Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010766

Physical Location & Seq

Genomic Coordinates Forward (+)

28244179 .. 28245465

Gene Structure 1287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g25410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGATCGCCGCCGACTCTCTGAACGGCTCTGTGATCTTCCACGCCATTAACGAAATCTCCGGTTTCGTGCTTTACATGCACCAGCAAATCCCTGCAATGTTGCAGGATATCACTCTGGAATTCGATTCGCTCTGTTCTGAGTACAAGGATTTGGAAATGGCGGTTCAGCAAAACGAGGTGAAGCCGTCGCTCCGTAGGAAGCACGCCGGCGAAATGCGGGAGGCGAAGCGCGGGATTCGGAGATTCGAAAAGCTGATGCGCCAGGTTTCCGACCTCCAAACTGCTCTGAAGCAGATGATCAACGAGGTTCGTGAGTTCCGAGACGCGATTCTGATAATCGGAGGGAGTCCGCTCCGACCTCAGCACGTCTACGAGCTGAGCTTTTCGAGCGGAACTGCTGTTTCGGAACTTGATTTTGCGAAAAGCAGGGCGTCGGAAGTGCTTTGTAGAAAAGCGATTCGGGGGCTGATTGCAAAGGGTGCTGGGTGTGCTGCTTATTCAGGGCCTTCCAAGATGTTTCTGCTGGTGAAGGCTCCGGCTTCTTTCAATCTGCCTCTCCATTTTCTTCCAAAGCGTGATTTCCGATACAGCAACAAGATTGTGCCTCTGAAACTAAAGATCAAGAGCAAAACCCAAGATCCGAAAACGGATGCTTCTTCTCAAAGTGGCAGCTCTGATGGTGTGGTTGAGTCTACTCCAAATGATTTTATATGGTTTCAATGCCGGCATGTAATAAAGGGTCTGGAATGTAACACACCAACTGACGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p31comet

Protein Analysis

259

Amino Acids

28.85

Weight (kDa)

8.9

Isoelectric Point (pI)

45.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180
fragaria_vesca	FvH4_2g23671 FvH4_2g23671 FvH4_2g23671 FvH4_2g23671
malus_domestica	MD11G1286600.v1.1
prunus_persica	Prupe.8G241900_v2.0.a1
pyrus_communis	pycom11g25410
rosa_chinensis	RchiOBHm_Chr6g0291141
rosa_multiflora	Rmu_co8299773.1_g000001
rosa_samantha	Rh6AG328300 Rh6BG335900 Rh6CG341900 Rh6DG329200
rosa_wichuraiana	Rw6G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	355, 393
AccI	GTMKAC	2 cut(s)	372, 695
AccII	CGCG	2 cut(s)	234, 329
AciI	CCGC	6 cut(s)	12, 164, 220, 234, 353, 393
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	767
AgsI	TTSAA	2 cut(s)	550, 722
AjiI	CACGTC	1 cut(s)	370
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	4 cut(s)	256, 379, 384, 675
AluI	AGCT	4 cut(s)	256, 379, 384, 675
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	635
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	494, 672
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	2 cut(s)	234, 264
AspS9I	GGNCC	1 cut(s)	506
AsuHPI	GGTGA	2 cut(s)	193, 541
AsuII	TTCGAA	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	481, 684
BccI	CCATC	1 cut(s)	674
BceAI	ACGGC	2 cut(s)	43, 172
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	318
BisI	GCNGC	3 cut(s)	12, 495, 673
BlpI	GCTNAGC	1 cut(s)	380
BlsI	GCNGC	3 cut(s)	13, 496, 674
Bme1390I	CCNGG	1 cut(s)	266
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	537
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	249, 643
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	380
Bpu14I	TTCGAA	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse118I	RCCGGY	2 cut(s)	209, 726
Bse3DI	GCAATG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	3 cut(s)	132, 371, 377
BseXI	GCAGC	2 cut(s)	481, 684
BseYI	CCCAGC	1 cut(s)	485
Bsh1236I	CGCG	2 cut(s)	234, 329
BshFI	GGCC	1 cut(s)	508
BsiSI	CCGG	4 cut(s)	63, 210, 539, 727
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	508
Bsp119I	TTCGAA	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	6, 36, 300, 621, 640
Bsp1720I	GCTNAGC	1 cut(s)	380
BspACI	CCGC	6 cut(s)	12, 164, 220, 234, 353, 393
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	3 cut(s)	133, 372, 376
BspFNI	CGCG	2 cut(s)	234, 329
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	249
BsrBI	CCGCTC	2 cut(s)	355, 393
BsrDI	GCAATG	1 cut(s)	105
BsrFI	RCCGGY	2 cut(s)	209, 726
BssAI	RCCGGY	2 cut(s)	209, 726
BssMI	GATC	5 cut(s)	6, 36, 300, 621, 640
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	266
BstACI	GRCGYC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	207, 211, 728
BstDEI	CTNAG	3 cut(s)	141, 363, 380
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	2 cut(s)	234, 329
BstHHI	GCGC	2 cut(s)	234, 264
BstKTI	GATC	5 cut(s)	9, 39, 303, 624, 643
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	6, 36, 300, 621, 640
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 390, 482, 491
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	2 cut(s)	82, 734
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	2 cut(s)	234, 329
BstV1I	GCAGC	2 cut(s)	481, 684
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BsuRI	GGCC	1 cut(s)	508
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	207, 211, 728
CfoI	GCGC	2 cut(s)	234, 264
Cfr10I	RCCGGY	2 cut(s)	209, 726
Cfr13I	GGNCC	1 cut(s)	506
CseI	GACGC	2 cut(s)	335, 423
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	2 cut(s)	79, 731
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	141, 363, 380
DpnI	GATC	5 cut(s)	8, 38, 302, 623, 642
DpnII	GATC	5 cut(s)	6, 36, 300, 621, 640
Eco32I	GATATC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	311
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	264
EcoRV	GATATC	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	2 cut(s)	82, 734
FaiI	YATR	4 cut(s)	80, 713, 715, 732
FatI	CATG	2 cut(s)	78, 730
FauI	CCCGC	2 cut(s)	213, 227
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	2 cut(s)	372, 695
Fnu4HI	GCNGC	3 cut(s)	12, 495, 673
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	3 cut(s)	12, 495, 673
GlaI	GCGC	2 cut(s)	233, 263
GluI	GCNGC	3 cut(s)	12, 495, 673
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	4 cut(s)	63, 210, 539, 727
HgaI	GACGC	2 cut(s)	335, 423
HhaI	GCGC	2 cut(s)	234, 264
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	2 cut(s)	82, 734
Hin6I	GCGC	2 cut(s)	232, 262
HinP1I	GCGC	2 cut(s)	232, 262
HinfI	GANTC	8 cut(s)	17, 128, 238, 246, 331, 349, 460, 692
HpaII	CCGG	4 cut(s)	63, 210, 539, 727
HphI	GGTGA	2 cut(s)	193, 541
Hpy166II	GTNNAC	2 cut(s)	373, 696
Hpy188III	TCNNGA	4 cut(s)	119, 314, 625, 746
Hpy8I	GTNNAC	2 cut(s)	373, 696
Hpy99I	CGWCG	2 cut(s)	193, 439
HpyAV	CCTTC	2 cut(s)	519, 526
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	82, 98, 106, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 390, 482, 491
HpyF3I	CTNAG	3 cut(s)	141, 363, 380
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	2 cut(s)	82, 734
HspAI	GCGC	2 cut(s)	232, 262
KroI	GCCGGC	2 cut(s)	209, 726
KroNI	GCCGGC	2 cut(s)	211, 728
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	6, 36, 300, 621, 640
LmnI	GCTCC	3 cut(s)	198, 360, 541
Lsp1109I	GCAGC	2 cut(s)	481, 684
LweI	GCATC	2 cut(s)	249, 643
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	5 cut(s)	8, 38, 302, 623, 642
MbiI	CCGCTC	2 cut(s)	355, 393
MboI	GATC	5 cut(s)	6, 36, 300, 621, 640
MboII	GAAGA	3 cut(s)	31, 560, 651
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	3 cut(s)	11, 358, 701
MmeI	TCCRAC	3 cut(s)	297, 382, 417
MnlI	CCTC	8 cut(s)	172, 217, 287, 301, 338, 372, 567, 618
MreI	CGCCGGCG	1 cut(s)	209
MroNI	GCCGGC	2 cut(s)	209, 726
MseI	TTAA	1 cut(s)	51
MspI	CCGG	4 cut(s)	63, 210, 539, 727
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	2 cut(s)	234, 329
MwoI	GCNNNNNNNGC	4 cut(s)	79, 390, 482, 491
NaeI	GCCGGC	2 cut(s)	211, 728
NdeII	GATC	5 cut(s)	6, 36, 300, 621, 640
NgoMIV	GCCGGC	2 cut(s)	209, 726
NlaIII	CATG	2 cut(s)	82, 734
NlaIV	GGNNCC	1 cut(s)	537
NspI	RCATGY	2 cut(s)	82, 734
NspV	TTCGAA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 319
PdiI	GCCGGC	2 cut(s)	211, 728
PfeI	GAWTC	5 cut(s)	128, 238, 246, 331, 460
PkrI	GCNGC	3 cut(s)	13, 496, 674
PleI	GAGTC	3 cut(s)	11, 357, 700
PpsI	GAGTC	3 cut(s)	11, 357, 700
Psp6I	CCWGG	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	640
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	12, 495, 673
Sau3AI	GATC	5 cut(s)	6, 36, 300, 621, 640
Sau96I	GGNCC	1 cut(s)	506
SchI	GAGTC	3 cut(s)	11, 358, 701
ScrFI	CCNGG	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	249, 643
SfuI	TTCGAA	1 cut(s)	249
SgrAI	CRCCGGYG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	6 cut(s)	12, 164, 220, 234, 353, 393
StyD4I	CCNGG	1 cut(s)	264
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	3 cut(s)	126, 249, 389
TasI	AATT	1 cut(s)	122
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	5 cut(s)	128, 238, 246, 331, 460
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	2 cut(s)	494, 672
TspGWI	ACGGA	2 cut(s)	185, 665
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	2 cut(s)	82, 734
XmiI	GTMKAC	2 cut(s)	372, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.