AT1G03180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010766
Physical Location & Seq
Forward (+)
773358 .. 775362
2005 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03180.4

Sequence Viewer

Length: 798 bp
ATGGAAATGGCGGAAGGGGAAGGAACTACAGAGGAGAACTACGACGTAGACATCGCGACCACCGCTTCTTCATTAGGCGGCTCCGGCGTCTTCCATATCATCAATGACATAGTCGGATTCGTCCTCTATATGCACCAGCAGATCCCTTCGGTATTACAAGACATGAGCCTTGAATTTGAAGGATTGCAAACTGAATTTATGGATTTGGAGACGAATCTTGCAGAACCTCAAGTGAAACCACTGGTTAGAAGAAAACTGATGAGTAGAAAGAGAGAGGTGAAGAATGAGATTAAGAAACTGGAGAAACTGATGAAAACCATCTCTAGTCTCCGAAGTGCGCTGCAGTTAATGATCCGTGAAGCTCCTGGCATTCAGAAAGTTGTGTTGATTCTTGGTGGTAGTCCATTACGGCCTCAAAATGCTTATGAGTTGTTATTCACACAACGCAGAGACCATGTTCTAGGCTACGAAGGTGACTTTGCTAAATCCAAAGCTGCAGAAGCACTTTCAAAAAAGACTATCCGAGCACTGATCTCGACGGGTGCTGGATCAACTTCCTACCCAGGTCCAATGAGGCTCTTCATATTGGTTCATGCTCCACCTACTTTGAATCTTCCACAACATTTCCTTCCTAAACGTGACTTCAGATACAACAGAAAGTTTGTGCCTTCAAAGTTGAGATTCAAGTGCAGAACGCAAGACAATGCAACAAATTCTCCTCCCACAAATGATCTAATATGGTATCAATGTCGACATGTGATAAAGGGATTAGCTTTCCATCAACCAGTTGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p31comet

Protein Analysis

265

Amino Acids

30.01

Weight (kDa)

9.24

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 48, 751
AccII CGCG 1 cut(s) 56
AciI CCGC 3 cut(s) 11, 63, 78
AclWI GGATC 3 cut(s) 136, 346, 556
AcsI RAATTY 3 cut(s) 173, 194, 712
AcuI CTGAAG 1 cut(s) 628
AcyI GRCGYC 1 cut(s) 87
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 7 cut(s) 173, 179, 510, 610, 672, 685, 791
AjnI CCWGG 2 cut(s) 364, 562
AluBI AGCT 3 cut(s) 362, 494, 773
AluI AGCT 3 cut(s) 362, 494, 773
Alw21I GWGCWC 1 cut(s) 529
Alw26I GTCTC 3 cut(s) 203, 332, 444
AlwI GGATC 3 cut(s) 136, 346, 556
AoxI GGCC 1 cut(s) 410
ApeKI GCWGC 2 cut(s) 340, 494
ApoI RAATTY 3 cut(s) 173, 194, 712
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 289, 485
AvaII GGWCC 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 327, 481
BccI CCATC 2 cut(s) 326, 786
BceAI ACGGC 1 cut(s) 425
BcgI CGANNNNNNTGC 2 cut(s) 516, 550
BciT130I CCWGG 2 cut(s) 366, 564
BcoDI GTCTC 3 cut(s) 203, 332, 444
BfaI CTAG 2 cut(s) 324, 461
BfmI CTRYAG 3 cut(s) 27, 341, 495
BisI GCNGC 3 cut(s) 79, 341, 495
BlsI GCNGC 3 cut(s) 80, 342, 496
Bme1390I CCNGG 2 cut(s) 366, 564
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 2 cut(s) 366, 564
BpiI GAAGAC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bse1I ACTGG 3 cut(s) 246, 303, 785
BseBI CCWGG 2 cut(s) 366, 564
BseDI CCNNGG 1 cut(s) 562
BseNI ACTGG 3 cut(s) 246, 303, 785
BseRI GAGGAG 2 cut(s) 47, 708
BseXI GCAGC 2 cut(s) 327, 481
BsgI GTGCAG 1 cut(s) 709
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 529
BsiSI CCGG 1 cut(s) 84
BsmAI GTCTC 3 cut(s) 203, 332, 444
BsmBI CGTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 529
Bsp143I GATC 5 cut(s) 141, 351, 531, 548, 730
Bsp68I TCGCGA 1 cut(s) 56
BspACI CCGC 3 cut(s) 11, 63, 78
BspANI GGCC 1 cut(s) 412
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 82
BspMAI CTGCAG 2 cut(s) 345, 499
BspPI GGATC 3 cut(s) 136, 346, 556
BspQI GCTCTTC 1 cut(s) 584
BspTNI GGTCTC 1 cut(s) 444
BsrI ACTGG 3 cut(s) 246, 303, 785
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 5 cut(s) 141, 351, 531, 548, 730
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 366, 564
Bst6I CTCTTC 1 cut(s) 584
BstACI GRCGYC 1 cut(s) 87
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 5 cut(s) 144, 354, 534, 551, 733
BstMAI GTCTC 3 cut(s) 203, 332, 444
BstMBI GATC 5 cut(s) 141, 351, 531, 548, 730
BstMWI GCNNNNNNNGC 3 cut(s) 62, 84, 500
BstNI CCWGG 2 cut(s) 366, 564
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 2 cut(s) 364, 562
BstSFI CTRYAG 3 cut(s) 27, 341, 495
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 327, 481
BstV2I GAAGAC 1 cut(s) 82
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 1 cut(s) 412
BtgZI GCGATG 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 239, 527
BtuMI TCGCGA 1 cut(s) 56
CfoI GCGC 1 cut(s) 340
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 76
CspCI CAANNNNNGTGG 2 cut(s) 588, 623
CviAII CATG 4 cut(s) 163, 455, 593, 755
CviJI RGCY 8 cut(s) 81, 168, 362, 412, 465, 494, 577, 773
CviKI_1 RGCY 8 cut(s) 81, 168, 362, 412, 465, 494, 577, 773
DpnI GATC 5 cut(s) 143, 353, 533, 550, 732
DpnII GATC 5 cut(s) 141, 351, 531, 548, 730
Eam1104I CTCTTC 1 cut(s) 584
EarI CTCTTC 1 cut(s) 584
EciI GGCGGA 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 364, 562
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 4 cut(s) 166, 458, 596, 758
FatI CATG 4 cut(s) 162, 454, 592, 754
FblI GTMKAC 2 cut(s) 48, 751
Fnu4HI GCNGC 3 cut(s) 79, 341, 495
Fsp4HI GCNGC 3 cut(s) 79, 341, 495
FspBI CTAG 2 cut(s) 324, 461
GlaI GCGC 1 cut(s) 339
GluI GCNGC 3 cut(s) 79, 341, 495
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 76
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 166, 458, 596, 758
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HincII GTYRAC 1 cut(s) 752
HindII GTYRAC 1 cut(s) 752
HinfI GANTC 5 cut(s) 117, 214, 388, 610, 681
HpaII CCGG 1 cut(s) 84
HphI GGTGA 2 cut(s) 289, 485
Hpy166II GTNNAC 2 cut(s) 49, 752
Hpy188I TCNGA 5 cut(s) 116, 332, 375, 524, 647
Hpy188III TCNNGA 2 cut(s) 55, 535
Hpy8I GTNNAC 2 cut(s) 49, 752
Hpy99I CGWCG 2 cut(s) 47, 541
HpyAV CCTTC 7 cut(s) 8, 14, 156, 173, 464, 638, 678
HpyCH4IV ACGT 2 cut(s) 45, 637
HpyCH4V TGCA 7 cut(s) 133, 187, 221, 343, 497, 690, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 84, 500
HpySE526I ACGT 2 cut(s) 45, 637
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 166, 458, 596, 758
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 5 cut(s) 141, 351, 531, 548, 730
LguI GCTCTTC 1 cut(s) 584
LmnI GCTCC 3 cut(s) 86, 367, 601
LpnPI CCDG 9 cut(s) 97, 149, 227, 284, 351, 378, 531, 549, 576
Lsp1109I GCAGC 2 cut(s) 327, 481
MaeI CTAG 2 cut(s) 324, 461
MaeII ACGT 2 cut(s) 45, 637
MaeIII GTNAC 2 cut(s) 473, 638
MalI GATC 5 cut(s) 143, 353, 533, 550, 732
MboI GATC 5 cut(s) 141, 351, 531, 548, 730
MboII GAAGA 6 cut(s) 60, 82, 261, 292, 571, 605
MflI RGATCY 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 529
MluCI AATT 3 cut(s) 173, 194, 712
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 7 cut(s) 25, 134, 237, 268, 423, 567, 729
MseI TTAA 2 cut(s) 291, 347
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 366, 564
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 2 cut(s) 366, 564
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 62, 84, 500
NdeII GATC 5 cut(s) 141, 351, 531, 548, 730
NlaIII CATG 4 cut(s) 166, 458, 596, 758
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 2 cut(s) 473, 638
NruI TCGCGA 1 cut(s) 56
NspI RCATGY 1 cut(s) 758
PciI ACATGT 1 cut(s) 754
PciSI GCTCTTC 1 cut(s) 584
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 5 cut(s) 117, 214, 388, 610, 681
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 80, 342, 496
PscI ACATGT 1 cut(s) 754
Psp6I CCWGG 2 cut(s) 364, 562
PspGI CCWGG 2 cut(s) 364, 562
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 566
PstI CTGCAG 2 cut(s) 345, 499
PsuI RGATCY 1 cut(s) 141
PsyI GACNNNGTC 1 cut(s) 110
RruI TCGCGA 1 cut(s) 56
SalI GTCGAC 1 cut(s) 750
SapI GCTCTTC 1 cut(s) 584
SaqAI TTAA 2 cut(s) 291, 347
SatI GCNGC 3 cut(s) 79, 341, 495
Sau3AI GATC 5 cut(s) 141, 351, 531, 548, 730
Sau96I GGNCC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 366, 564
SduI GDGCHC 1 cut(s) 529
SfcI CTRYAG 3 cut(s) 27, 341, 495
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
Sse9I AATT 3 cut(s) 173, 194, 712
SsiI CCGC 3 cut(s) 11, 63, 78
SspMI CTAG 2 cut(s) 324, 461
StyD4I CCNGG 2 cut(s) 364, 562
TaiI ACGT 2 cut(s) 48, 640
TaqI TCGA 2 cut(s) 536, 751
TasI AATT 3 cut(s) 173, 194, 712
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 5 cut(s) 117, 214, 388, 610, 681
Tru1I TTAA 2 cut(s) 291, 347
Tru9I TTAA 2 cut(s) 291, 347
TscAI CASTG 2 cut(s) 246, 534
TseFI GTSAC 2 cut(s) 473, 638
TseI GCWGC 2 cut(s) 340, 494
Tsp45I GTSAC 2 cut(s) 473, 638
TspDTI ATGAA 4 cut(s) 60, 326, 571, 581
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 246, 534
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 3 cut(s) 173, 194, 712
XceI RCATGY 1 cut(s) 758
XmiI GTMKAC 2 cut(s) 48, 751
XspI CTAG 2 cut(s) 324, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.