Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010766

Physical Location & Seq

Genomic Coordinates Forward (+)

40633837 .. 40635594

Gene Structure 1758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1286600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGATCGCCGCCGACTCTCTGGACGGCTCTGTGATCTTCCACGCCATTAACGAAATCTCCGGTTTCGTGCTTTACATGCACCAGCAAATCCCTGCAATGTTGCAGGATATCACTCTGGAATTCGATTCGCTCTGTTCTGAGTACAAGGATTTGGAAATGGCGGTTCAGCAAAACGAGGTGAAGCCGTCGCTCCGGAGGAAGCACGCCGGCGAAATGCGGGAGGCGAAGCGCGGGATTCGGAGATTCGAAAAGCTGATGCGTCAGGTTTCCGACCTCCAAACTGCTCTGAAGCAGATGATCAGCGAGGTTCATGAGTTCCGAGACGCGATTCTGATAGTCGGAGGGAGTCCGCTCCGACCTCAGCACGTCTATGAGCTGAGTTTTTCGAGCGGAACTGCTGTTTCCGAACTTGACTTTGCGAAAAGCAGGGCGTCGGAAGTGCTTTGTAGAAAAGCCATTCGGGGGCTGATTGCAAAGGGTGCTGGGTGTGCTGCTTATTCAGGGCCTTCCAAGCTGTTTCTGCTGGTGAAGGCTCCGGTTTCTTTCAATCTGCCTCTCCATTTTCTTCCAAAGCGTGATTTCCGATACAGCAACAAGATTGTGCCTCTGAAACTAAAGATCAAGAGCAAAACCCATGATCCGAAAACGGATGCTTCTTCTCAAACTGGCAGCTCTGATGGTGTGGTTGAGTCTACTCCAAATGATTTTATATGGTTTCAATGCCGGCATGTAATCAAGGGCCTCGAATGTAACACACCAACCGATGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p31comet

Protein Analysis

259

Amino Acids

28.83

Weight (kDa)

8.53

Isoelectric Point (pI)

41.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180
fragaria_vesca	FvH4_2g23671 FvH4_2g23671 FvH4_2g23671 FvH4_2g23671
malus_domestica	MD11G1286600.v1.1
prunus_persica	Prupe.8G241900_v2.0.a1
pyrus_communis	pycom11g25410
rosa_chinensis	RchiOBHm_Chr6g0291141
rosa_multiflora	Rmu_co8299773.1_g000001
rosa_samantha	Rh6AG328300 Rh6BG335900 Rh6CG341900 Rh6DG329200
rosa_wichuraiana	Rw6G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	767
AccBSI	CCGCTC	2 cut(s)	355, 393
AccI	GTMKAC	1 cut(s)	695
AccII	CGCG	2 cut(s)	234, 329
AccIII	TCCGGA	1 cut(s)	195
AciI	CCGC	6 cut(s)	12, 164, 220, 234, 353, 393
AclWI	GGATC	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	311
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	465, 767
AgsI	TTSAA	2 cut(s)	550, 722
AjiI	CACGTC	1 cut(s)	370
AluBI	AGCT	4 cut(s)	256, 379, 517, 675
AluI	AGCT	4 cut(s)	256, 379, 517, 675
Alw26I	GTCTC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	635
Aor13HI	TCCGGA	1 cut(s)	195
AoxI	GGCC	2 cut(s)	506, 742
ApeKI	GCWGC	2 cut(s)	494, 672
ApoI	RAATTY	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	506, 742
AsuHPI	GGTGA	2 cut(s)	193, 541
AsuII	TTCGAA	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	481, 684
BccI	CCATC	2 cut(s)	674, 761
BceAI	ACGGC	2 cut(s)	43, 172
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	318
BisI	GCNGC	3 cut(s)	12, 495, 673
BlsI	GCNGC	3 cut(s)	13, 496, 674
BmgBI	CACGTC	1 cut(s)	370
BmgT120I	GGNCC	2 cut(s)	506, 742
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	2 cut(s)	249, 643
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu14I	TTCGAA	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	434
BsaWI	WCCGGW	3 cut(s)	62, 195, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 767
Bse118I	RCCGGY	2 cut(s)	209, 726
Bse1I	ACTGG	1 cut(s)	673
Bse3DI	GCAATG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	195
BseGI	GGATG	1 cut(s)	658
BseLI	CCNNNNNNNGG	2 cut(s)	465, 767
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	3 cut(s)	132, 371, 377
BseNI	ACTGG	1 cut(s)	673
BseXI	GCAGC	2 cut(s)	481, 684
BseYI	CCCAGC	1 cut(s)	485
Bsh1236I	CGCG	2 cut(s)	234, 329
BshFI	GGCC	2 cut(s)	508, 744
BsiSI	CCGG	5 cut(s)	63, 196, 210, 539, 727
BslI	CCNNNNNNNGG	2 cut(s)	465, 767
BsmAI	GTCTC	1 cut(s)	318
BsmBI	CGTCTC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	508, 744
Bsp119I	TTCGAA	1 cut(s)	249
Bsp13I	TCCGGA	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	6, 36, 300, 621, 640
BspACI	CCGC	6 cut(s)	12, 164, 220, 234, 353, 393
BspANI	GGCC	2 cut(s)	508, 744
BspCNI	CTCAG	3 cut(s)	133, 372, 376
BspEI	TCCGGA	1 cut(s)	195
BspFNI	CGCG	2 cut(s)	234, 329
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	1 cut(s)	635
BspT104I	TTCGAA	1 cut(s)	249
BsrBI	CCGCTC	2 cut(s)	355, 393
BsrDI	GCAATG	1 cut(s)	105
BsrFI	RCCGGY	2 cut(s)	209, 726
BsrI	ACTGG	1 cut(s)	673
BssAI	RCCGGY	2 cut(s)	209, 726
BssMI	GATC	5 cut(s)	6, 36, 300, 621, 640
BssNI	GRCGYC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	3 cut(s)	207, 211, 728
BstDEI	CTNAG	3 cut(s)	141, 363, 380
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	2 cut(s)	234, 329
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	5 cut(s)	9, 39, 303, 624, 643
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	5 cut(s)	6, 36, 300, 621, 640
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 482, 491, 514, 523
BstNSI	RCATGY	2 cut(s)	82, 734
BstUI	CGCG	2 cut(s)	234, 329
BstV1I	GCAGC	2 cut(s)	481, 684
BsuRI	GGCC	2 cut(s)	508, 744
BtrI	CACGTC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	207, 211, 728
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	1 cut(s)	234
Cfr10I	RCCGGY	2 cut(s)	209, 726
Cfr13I	GGNCC	2 cut(s)	506, 742
CseI	GACGC	3 cut(s)	251, 335, 423
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	4 cut(s)	79, 314, 638, 731
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	141, 363, 380
DpnI	GATC	5 cut(s)	8, 38, 302, 623, 642
DpnII	GATC	5 cut(s)	6, 36, 300, 621, 640
Eco32I	GATATC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	311
EcoO109I	RGGNCCY	2 cut(s)	506, 742
EcoRI	GAATTC	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	4 cut(s)	82, 317, 641, 734
FaiI	YATR	7 cut(s)	80, 315, 375, 639, 713, 715, 732
FatI	CATG	4 cut(s)	78, 313, 637, 730
FauI	CCCGC	2 cut(s)	213, 227
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	695
Fnu4HI	GCNGC	3 cut(s)	12, 495, 673
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	3 cut(s)	12, 495, 673
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	3 cut(s)	12, 495, 673
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	508, 744
HapII	CCGG	5 cut(s)	63, 196, 210, 539, 727
HgaI	GACGC	3 cut(s)	251, 335, 423
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	4 cut(s)	82, 317, 641, 734
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	7 cut(s)	17, 128, 238, 246, 331, 349, 692
HpaII	CCGG	5 cut(s)	63, 196, 210, 539, 727
HphI	GGTGA	2 cut(s)	193, 541
Hpy166II	GTNNAC	1 cut(s)	696
Hpy188III	TCNNGA	5 cut(s)	23, 119, 196, 314, 625
Hpy8I	GTNNAC	1 cut(s)	696
Hpy99I	CGWCG	2 cut(s)	193, 439
HpyAV	CCTTC	2 cut(s)	519, 526
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	4 cut(s)	82, 98, 106, 476
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 482, 491, 514, 523
HpyF3I	CTNAG	3 cut(s)	141, 363, 380
HpySE526I	ACGT	1 cut(s)	369
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	82, 317, 641, 734
HspAI	GCGC	1 cut(s)	232
Kpn2I	TCCGGA	1 cut(s)	195
KroI	GCCGGC	2 cut(s)	209, 726
KroNI	GCCGGC	2 cut(s)	211, 728
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	6, 36, 300, 621, 640
LmnI	GCTCC	3 cut(s)	198, 360, 541
Lsp1109I	GCAGC	2 cut(s)	481, 684
LweI	GCATC	2 cut(s)	249, 643
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	5 cut(s)	8, 38, 302, 623, 642
MbiI	CCGCTC	2 cut(s)	355, 393
MboI	GATC	5 cut(s)	6, 36, 300, 621, 640
MboII	GAAGA	3 cut(s)	31, 560, 651
MluCI	AATT	1 cut(s)	122
MlyI	GAGTC	3 cut(s)	11, 358, 701
MmeI	TCCRAC	4 cut(s)	297, 322, 382, 417
MreI	CGCCGGCG	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	195
MroNI	GCCGGC	2 cut(s)	209, 726
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	372
MspI	CCGG	5 cut(s)	63, 196, 210, 539, 727
MvnI	CGCG	2 cut(s)	234, 329
MwoI	GCNNNNNNNGC	5 cut(s)	79, 482, 491, 514, 523
NaeI	GCCGGC	2 cut(s)	211, 728
NdeII	GATC	5 cut(s)	6, 36, 300, 621, 640
NgoMIV	GCCGGC	2 cut(s)	209, 726
NlaIII	CATG	4 cut(s)	82, 317, 641, 734
NlaIV	GGNNCC	1 cut(s)	537
NspI	RCATGY	2 cut(s)	82, 734
NspV	TTCGAA	1 cut(s)	249
PagI	TCATGA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	51
PdiI	GCCGGC	2 cut(s)	211, 728
PfeI	GAWTC	4 cut(s)	128, 238, 246, 331
PflMI	CCANNNNNTGG	1 cut(s)	767
PkrI	GCNGC	3 cut(s)	13, 496, 674
PleI	GAGTC	3 cut(s)	11, 357, 700
PpsI	GAGTC	3 cut(s)	11, 357, 700
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	537
PspPI	GGNCC	2 cut(s)	506, 742
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	372
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	3 cut(s)	12, 495, 673
Sau3AI	GATC	5 cut(s)	6, 36, 300, 621, 640
Sau96I	GGNCC	2 cut(s)	506, 742
SchI	GAGTC	3 cut(s)	11, 358, 701
SfaNI	GCATC	2 cut(s)	249, 643
SfuI	TTCGAA	1 cut(s)	249
SgrAI	CRCCGGYG	1 cut(s)	209
SmiMI	CAYNNNNRTG	1 cut(s)	372
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	6 cut(s)	12, 164, 220, 234, 353, 393
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	126, 249, 389, 747
TasI	AATT	1 cut(s)	122
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	4 cut(s)	128, 238, 246, 331
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TseI	GCWGC	2 cut(s)	494, 672
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	665
Van91I	CCANNNNNTGG	1 cut(s)	767
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	2 cut(s)	82, 734
XmiI	GTMKAC	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.