Prupe.8G241900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010766
Physical Location & Seq
Forward (+)
21165783 .. 21166972
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G241900.1

Sequence Viewer

Length: 774 bp
ATGGAGATCGCGGCGGACTCTCTGGACGGCTCTGTGATCTTCCACGCCATTAACGAAATCTCAGGTTTCGTGCTTTACATGCACCAGCAAATCCCTTCAACCTGCGACTTTCAGGAAATGGCTCTTCACCAAAACGAGGTGAAGCCAACGCTTCGGAGAAAGCACGCCGGCCAAATGAGGGAAGCCAAGCGCGGGATTCGAAGATTCCAGAAGCTGATGCGTCAAGTTTCTGATCTCCAAACTGCGCTGAAGCTGATGATCAGCGAGGTTCCTCAGTTCCAAGAAGCCATTTTGGTGATCGGAGCGAGTCCGCTACGGCCTCATCATGTCTATGAGTTGAGCTTTTCAAGCGCAAGCGCTGTTCCTAGTAGCAGTGGTGAACATGAACATGAAAAGGAACTTGATTTCGGCAAAAGCAGAGCGGCAGAAGTGCTTTGTAGAAAAGCGATTCGGGGGCTGATCTCAAAGGGTGCTGGGTGTGCTTCTTATCCAGGGCCTTCCAAGTTGTTTCTGTTGGTGAAAGCTCCCCCTTGTCTCAATCTGCCTCTGCATTTTCTTCCCAAACGTGATTTCAGATACAGCAACAAGATTGTGCCTTTAAGACTAAAGATTAAGAGAAAAACCCAAGATCAGAGCATGGATGCTCTTCCTGTTTCTTCTGAAACTGGCAGTTCTGATGGGTTGGTTGAGTCTGCTCCAAATGATTTTATATGGTTCCAATGTCGGCATGTAATCAAGGGCCTGGCATCTAACACACCGACTGAAGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p31comet

Protein Analysis

258

Amino Acids

28.65

Weight (kDa)

9.08

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 110
AccBSI CCGCTC 1 cut(s) 422
AccII CGCG 2 cut(s) 11, 192
AciI CCGC 5 cut(s) 11, 14, 192, 311, 422
AcoI YGGCCR 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 269
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 3 cut(s) 136, 178, 192
AgsI TTSAA 2 cut(s) 99, 348
AjnI CCWGG 2 cut(s) 490, 741
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AluBI AGCT 4 cut(s) 214, 253, 342, 524
AluI AGCT 4 cut(s) 214, 253, 342, 524
Alw26I GTCTC 1 cut(s) 539
AlwNI CAGNNNCTG 1 cut(s) 214
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 4 cut(s) 169, 317, 494, 739
AspLEI GCGC 4 cut(s) 192, 247, 353, 359
AspS9I GGNCC 2 cut(s) 494, 739
AsuHPI GGTGA 5 cut(s) 119, 151, 307, 389, 529
AsuII TTCGAA 1 cut(s) 199
BccI CCATC 1 cut(s) 671
BceAI ACGGC 2 cut(s) 43, 332
BciT130I CCWGG 2 cut(s) 492, 743
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 539
BfaI CTAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 2 cut(s) 12, 423
BlsI GCNGC 2 cut(s) 13, 424
Bme1390I CCNGG 2 cut(s) 492, 743
BmgT120I GGNCC 2 cut(s) 494, 739
BmiI GGNNCC 2 cut(s) 270, 716
BmrFI CCNGG 2 cut(s) 492, 743
BmsI GCATC 3 cut(s) 207, 631, 755
Bpu14I TTCGAA 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 178, 192
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 670
BseBI CCWGG 2 cut(s) 492, 743
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 1 cut(s) 646
BseLI CCNNNNNNNGG 3 cut(s) 136, 178, 192
BseMII CTCAG 2 cut(s) 75, 287
BseNI ACTGG 1 cut(s) 670
BseYI CCCAGC 1 cut(s) 473
Bsh1236I CGCG 2 cut(s) 11, 192
BshFI GGCC 4 cut(s) 171, 319, 496, 741
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 3 cut(s) 136, 178, 192
BsmAI GTCTC 1 cut(s) 539
BsnI GGCC 4 cut(s) 171, 319, 496, 741
Bsp119I TTCGAA 1 cut(s) 199
Bsp143I GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
BspACI CCGC 5 cut(s) 11, 14, 192, 311, 422
BspANI GGCC 4 cut(s) 171, 319, 496, 741
BspCNI CTCAG 2 cut(s) 74, 286
BspFNI CGCG 2 cut(s) 11, 192
BspLI GGNNCC 2 cut(s) 270, 716
BspMI ACCTGC 1 cut(s) 110
BspQI GCTCTTC 2 cut(s) 129, 651
BspT104I TTCGAA 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 670
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
Bst2UI CCWGG 2 cut(s) 492, 743
Bst6I CTCTTC 2 cut(s) 129, 651
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 3 cut(s) 165, 169, 355
BstDEI CTNAG 2 cut(s) 61, 273
BstF5I GGATG 1 cut(s) 646
BstFNI CGCG 2 cut(s) 11, 192
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 4 cut(s) 192, 247, 353, 359
BstKTI GATC 7 cut(s) 9, 39, 235, 261, 300, 462, 631
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
BstMWI GCNNNNNNNGC 3 cut(s) 79, 348, 479
BstNI CCWGG 2 cut(s) 492, 743
BstNSI RCATGY 2 cut(s) 82, 731
BstSCI CCNGG 2 cut(s) 490, 741
BstUI CGCG 2 cut(s) 11, 192
BsuRI GGCC 4 cut(s) 171, 319, 496, 741
BtsCI GGATG 1 cut(s) 646
BtsI GCAGTG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 379
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 3 cut(s) 165, 169, 355
CaiI CAGNNNCTG 1 cut(s) 214
CfoI GCGC 4 cut(s) 192, 247, 353, 359
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 494, 739
CseI GACGC 1 cut(s) 209
CviAII CATG 6 cut(s) 79, 326, 383, 389, 637, 728
DdeI CTNAG 2 cut(s) 61, 273
DpnI GATC 7 cut(s) 8, 38, 234, 260, 299, 461, 630
DpnII GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 129, 651
EarI CTCTTC 2 cut(s) 129, 651
EciI GGCGGA 1 cut(s) 29
Eco47III AGCGCT 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 269
EcoO109I RGGNCCY 2 cut(s) 494, 739
EcoRII CCWGG 2 cut(s) 490, 741
FaeI CATG 6 cut(s) 82, 329, 386, 392, 640, 731
FaiI YATR 9 cut(s) 80, 327, 333, 384, 390, 638, 710, 712, 729
FatI CATG 6 cut(s) 78, 325, 382, 388, 636, 727
FauI CCCGC 1 cut(s) 185
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 12, 423
FokI GGATG 1 cut(s) 653
Fsp4HI GCNGC 2 cut(s) 12, 423
FspBI CTAG 1 cut(s) 366
GlaI GCGC 4 cut(s) 191, 246, 352, 358
GluI GCNGC 2 cut(s) 12, 423
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 4 cut(s) 171, 319, 496, 741
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 209
HhaI GCGC 4 cut(s) 192, 247, 353, 359
Hin1II CATG 6 cut(s) 82, 329, 386, 392, 640, 731
Hin6I GCGC 4 cut(s) 190, 245, 351, 357
HinP1I GCGC 4 cut(s) 190, 245, 351, 357
HinfI GANTC 6 cut(s) 17, 196, 204, 307, 448, 689
HpaII CCGG 1 cut(s) 168
HphI GGTGA 5 cut(s) 119, 151, 307, 389, 529
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 7 cut(s) 156, 232, 302, 575, 633, 661, 676
Hpy188III TCNNGA 3 cut(s) 23, 113, 208
Hpy8I GTNNAC 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 105, 507
HpyCH4IV ACGT 1 cut(s) 565
HpyCH4V TGCA 2 cut(s) 82, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 348, 479
HpyF3I CTNAG 2 cut(s) 61, 273
HpySE526I ACGT 1 cut(s) 565
Hsp92II CATG 6 cut(s) 82, 329, 386, 392, 640, 731
HspAI GCGC 4 cut(s) 190, 245, 351, 357
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
LguI GCTCTTC 2 cut(s) 129, 651
LmnI GCTCC 3 cut(s) 302, 529, 700
LweI GCATC 3 cut(s) 207, 631, 755
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 565
MalI GATC 7 cut(s) 8, 38, 234, 260, 299, 461, 630
MbiI CCGCTC 1 cut(s) 422
MboI GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
MboII GAAGA 6 cut(s) 31, 116, 213, 548, 638, 648
MlyI GAGTC 3 cut(s) 11, 316, 698
MnlI CCTC 6 cut(s) 130, 171, 259, 282, 330, 555
MroNI GCCGGC 1 cut(s) 167
MseI TTAA 3 cut(s) 51, 599, 612
MslI CAYNNNNRTG 3 cut(s) 293, 330, 387
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 492, 743
MvaI CCWGG 2 cut(s) 492, 743
MvnI CGCG 2 cut(s) 11, 192
MwoI GCNNNNNNNGC 3 cut(s) 79, 348, 479
NaeI GCCGGC 1 cut(s) 169
NdeII GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 6 cut(s) 82, 329, 386, 392, 640, 731
NlaIV GGNNCC 2 cut(s) 270, 716
NspI RCATGY 2 cut(s) 82, 731
NspV TTCGAA 1 cut(s) 199
PciSI GCTCTTC 2 cut(s) 129, 651
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 169
PfeI GAWTC 3 cut(s) 196, 204, 448
PkrI GCNGC 2 cut(s) 13, 424
PleI GAGTC 3 cut(s) 11, 315, 697
PpsI GAGTC 3 cut(s) 11, 315, 697
Psp6I CCWGG 2 cut(s) 490, 741
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 2 cut(s) 490, 741
PspN4I GGNNCC 2 cut(s) 270, 716
PspPI GGNCC 2 cut(s) 494, 739
PstNI CAGNNNCTG 1 cut(s) 214
RseI CAYNNNNRTG 3 cut(s) 293, 330, 387
SapI GCTCTTC 2 cut(s) 129, 651
SaqAI TTAA 3 cut(s) 51, 599, 612
SatI GCNGC 2 cut(s) 12, 423
Sau3AI GATC 7 cut(s) 6, 36, 232, 258, 297, 459, 628
Sau96I GGNCC 2 cut(s) 494, 739
SchI GAGTC 3 cut(s) 11, 316, 698
ScrFI CCNGG 2 cut(s) 492, 743
SetI ASST 9 cut(s) 67, 104, 141, 216, 255, 270, 344, 526, 568
SfaNI GCATC 3 cut(s) 207, 631, 755
SfuI TTCGAA 1 cut(s) 199
SmiMI CAYNNNNRTG 3 cut(s) 293, 330, 387
SsiI CCGC 5 cut(s) 11, 14, 192, 311, 422
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 490, 741
TaiI ACGT 1 cut(s) 568
TaqI TCGA 1 cut(s) 199
TauI GCSGC 2 cut(s) 14, 425
TfiI GAWTC 3 cut(s) 196, 204, 448
Tru1I TTAA 3 cut(s) 51, 599, 612
Tru9I TTAA 3 cut(s) 51, 599, 612
TscAI CASTG 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 399, 405
TspRI CASTG 1 cut(s) 379
XceI RCATGY 2 cut(s) 82, 731
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.