Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010766

Physical Location & Seq

Genomic Coordinates Forward (+)

53303334 .. 53304815

Gene Structure 1482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG341900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCGGCGCTGCGGAGAAAGCACGCCGGCGAAATGAGGGAAGCCAAGCGAGGGGTTCGAAGGTTCCAGAAGCTGATGCACGGCGTTTCGAATTTCCAAACGGCGCTGAAGACGGTCATCAGCGGAACTCCTCGGTTCCGAACAGCGCTTCTGATTCTCGGAGGGAATCCAATGCGACCTCAACACGTGTACGAATTGAGCTTCTCCGGAAATGTCAGTGGCAAAGAATTGGATTTTGCGAAAAGCAGAGCGGCGGAAGTGCTTTGTAGAAAAGCGATTCGGGGGTTGGTCTCGGAGAATGTTGGGTCTGTTTCGTATCCGGGTCCTTGGAAGCTGTTCCTGTTGGTTAAAGCTCCCTCTTCTTTCAATCAGCCTCTGCATTTTCTTCCCAAGCGAGGTTTTAAATACAGCAACAAGATTGTGCCTATGAGGCTAAGCTTCAAATGCAAAAACCAGAACCAGAACATTGATCAGTTTTCGCAAACGGGCAGCTCTGATGGGTTGGTTCAGTCTGCTCCGGATGGGGATGATTTTATATGGTTTCAATGTCGACATGTAATCAAGGGAATAGCATTTAACACAGTACCTGAAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p31comet

Protein Analysis

199

Amino Acids

22.29

Weight (kDa)

10.29

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180
fragaria_vesca	FvH4_2g23671 FvH4_2g23671 FvH4_2g23671 FvH4_2g23671
malus_domestica	MD11G1286600.v1.1
prunus_persica	Prupe.8G241900_v2.0.a1
pyrus_communis	pycom11g25410
rosa_chinensis	RchiOBHm_Chr6g0291141
rosa_multiflora	Rmu_co8299773.1_g000001
rosa_samantha	Rh6AG328300 Rh6BG335900 Rh6CG341900 Rh6DG329200
rosa_wichuraiana	Rw6G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	550
AccIII	TCCGGA	2 cut(s)	206, 517
AciI	CCGC	4 cut(s)	13, 123, 251, 254
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	128
AcvI	CACGTG	1 cut(s)	187
AfaI	GTAC	2 cut(s)	191, 585
AfeI	AGCGCT	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	51, 395
AflIII	ACRYGT	3 cut(s)	184, 186, 553
AgsI	TTSAA	3 cut(s)	367, 442, 545
AluBI	AGCT	6 cut(s)	73, 201, 334, 353, 438, 492
AluI	AGCT	6 cut(s)	73, 201, 334, 353, 438, 492
Alw26I	GTCTC	1 cut(s)	295
AlwNI	CAGNNNCTG	3 cut(s)	73, 376, 587
Aor13HI	TCCGGA	2 cut(s)	206, 517
Aor51HI	AGCGCT	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	10, 489
ApoI	RAATTY	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	335
AspLEI	GCGC	3 cut(s)	10, 106, 148
AspS9I	GGNCC	1 cut(s)	323
AsuC2I	CCSGG	1 cut(s)	321
AsuII	TTCGAA	2 cut(s)	58, 89
AvaII	GGWCC	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	187
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	2 cut(s)	491, 515
BceAI	ACGGC	2 cut(s)	97, 117
BciVI	GTATCC	1 cut(s)	327
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	295
BfoI	RGCGCY	3 cut(s)	11, 107, 149
BfuI	GTATCC	1 cut(s)	327
BglI	GCCNNNNNGGC	1 cut(s)	430
BisI	GCNGC	3 cut(s)	11, 252, 490
BlpI	GCTNAGC	1 cut(s)	434
BlsI	GCNGC	3 cut(s)	12, 253, 491
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	65, 137, 324
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	116
Bpu1102I	GCTNAGC	1 cut(s)	434
Bpu14I	TTCGAA	2 cut(s)	58, 89
BpuMI	CCSGG	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	131, 326
BsaWI	WCCGGW	2 cut(s)	206, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 395
Bse118I	RCCGGY	2 cut(s)	4, 26
BseAI	TCCGGA	2 cut(s)	206, 517
BseDI	CCNNGG	2 cut(s)	131, 326
BseGI	GGATG	2 cut(s)	526, 532
BseLI	CCNNNNNNNGG	2 cut(s)	51, 395
BseRI	GAGGAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	501
BsiSI	CCGG	5 cut(s)	5, 27, 207, 320, 518
BslI	CCNNNNNNNGG	2 cut(s)	51, 395
BsmAI	GTCTC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	295
Bsp119I	TTCGAA	2 cut(s)	58, 89
Bsp13I	TCCGGA	2 cut(s)	206, 517
Bsp143I	GATC	1 cut(s)	469
Bsp1720I	GCTNAGC	1 cut(s)	434
BspACI	CCGC	4 cut(s)	13, 123, 251, 254
BspEI	TCCGGA	2 cut(s)	206, 517
BspLI	GGNNCC	3 cut(s)	65, 137, 324
BspT104I	TTCGAA	2 cut(s)	58, 89
BspTNI	GGTCTC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	251
BsrFI	RCCGGY	2 cut(s)	4, 26
BssAI	RCCGGY	2 cut(s)	4, 26
BssECI	CCNNGG	2 cut(s)	131, 326
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	115, 583
Bst6I	CTCTTC	1 cut(s)	364
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	2 cut(s)	58, 89
BstC8I	GCNNGC	3 cut(s)	6, 24, 28
BstDEI	CTNAG	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	526, 532
BstH2I	RGCGCY	3 cut(s)	11, 107, 149
BstHHI	GCGC	3 cut(s)	10, 106, 148
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 19, 430, 444
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	526, 532
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	6, 24, 28
CaiI	CAGNNNCTG	3 cut(s)	73, 376, 587
CfoI	GCGC	3 cut(s)	10, 106, 148
Cfr10I	RCCGGY	2 cut(s)	4, 26
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	190, 584
CviAII	CATG	1 cut(s)	554
CviJI	RGCY	9 cut(s)	44, 73, 201, 334, 353, 373, 433, 438, 492
CviKI_1	RGCY	9 cut(s)	44, 73, 201, 334, 353, 373, 433, 438, 492
CviQI	GTAC	2 cut(s)	190, 584
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DraI	TTTAAA	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	364
EarI	CTCTTC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	323
Eco47III	AGCGCT	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	128
Eco72I	CACGTG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	1 cut(s)	557
FaiI	YATR	4 cut(s)	428, 536, 538, 555
FatI	CATG	1 cut(s)	553
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	3 cut(s)	11, 252, 490
FokI	GGATG	2 cut(s)	533, 539
Fsp4HI	GCNGC	3 cut(s)	11, 252, 490
GlaI	GCGC	3 cut(s)	9, 105, 147
GluI	GCNGC	3 cut(s)	11, 252, 490
HaeII	RGCGCY	3 cut(s)	11, 107, 149
HapII	CCGG	5 cut(s)	5, 27, 207, 320, 518
HhaI	GCGC	3 cut(s)	10, 106, 148
Hin1II	CATG	1 cut(s)	557
Hin6I	GCGC	3 cut(s)	8, 104, 146
HinP1I	GCGC	3 cut(s)	8, 104, 146
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	3 cut(s)	154, 166, 277
HpaII	CCGG	5 cut(s)	5, 27, 207, 320, 518
Hpy166II	GTNNAC	2 cut(s)	190, 551
Hpy188I	TCNGA	5 cut(s)	140, 153, 161, 295, 496
Hpy188III	TCNNGA	3 cut(s)	67, 207, 518
Hpy8I	GTNNAC	2 cut(s)	190, 551
HpyAV	CCTTC	2 cut(s)	54, 584
HpyCH4III	ACNGT	2 cut(s)	115, 583
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	79, 379, 447
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 19, 430, 444
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	557
HspAI	GCGC	3 cut(s)	8, 104, 146
Kpn2I	TCCGGA	2 cut(s)	206, 517
KroI	GCCGGC	2 cut(s)	4, 26
KroNI	GCCGGC	2 cut(s)	6, 28
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
LmnI	GCTCC	2 cut(s)	358, 520
LpnPI	CCDG	9 cut(s)	18, 40, 80, 220, 333, 353, 467, 473, 531
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	66
MaeII	ACGT	1 cut(s)	186
MalI	GATC	1 cut(s)	471
MbiI	CCGCTC	1 cut(s)	251
MboI	GATC	1 cut(s)	469
MboII	GAAGA	3 cut(s)	121, 351, 377
MluCI	AATT	3 cut(s)	91, 194, 227
MnlI	CCTC	9 cut(s)	30, 44, 141, 155, 189, 367, 384, 389, 423
MreI	CGCCGGCG	1 cut(s)	26
MroI	TCCGGA	2 cut(s)	206, 517
MroNI	GCCGGC	2 cut(s)	4, 26
MroXI	GAANNNNTTC	1 cut(s)	335
MseI	TTAA	3 cut(s)	348, 402, 576
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	5 cut(s)	5, 27, 207, 320, 518
MspR9I	CCNGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	10, 19, 430, 444
NaeI	GCCGGC	2 cut(s)	6, 28
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	469
NgoMIV	GCCGGC	2 cut(s)	4, 26
NlaIII	CATG	1 cut(s)	557
NlaIV	GGNNCC	3 cut(s)	65, 137, 324
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	2 cut(s)	58, 89
PciI	ACATGT	1 cut(s)	553
PdiI	GCCGGC	2 cut(s)	6, 28
PdmI	GAANNNNTTC	1 cut(s)	335
PfeI	GAWTC	3 cut(s)	154, 166, 277
PkrI	GCNGC	3 cut(s)	12, 253, 491
PmaCI	CACGTG	1 cut(s)	187
PmlI	CACGTG	1 cut(s)	187
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	323
PscI	ACATGT	1 cut(s)	553
Psp5II	RGGWCCY	1 cut(s)	323
PspCI	CACGTG	1 cut(s)	187
PspN4I	GGNNCC	3 cut(s)	65, 137, 324
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
PstNI	CAGNNNCTG	3 cut(s)	73, 376, 587
RsaI	GTAC	2 cut(s)	191, 585
RsaNI	GTAC	2 cut(s)	190, 584
SalI	GTCGAC	1 cut(s)	549
SaqAI	TTAA	3 cut(s)	348, 402, 576
SatI	GCNGC	3 cut(s)	11, 252, 490
Sau3AI	GATC	1 cut(s)	469
Sau96I	GGNCC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	66
SfuI	TTCGAA	2 cut(s)	58, 89
SgrAI	CRCCGGYG	1 cut(s)	26
SinI	GGWCC	1 cut(s)	323
Sse9I	AATT	3 cut(s)	91, 194, 227
SsiI	CCGC	4 cut(s)	13, 123, 251, 254
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	115, 583
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	3 cut(s)	58, 89, 550
TasI	AATT	3 cut(s)	91, 194, 227
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	3 cut(s)	154, 166, 277
Tru1I	TTAA	3 cut(s)	348, 402, 576
Tru9I	TTAA	3 cut(s)	348, 402, 576
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	2 cut(s)	10, 489
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.