pycom03g20960

Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
21314156 .. 21317073
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g20960.6

Sequence Viewer

Length: 1299 bp
ATGGAGGACACTCCGATGGAAAACGGAGAGACCAACAAGGATTCTGAGGTGGCCCCAGCCTTAATTGCAGTCCACCCTACCCAGAGCTCCGTCGCAGTCGCCGTCGGGTCGGACCTCCGCGTCTTCGACCTCCGTGGGGGTTGTGCGGTTTCTTTGGTGGATAATTCTGGTAGTCCTCTTCATAAGGATTCGATAAGAGCCATTCGCTACGGAGCAGACGGGAAGCTTTTTGTGTCGGCTGGTGATGATAAAACCGTCAAGATTTGGTCGACTGAATCTTGGCGCTGCATTACTACTGTGTGCTCAGAGAAAAGAGTGAGTGCAGTTGCCATAAGCAATGATGGTTCCTATGTTTGTTTTGCTGACAAGTTTGGGGTTGTTTGGGTTGTGGATGTGGATGTGTCTGATGGACATCAAGCTTCTGTTAGTAAGAATGCGGCACCGCTGCTTTCTCACTATTGTAGCATCATAACAAGCCTGGAATTTTCACCAGATGGACGATTTTTCGTTAGTGCTGACCGGGATTTCAAAATTCGAGTTACAGTGTTTCCCAAGAAGCCTTTAGATGGAGCTCACGAGATACAAAGTTTCTCCCTTGGTCATACAGAGTTTGTTTCATGCCTTGCCTTTGTTTGCACTCAGGAATGCCCCCAGGGGTTTCTTGTCTCTGGAAGTGGTGATTCAACAGTTCGTCTATGGGATATTTCCTCAGGATCTCTCCTAAACACATTTGATATCAGAGAAAAGGCAGGACTTTTAGGGTCCAATGGAATAGAAAAGTGCCATGGGGCCGTTACAGATTTGTGCACCATCCCAGATAGCACCCTTGTTGCAGTGGCTGTTCAAAGTTTGCAAGGAATAACATTATTGAGCTGTGATCTTTCTGCTAAAACACTCCATATCGCCAAGGTGGTTTCTATCAAGGGAGATGCCTTTATTCCTACAAGCTTGGGAACTAGCGTATCGTCAGGATTATTGTGGATGGTAACGGGTGCCTCTAAGTTGCATGATTCTCAATACCCTTGTGTGGCCCGTGTCAAGGTTATCTCTGGCGTTAAGGAAACCGGTCCTGATTCAGTTGAGCATGGGCCAATTGTTTTGAAAGACGCTGAGATCCCCGGAGGTGAGAAATTGCTCGAGAAGCTGCAGGGAAGAGTGTCGTTTGACGATAACTTTTTCTTGACAGCTGCTGAGGCTTTGAAAACATCCATGAGCAATTTGTTAATAAAAAAGCAGTACTCTACGGAGAATCGAGAGTTTAGAAAGAGAACCAGAAATGATAAGAAACTCAAGCAGTGA

Protein Analysis

433

Amino Acids

46.46

Weight (kDa)

6.09

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014488)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccB1I GGYRCC 2 cut(s) 439, 992
AccI GTMKAC 1 cut(s) 269
AccII CGCG 1 cut(s) 120
AciI CCGC 4 cut(s) 118, 146, 437, 443
AclWI GGATC 2 cut(s) 721, 1108
AcsI RAATTY 2 cut(s) 482, 531
AfaI GTAC 1 cut(s) 1238
AfiI CCNNNNNNNGG 4 cut(s) 136, 566, 1027, 1039
AgeI ACCGGT 1 cut(s) 1064
AgsI TTSAA 5 cut(s) 529, 684, 845, 1102, 1201
AjnI CCWGG 2 cut(s) 477, 651
AluBI AGCT 8 cut(s) 87, 226, 419, 572, 873, 948, 1144, 1187
AluI AGCT 8 cut(s) 87, 226, 419, 572, 873, 948, 1144, 1187
Alw21I GWGCWC 4 cut(s) 89, 305, 574, 809
Alw26I GTCTC 2 cut(s) 23, 670
Alw44I GTGCAC 1 cut(s) 805
AlwI GGATC 2 cut(s) 721, 1108
AlwNI CAGNNNCTG 2 cut(s) 839, 1190
Ama87I CYCGRG 1 cut(s) 1136
AoxI GGCC 4 cut(s) 51, 789, 1029, 1088
ApaLI GTGCAC 1 cut(s) 805
ApeKI GCWGC 4 cut(s) 285, 445, 1144, 1187
ApoI RAATTY 2 cut(s) 482, 531
AsiGI ACCGGT 1 cut(s) 1064
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 7 cut(s) 52, 112, 762, 789, 1030, 1067, 1088
AsuC2I CCSGG 2 cut(s) 521, 1119
AsuHPI GGTGA 4 cut(s) 254, 480, 689, 1136
AvaI CYCGRG 1 cut(s) 1136
AvaII GGWCC 3 cut(s) 112, 762, 1067
AxyI CCTNAGG 1 cut(s) 709
BaeGI GKGCMC 1 cut(s) 809
BaeI ACNNNNGTAYC 2 cut(s) 945, 978
BanI GGYRCC 2 cut(s) 439, 992
BanII GRGCYC 2 cut(s) 89, 574
BauI CACGAG 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 4 cut(s) 89, 305, 574, 809
BbvCI CCTCAGC 1 cut(s) 1191
BbvI GCAGC 4 cut(s) 272, 432, 1131, 1174
BccI CCATC 7 cut(s) 10, 335, 401, 488, 560, 818, 976
BceAI ACGGC 2 cut(s) 86, 776
BciT130I CCWGG 2 cut(s) 479, 653
BcnI CCSGG 2 cut(s) 521, 1119
BcoDI GTCTC 2 cut(s) 23, 670
BfaI CTAG 1 cut(s) 957
BfmI CTRYAG 1 cut(s) 1145
BfoI RGCGCY 1 cut(s) 286
BisI GCNGC 5 cut(s) 286, 438, 446, 1145, 1188
BlsI GCNGC 5 cut(s) 287, 439, 447, 1146, 1189
BmcAI AGTACT 1 cut(s) 1238
Bme1390I CCNGG 4 cut(s) 479, 521, 653, 1119
Bme18I GGWCC 3 cut(s) 112, 762, 1067
BmeT110I CYCGRG 1 cut(s) 1136
BmgT120I GGNCC 7 cut(s) 52, 112, 762, 789, 1030, 1067, 1088
BmiI GGNNCC 6 cut(s) 54, 346, 441, 763, 790, 994
BmrFI CCNGG 4 cut(s) 479, 521, 653, 1119
BmsI GCATC 2 cut(s) 474, 919
BpiI GAAGAC 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 1191
BpuEI CTTGAG 1 cut(s) 1274
BpuMI CCSGG 2 cut(s) 521, 1119
BsaBI GATNNNNATC 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 7 cut(s) 133, 595, 651, 652, 784, 906, 1117
BsaWI WCCGGW 1 cut(s) 1064
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 566, 1027, 1039
Bse118I RCCGGY 1 cut(s) 1064
Bse21I CCTNAGG 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 411
BseBI CCWGG 2 cut(s) 479, 653
BseDI CCNNGG 7 cut(s) 133, 595, 651, 652, 784, 906, 1117
BseGI GGATG 5 cut(s) 397, 403, 810, 987, 1205
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 4 cut(s) 136, 566, 1027, 1039
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 6 cut(s) 36, 318, 653, 723, 1101, 1182
BseSI GKGCMC 1 cut(s) 809
BseXI GCAGC 4 cut(s) 272, 432, 1131, 1174
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 4 cut(s) 53, 791, 1031, 1090
BshNI GGYRCC 2 cut(s) 439, 992
BshTI ACCGGT 1 cut(s) 1064
BsiHKAI GWGCWC 4 cut(s) 89, 305, 574, 809
BsiHKCI CYCGRG 1 cut(s) 1136
BsiSI CCGG 3 cut(s) 520, 1065, 1119
BslI CCNNNNNNNGG 4 cut(s) 136, 566, 1027, 1039
BsmAI GTCTC 2 cut(s) 23, 670
BsmI GAATGC 2 cut(s) 439, 650
BsnI GGCC 4 cut(s) 53, 791, 1031, 1090
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 1136
Bsp1286I GDGCHC 4 cut(s) 89, 305, 574, 809
Bsp143I GATC 3 cut(s) 713, 877, 1113
Bsp19I CCATGG 1 cut(s) 784
BspACI CCGC 4 cut(s) 118, 146, 437, 443
BspANI GGCC 4 cut(s) 53, 791, 1031, 1090
BspCNI CTCAG 6 cut(s) 37, 317, 652, 722, 1102, 1183
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 6 cut(s) 54, 346, 441, 763, 790, 994
BspMAI CTGCAG 1 cut(s) 1149
BspPI GGATC 2 cut(s) 721, 1108
BspT107I GGYRCC 2 cut(s) 439, 992
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 1064
BssAI RCCGGY 1 cut(s) 1064
BssECI CCNNGG 7 cut(s) 133, 595, 651, 652, 784, 906, 1117
BssMI GATC 3 cut(s) 713, 877, 1113
BssSI CACGAG 1 cut(s) 575
BssT1I CCWWGG 3 cut(s) 595, 784, 906
Bst2BI CACGAG 1 cut(s) 575
Bst2UI CCWGG 2 cut(s) 479, 653
Bst4CI ACNGT 4 cut(s) 256, 298, 544, 688
Bst6I CTCTTC 2 cut(s) 183, 1147
BstDEI CTNAG 7 cut(s) 45, 304, 639, 709, 999, 1110, 1191
BstDSI CCRYGG 2 cut(s) 133, 784
BstF5I GGATG 5 cut(s) 397, 403, 810, 987, 1205
BstFNI CGCG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 3 cut(s) 716, 880, 1116
BstMAI GTCTC 2 cut(s) 23, 670
BstMBI GATC 3 cut(s) 713, 877, 1113
BstMWI GCNNNNNNNGC 3 cut(s) 65, 1141, 1193
BstNI CCWGG 2 cut(s) 479, 653
BstSCI CCNGG 4 cut(s) 477, 519, 651, 1117
BstSFI CTRYAG 1 cut(s) 1145
BstSLI GKGCMC 1 cut(s) 809
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 4 cut(s) 272, 432, 1131, 1174
BstV2I GAAGAC 1 cut(s) 115
BstX2I RGATCY 2 cut(s) 713, 1113
BstYI RGATCY 2 cut(s) 713, 1113
Bsu36I CCTNAGG 1 cut(s) 709
BsuRI GGCC 4 cut(s) 53, 791, 1031, 1090
BtgI CCRYGG 2 cut(s) 133, 784
BtsCI GGATG 5 cut(s) 397, 403, 810, 987, 1205
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 2 cut(s) 549, 840
CaiI CAGNNNCTG 2 cut(s) 839, 1190
CfoI GCGC 1 cut(s) 285
Cfr10I RCCGGY 1 cut(s) 1064
Cfr13I GGNCC 7 cut(s) 52, 112, 762, 789, 1030, 1067, 1088
CseI GACGC 2 cut(s) 109, 1115
Csp6I GTAC 1 cut(s) 1237
CspAI ACCGGT 1 cut(s) 1064
CviAII CATG 5 cut(s) 618, 785, 1007, 1085, 1210
CviQI GTAC 1 cut(s) 1237
DdeI CTNAG 7 cut(s) 45, 304, 639, 709, 999, 1110, 1191
DpnI GATC 3 cut(s) 715, 879, 1115
DpnII GATC 3 cut(s) 713, 877, 1113
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
Eam1104I CTCTTC 2 cut(s) 183, 1147
EarI CTCTTC 2 cut(s) 183, 1147
Ecl136II GAGCTC 2 cut(s) 87, 572
Eco130I CCWWGG 3 cut(s) 595, 784, 906
Eco24I GRGCYC 2 cut(s) 89, 574
Eco31I GGTCTC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 736
Eco47I GGWCC 3 cut(s) 112, 762, 1067
Eco53kI GAGCTC 2 cut(s) 87, 572
Eco81I CCTNAGG 1 cut(s) 709
Eco88I CYCGRG 1 cut(s) 1136
EcoICRI GAGCTC 2 cut(s) 87, 572
EcoRII CCWGG 2 cut(s) 477, 651
EcoRV GATATC 1 cut(s) 736
EcoT14I CCWWGG 3 cut(s) 595, 784, 906
EcoT38I GRGCYC 2 cut(s) 89, 574
ErhI CCWWGG 3 cut(s) 595, 784, 906
FaeI CATG 5 cut(s) 621, 788, 1010, 1088, 1213
FatI CATG 5 cut(s) 617, 784, 1006, 1084, 1209
FblI GTMKAC 1 cut(s) 269
Fnu4HI GCNGC 5 cut(s) 286, 438, 446, 1145, 1188
FokI GGATG 5 cut(s) 404, 410, 797, 994, 1192
FriOI GRGCYC 2 cut(s) 89, 574
Fsp4HI GCNGC 5 cut(s) 286, 438, 446, 1145, 1188
FspBI CTAG 1 cut(s) 957
GlaI GCGC 1 cut(s) 284
GluI GCNGC 5 cut(s) 286, 438, 446, 1145, 1188
GsaI CCCAGC 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 4 cut(s) 53, 791, 1031, 1090
HapII CCGG 3 cut(s) 520, 1065, 1119
HgaI GACGC 2 cut(s) 109, 1115
HhaI GCGC 1 cut(s) 285
Hin1II CATG 5 cut(s) 621, 788, 1010, 1088, 1213
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HincII GTYRAC 1 cut(s) 270
HindII GTYRAC 1 cut(s) 270
HindIII AAGCTT 3 cut(s) 224, 417, 946
HinfI GANTC 7 cut(s) 41, 188, 275, 680, 1010, 1073, 1249
HpaII CCGG 3 cut(s) 520, 1065, 1119
HphI GGTGA 4 cut(s) 254, 480, 689, 1136
Hpy166II GTNNAC 3 cut(s) 73, 270, 807
Hpy188I TCNGA 6 cut(s) 15, 46, 112, 307, 406, 740
Hpy8I GTNNAC 3 cut(s) 73, 270, 807
Hpy99I CGWCG 2 cut(s) 95, 107
HpyCH4III ACNGT 4 cut(s) 256, 298, 544, 688
HpyCH4V TGCA 9 cut(s) 68, 288, 323, 636, 807, 833, 853, 1006, 1147
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 1141, 1193
HpyF3I CTNAG 7 cut(s) 45, 304, 639, 709, 999, 1110, 1191
Hsp92II CATG 5 cut(s) 621, 788, 1010, 1088, 1213
HspAI GCGC 1 cut(s) 283
Kzo9I GATC 3 cut(s) 713, 877, 1113
LmnI GCTCC 3 cut(s) 92, 212, 569
Lsp1109I GCAGC 4 cut(s) 272, 432, 1131, 1174
LweI GCATC 2 cut(s) 474, 919
MaeI CTAG 1 cut(s) 957
MaeIII GTNAC 3 cut(s) 538, 793, 985
MalI GATC 3 cut(s) 715, 879, 1115
MboI GATC 3 cut(s) 713, 877, 1113
MboII GAAGA 3 cut(s) 115, 170, 1164
MfeI CAATTG 1 cut(s) 1092
MflI RGATCY 2 cut(s) 713, 1113
MhlI GDGCHC 4 cut(s) 89, 305, 574, 809
MluCI AATT 7 cut(s) 63, 163, 482, 531, 1092, 1130, 1216
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 8 cut(s) 40, 125, 140, 186, 718, 1006, 1115, 1186
MseI TTAA 3 cut(s) 62, 1056, 1223
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 2 cut(s) 445, 1187
MspI CCGG 3 cut(s) 520, 1065, 1119
MspR9I CCNGG 4 cut(s) 479, 521, 653, 1119
MunI CAATTG 1 cut(s) 1092
Mva1269I GAATGC 2 cut(s) 439, 650
MvaI CCWGG 2 cut(s) 479, 653
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 65, 1141, 1193
NciI CCSGG 2 cut(s) 521, 1119
NcoI CCATGG 1 cut(s) 784
NdeII GATC 3 cut(s) 713, 877, 1113
NlaIII CATG 5 cut(s) 621, 788, 1010, 1088, 1213
NlaIV GGNNCC 6 cut(s) 54, 346, 441, 763, 790, 994
PaeR7I CTCGAG 1 cut(s) 1136
PasI CCCWGGG 1 cut(s) 652
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 2 cut(s) 439, 650
PfeI GAWTC 7 cut(s) 41, 188, 275, 680, 1010, 1073, 1249
PinAI ACCGGT 1 cut(s) 1064
PkrI GCNGC 5 cut(s) 287, 439, 447, 1146, 1189
Psp124BI GAGCTC 2 cut(s) 89, 574
Psp6I CCWGG 2 cut(s) 477, 651
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 2 cut(s) 477, 651
PspN4I GGNNCC 6 cut(s) 54, 346, 441, 763, 790, 994
PspPI GGNCC 7 cut(s) 52, 112, 762, 789, 1030, 1067, 1088
PstI CTGCAG 1 cut(s) 1149
PstNI CAGNNNCTG 2 cut(s) 839, 1190
PsuI RGATCY 2 cut(s) 713, 1113
PvuII CAGCTG 1 cut(s) 1187
RsaI GTAC 1 cut(s) 1238
RsaNI GTAC 1 cut(s) 1237
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 2 cut(s) 89, 574
SalI GTCGAC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 62, 1056, 1223
SatI GCNGC 5 cut(s) 286, 438, 446, 1145, 1188
Sau3AI GATC 3 cut(s) 713, 877, 1113
Sau96I GGNCC 7 cut(s) 52, 112, 762, 789, 1030, 1067, 1088
ScaI AGTACT 1 cut(s) 1238
ScrFI CCNGG 4 cut(s) 479, 521, 653, 1119
SduI GDGCHC 4 cut(s) 89, 305, 574, 809
SfaNI GCATC 2 cut(s) 474, 919
SfcI CTRYAG 1 cut(s) 1145
Sfr274I CTCGAG 1 cut(s) 1136
SinI GGWCC 3 cut(s) 112, 762, 1067
SlaI CTCGAG 1 cut(s) 1136
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 1136, 1289
SmoI CTYRAG 2 cut(s) 1136, 1289
Sse9I AATT 7 cut(s) 63, 163, 482, 531, 1092, 1130, 1216
SsiI CCGC 4 cut(s) 118, 146, 437, 443
SspMI CTAG 1 cut(s) 957
SstI GAGCTC 2 cut(s) 89, 574
StyD4I CCNGG 4 cut(s) 477, 519, 651, 1117
StyI CCWWGG 3 cut(s) 595, 784, 906
TaaI ACNGT 4 cut(s) 256, 298, 544, 688
TaqI TCGA 6 cut(s) 126, 191, 269, 535, 1137, 1252
TasI AATT 7 cut(s) 63, 163, 482, 531, 1092, 1130, 1216
TatI WGTACW 1 cut(s) 1236
TauI GCSGC 1 cut(s) 440
TfiI GAWTC 7 cut(s) 41, 188, 275, 680, 1010, 1073, 1249
Tru1I TTAA 3 cut(s) 62, 1056, 1223
Tru9I TTAA 3 cut(s) 62, 1056, 1223
TscAI CASTG 2 cut(s) 549, 840
TseI GCWGC 4 cut(s) 285, 445, 1144, 1187
TspDTI ATGAA 2 cut(s) 170, 606
TspGWI ACGGA 5 cut(s) 39, 79, 122, 225, 1259
TspRI CASTG 2 cut(s) 549, 840
VneI GTGCAC 1 cut(s) 805
VpaK11BI GGWCC 3 cut(s) 112, 762, 1067
XapI RAATTY 2 cut(s) 482, 531
XhoI CTCGAG 1 cut(s) 1136
XmiI GTMKAC 1 cut(s) 269
XspI CTAG 1 cut(s) 957
ZrmI AGTACT 1 cut(s) 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.