 1201
AjnI	CCWGG	2 cut(s)	477, 651
AluBI	AGCT	5 cut(s)	226, 873, 948, 960, 1190
AluI	AGCT	5 cut(s)	226, 873, 948, 960, 1190
Alw21I	GWGCWC	1 cut(s)	305
Alw26I	GTCTC	2 cut(s)	23, 670
AlwI	GGATC	2 cut(s)	721, 1108
AlwNI	CAGNNNCTG	2 cut(s)	101, 1190
Ama87I	CYCGRG	1 cut(s)	1136
AoxI	GGCC	2 cut(s)	496, 1088
ApeKI	GCWGC	6 cut(s)	11, 285, 437, 462, 788, 1187
ApoI	RAATTY	5 cut(s)	85, 368, 482, 531, 1256
AsiGI	ACCGGT	1 cut(s)	989
Asp700I	GAANNNNTTC	1 cut(s)	1156
AspA2I	CCTAGG	1 cut(s)	1118
AspLEI	GCGC	2 cut(s)	285, 323
AspS9I	GGNCC	2 cut(s)	112, 1088
AsuHPI	GGTGA	3 cut(s)	254, 480, 689
AvaI	CYCGRG	1 cut(s)	1136
AvaII	GGWCC	1 cut(s)	112
AvrII	CCTAGG	1 cut(s)	1118
AxyI	CCTNAGG	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	992
BanII	GRGCYC	1 cut(s)	574
BbsI	GAAGAC	2 cut(s)	115, 783
Bbv12I	GWGCWC	1 cut(s)	305
BbvCI	CCTCAGC	1 cut(s)	1191
BbvI	GCAGC	5 cut(s)	272, 449, 474, 775, 1199
BccI	CCATC	8 cut(s)	10, 164, 335, 392, 488, 560, 818, 976
BciT130I	CCWGG	2 cut(s)	479, 653
BcoDI	GTCTC	2 cut(s)	23, 670
BfaI	CTAG	3 cut(s)	722, 957, 1119
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	6 cut(s)	12, 286, 438, 463, 789, 1188
BlnI	CCTAGG	1 cut(s)	1118
BlsI	GCNGC	6 cut(s)	13, 287, 439, 464, 790, 1189
BmcAI	AGTACT	1 cut(s)	1238
Bme1390I	CCNGG	2 cut(s)	479, 653
Bme18I	GGWCC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	1136
BmgT120I	GGNCC	2 cut(s)	112, 1088
BmiI	GGNNCC	4 cut(s)	54, 346, 571, 994
BmrFI	CCNGG	2 cut(s)	479, 653
BmsI	GCATC	2 cut(s)	474, 919
BpiI	GAAGAC	2 cut(s)	115, 783
Bpu10I	CCTNAGC	1 cut(s)	1191
BsaJI	CCNNGG	6 cut(s)	133, 595, 651, 652, 906, 1118
BsaWI	WCCGGW	1 cut(s)	989
Bsc4I	CCNNNNNNNGG	5 cut(s)	136, 279, 566, 832, 1039
Bse118I	RCCGGY	1 cut(s)	989
Bse21I	CCTNAGG	1 cut(s)	709
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	479, 653
BseDI	CCNNGG	6 cut(s)	133, 595, 651, 652, 906, 1118
BseGI	GGATG	4 cut(s)	403, 810, 987, 1205
BseLI	CCNNNNNNNGG	5 cut(s)	136, 279, 566, 832, 1039
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	3 cut(s)	318, 723, 1182
BseXI	GCAGC	5 cut(s)	272, 449, 474, 775, 1199
Bsh1236I	CGCG	1 cut(s)	120
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	498, 1090
BshNI	GGYRCC	1 cut(s)	992
BshTI	ACCGGT	1 cut(s)	989
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	1136
BsiSI	CCGG	1 cut(s)	990
BslFI	GGGAC	2 cut(s)	967, 1015
BslI	CCNNNNNNNGG	5 cut(s)	136, 279, 566, 832, 1039
BsmAI	GTCTC	2 cut(s)	23, 670
BsmFI	GGGAC	2 cut(s)	967, 1015
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	2 cut(s)	498, 1090
BsoBI	CYCGRG	1 cut(s)	1136
Bsp1286I	GDGCHC	2 cut(s)	305, 574
Bsp143I	GATC	5 cut(s)	412, 517, 713, 877, 1113
BspACI	CCGC	3 cut(s)	118, 146, 833
BspANI	GGCC	2 cut(s)	498, 1090
BspCNI	CTCAG	3 cut(s)	317, 722, 1183
BspFNI	CGCG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	4 cut(s)	54, 346, 571, 994
BspPI	GGATC	2 cut(s)	721, 1108
BspT107I	GGYRCC	1 cut(s)	992
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	989
BssAI	RCCGGY	1 cut(s)	989
BssECI	CCNNGG	6 cut(s)	133, 595, 651, 652, 906, 1118
BssMI	GATC	5 cut(s)	412, 517, 713, 877, 1113
BssT1I	CCWWGG	4 cut(s)	133, 595, 906, 1118
Bst2UI	CCWGG	2 cut(s)	479, 653
Bst4CI	ACNGT	2 cut(s)	544, 688
Bst6I	CTCTTC	2 cut(s)	183, 1147
BstDEI	CTNAG	4 cut(s)	304, 509, 709, 1191
BstEII	GGTNACC	1 cut(s)	985
BstF5I	GGATG	4 cut(s)	403, 810, 987, 1205
BstFNI	CGCG	1 cut(s)	120
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	2 cut(s)	285, 323
BstKTI	GATC	5 cut(s)	415, 520, 716, 880, 1116
BstMAI	GTCTC	2 cut(s)	23, 670
BstMBI	GATC	5 cut(s)	412, 517, 713, 877, 1113
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 1193
BstNI	CCWGG	2 cut(s)	479, 653
BstPI	GGTNACC	1 cut(s)	985
BstSCI	CCNGG	2 cut(s)	477, 651
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	5 cut(s)	272, 449, 474, 775, 1199
BstV2I	GAAGAC	2 cut(s)	115, 783
BstX2I	RGATCY	2 cut(s)	713, 1113
BstYI	RGATCY	2 cut(s)	713, 1113
Bsu36I	CCTNAGG	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	498, 1090
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	4 cut(s)	403, 810, 987, 1205
BtsI	GCAGTG	1 cut(s)	443
BtsIMutI	CAGTG	1 cut(s)	443
CaiI	CAGNNNCTG	2 cut(s)	101, 1190
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	2 cut(s)	285, 323
Cfr10I	RCCGGY	1 cut(s)	989
Cfr13I	GGNCC	2 cut(s)	112, 1088
CseI	GACGC	2 cut(s)	17, 109
Csp6I	GTAC	1 cut(s)	1237
CspAI	ACCGGT	1 cut(s)	989
CviAII	CATG	5 cut(s)	575, 641, 1007, 1085, 1210
CviQI	GTAC	1 cut(s)	1237
DdeI	CTNAG	4 cut(s)	304, 509, 709, 1191
DpnI	GATC	5 cut(s)	414, 519, 715, 879, 1115
DpnII	GATC	5 cut(s)	412, 517, 713, 877, 1113
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	183, 1147
EarI	CTCTTC	2 cut(s)	183, 1147
Eco130I	CCWWGG	4 cut(s)	133, 595, 906, 1118
Eco24I	GRGCYC	1 cut(s)	574
Eco32I	GATATC	1 cut(s)	736
Eco47I	GGWCC	1 cut(s)	112
Eco81I	CCTNAGG	1 cut(s)	709
Eco88I	CYCGRG	1 cut(s)	1136
Eco91I	GGTNACC	1 cut(s)	985
EcoO65I	GGTNACC	1 cut(s)	985
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	477, 651
EcoRV	GATATC	1 cut(s)	736
EcoT14I	CCWWGG	4 cut(s)	133, 595, 906, 1118
EcoT38I	GRGCYC	1 cut(s)	574
ErhI	CCWWGG	4 cut(s)	133, 595, 906, 1118
FaeI	CATG	5 cut(s)	578, 644, 1010, 1088, 1213
FaqI	GGGAC	2 cut(s)	967, 1015
FatI	CATG	5 cut(s)	574, 640, 1006, 1084, 1209
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	6 cut(s)	12, 286, 438, 463, 789, 1188
FokI	GGATG	4 cut(s)	410, 797, 994, 1192
FriOI	GRGCYC	1 cut(s)	574
Fsp4HI	GCNGC	6 cut(s)	12, 286, 438, 463, 789, 1188
FspBI	CTAG	3 cut(s)	722, 957, 1119
GlaI	GCGC	2 cut(s)	284, 322
GluI	GCNGC	6 cut(s)	12, 286, 438, 463, 789, 1188
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	498, 1090
HapII	CCGG	1 cut(s)	990
HgaI	GACGC	2 cut(s)	17, 109
HhaI	GCGC	2 cut(s)	285, 323
Hin1II	CATG	5 cut(s)	578, 644, 1010, 1088, 1213
Hin6I	GCGC	2 cut(s)	283, 321
HinP1I	GCGC	2 cut(s)	283, 321
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	946
HinfI	GANTC	7 cut(s)	164, 188, 275, 524, 680, 761, 1010
HpaII	CCGG	1 cut(s)	990
HphI	GGTGA	3 cut(s)	254, 480, 689
Hpy166II	GTNNAC	2 cut(s)	73, 270
Hpy188I	TCNGA	4 cut(s)	112, 169, 307, 740
Hpy8I	GTNNAC	2 cut(s)	73, 270
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	544, 688
HpyCH4V	TGCA	9 cut(s)	68, 95, 288, 462, 636, 807, 853, 1006, 1147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 1193
HpyF3I	CTNAG	4 cut(s)	304, 509, 709, 1191
Hsp92II	CATG	5 cut(s)	578, 644, 1010, 1088, 1213
HspAI	GCGC	2 cut(s)	283, 321
Kzo9I	GATC	5 cut(s)	412, 517, 713, 877, 1113
LmnI	GCTCC	4 cut(s)	58, 212, 569, 1122
Lsp1109I	GCAGC	5 cut(s)	272, 449, 474, 775, 1199
LweI	GCATC	2 cut(s)	474, 919
MaeI	CTAG	3 cut(s)	722, 957, 1119
MaeIII	GTNAC	3 cut(s)	538, 793, 985
MalI	GATC	5 cut(s)	414, 519, 715, 879, 1115
MboI	GATC	5 cut(s)	412, 517, 713, 877, 1113
MboII	GAAGA	5 cut(s)	115, 170, 788, 1115, 1164
MfeI	CAATTG	1 cut(s)	1092
MflI	RGATCY	2 cut(s)	713, 1113
MhlI	GDGCHC	2 cut(s)	305, 574
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	9 cut(s)	40, 125, 140, 632, 718, 976, 1006, 1186, 1262
MroXI	GAANNNNTTC	1 cut(s)	1156
MseI	TTAA	2 cut(s)	405, 1056
MspA1I	CMGCKG	1 cut(s)	1190
MspI	CCGG	1 cut(s)	990
MspR9I	CCNGG	2 cut(s)	479, 653
MunI	CAATTG	1 cut(s)	1092
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	2 cut(s)	479, 653
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	2 cut(s)	65, 1193
NdeII	GATC	5 cut(s)	412, 517, 713, 877, 1113
NlaIII	CATG	5 cut(s)	578, 644, 1010, 1088, 1213
NlaIV	GGNNCC	4 cut(s)	54, 346, 571, 994
PaeR7I	CTCGAG	1 cut(s)	1136
PagI	TCATGA	1 cut(s)	640
PasI	CCCWGGG	1 cut(s)	652
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PctI	GAATGC	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	1156
PfeI	GAWTC	7 cut(s)	164, 188, 275, 524, 680, 761, 1010
PflMI	CCANNNNNTGG	1 cut(s)	566
PinAI	ACCGGT	1 cut(s)	989
PkrI	GCNGC	6 cut(s)	13, 287, 439, 464, 790, 1189
Psp6I	CCWGG	2 cut(s)	477, 651
PspEI	GGTNACC	1 cut(s)	985
PspGI	CCWGG	2 cut(s)	477, 651
PspN4I	GGNNCC	4 cut(s)	54, 346, 571, 994
PspPI	GGNCC	2 cut(s)	112, 1088
PstNI	CAGNNNCTG	2 cut(s)	101, 1190
PsuI	RGATCY	2 cut(s)	713, 1113
PvuII	CAGCTG	1 cut(s)	1190
RsaI	GTAC	1 cut(s)	1238
RsaNI	GTAC	1 cut(s)	1237
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	405, 1056
SatI	GCNGC	6 cut(s)	12, 286, 438, 463, 789, 1188
Sau3AI	GATC	5 cut(s)	412, 517, 713, 877, 1113
Sau96I	GGNCC	2 cut(s)	112, 1088
ScaI	AGTACT	1 cut(s)	1238
ScrFI	CCNGG	2 cut(s)	479, 653
SduI	GDGCHC	2 cut(s)	305, 574
SfaNI	GCATC	2 cut(s)	474, 919
Sfr274I	CTCGAG	1 cut(s)	1136
SinI	GGWCC	1 cut(s)	112
SlaI	CTCGAG	1 cut(s)	1136
SmlI	CTYRAG	1 cut(s)	1136
SmoI	CTYRAG	1 cut(s)	1136
SsiI	CCGC	3 cut(s)	118, 146, 833
SspI	AATATT	1 cut(s)	864
SspMI	CTAG	3 cut(s)	722, 957, 1119
StyD4I	CCNGG	2 cut(s)	477, 651
StyI	CCWWGG	4 cut(s)	133, 595, 906, 1118
TaaI	ACNGT	2 cut(s)	544, 688
TaqI	TCGA	4 cut(s)	126, 269, 535, 1137
TaqII	GACCGA	1 cut(s)	287
TatI	WGTACW	1 cut(s)	1236
TfiI	GAWTC	7 cut(s)	164, 188, 275, 524, 680, 761, 1010
Tru1I	TTAA	2 cut(s)	405, 1056
Tru9I	TTAA	2 cut(s)	405, 1056
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	6 cut(s)	11, 285, 437, 462, 788, 1187
TspDTI	ATGAA	2 cut(s)	170, 657
TspGWI	ACGGA	2 cut(s)	39, 1259
TspRI	CASTG	1 cut(s)	450
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	112
XapI	RAATTY	5 cut(s)	85, 368, 482, 531, 1256
XhoI	CTCGAG	1 cut(s)	1136
XmaJI	CCTAGG	1 cut(s)	1118
XmiI	GTMKAC	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	1156
XspI	CTAG	3 cut(s)	722, 957, 1119
ZrmI	AGTACT	1 cut(s)	1238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.