Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010766

Physical Location & Seq

Genomic Coordinates Forward (+)

53034430 .. 53036138

Gene Structure 1709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG328300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGAGGGAAGCCAAGCGAGGGATTCGAAGGTTCCAGAAGCTGATGCACGGCGTTTCGAATTTCCAAACGGCGCTGAAGACGGTCATCAGCGGAACTCCTCGGTTCCGAACAGCGCTTCTGATTCTCGGAGGGAATCCAATGCGACCTCAGCACGTGTACGAATTGGGCTTCTCCGGAAATGTCAGTGGCGAAGAATTGGATTTTGCGAAAAGCAGAGCGGCGGAAGTGCTTTGTAGAAAAGCGATTCGGGGGTTGGTCTCGGAGAATGTTGGGTCTGTTTCGTATCCGGGTCCTTGGAAGCTGTTCCTGTTGGTTAAAGCTCCCTCTTCTTTCAATCAGCCTCTGCATTTTCTTCCCAAGCGAGATTTTAAATACAGCAACAAGATTGTGCCTATGAGGCTAAGCTTCAAATGCAAAAACCAGAACCAGAACATTGATCAGTTTTCGCAAACCGGCAGCTCTGATGGGTTGGTTCAGTCTGCTCCGGATGGGGATGATTTTATATGGTATGTCGAATTGGGAAGGAAGGCCCTGCACAACTTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p31comet

Protein Analysis

182

Amino Acids

20.52

Weight (kDa)

10.0

Isoelectric Point (pI)

28.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180
fragaria_vesca	FvH4_2g23671 FvH4_2g23671 FvH4_2g23671 FvH4_2g23671
malus_domestica	MD11G1286600.v1.1
prunus_persica	Prupe.8G241900_v2.0.a1
pyrus_communis	pycom11g25410
rosa_chinensis	RchiOBHm_Chr6g0291141
rosa_multiflora	Rmu_co8299773.1_g000001
rosa_samantha	Rh6AG328300 Rh6BG335900 Rh6CG341900 Rh6DG329200
rosa_wichuraiana	Rw6G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	218
AccIII	TCCGGA	2 cut(s)	173, 484
AciI	CCGC	3 cut(s)	90, 218, 221
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	95
AcvI	CACGTG	1 cut(s)	154
AfaI	GTAC	1 cut(s)	158
AfeI	AGCGCT	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	18
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	334, 409
AluBI	AGCT	5 cut(s)	40, 301, 320, 405, 459
AluI	AGCT	5 cut(s)	40, 301, 320, 405, 459
Alw26I	GTCTC	1 cut(s)	262
AlwNI	CAGNNNCTG	2 cut(s)	40, 343
Aor13HI	TCCGGA	2 cut(s)	173, 484
Aor51HI	AGCGCT	1 cut(s)	114
AoxI	GGCC	1 cut(s)	528
ApeKI	GCWGC	1 cut(s)	456
ApoI	RAATTY	1 cut(s)	58
Asp700I	GAANNNNTTC	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	73, 115
AspS9I	GGNCC	2 cut(s)	290, 529
AsuC2I	CCSGG	1 cut(s)	288
AsuII	TTCGAA	2 cut(s)	25, 56
AvaII	GGWCC	1 cut(s)	290
BbrPI	CACGTG	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	83
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	468
BccI	CCATC	2 cut(s)	458, 482
BceAI	ACGGC	2 cut(s)	64, 84
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	262
BfoI	RGCGCY	2 cut(s)	74, 116
BfuI	GTATCC	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	397
BisI	GCNGC	2 cut(s)	219, 457
BlpI	GCTNAGC	1 cut(s)	401
BlsI	GCNGC	2 cut(s)	220, 458
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 529
BmiI	GGNNCC	3 cut(s)	32, 104, 291
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	401
Bpu14I	TTCGAA	2 cut(s)	25, 56
BpuMI	CCSGG	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	2 cut(s)	98, 293
BsaWI	WCCGGW	2 cut(s)	173, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse118I	RCCGGY	1 cut(s)	452
BseAI	TCCGGA	2 cut(s)	173, 484
BseDI	CCNNGG	2 cut(s)	98, 293
BseGI	GGATG	2 cut(s)	493, 499
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	468
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	1 cut(s)	530
BsiSI	CCGG	4 cut(s)	174, 287, 453, 485
BslI	CCNNNNNNNGG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	530
Bso31I	GGTCTC	1 cut(s)	262
Bsp119I	TTCGAA	2 cut(s)	25, 56
Bsp13I	TCCGGA	2 cut(s)	173, 484
Bsp143I	GATC	1 cut(s)	436
Bsp1720I	GCTNAGC	1 cut(s)	401
BspACI	CCGC	3 cut(s)	90, 218, 221
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	1 cut(s)	160
BspEI	TCCGGA	2 cut(s)	173, 484
BspLI	GGNNCC	3 cut(s)	32, 104, 291
BspT104I	TTCGAA	2 cut(s)	25, 56
BspTNI	GGTCTC	1 cut(s)	262
BsrBI	CCGCTC	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	452
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	98, 293
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	154
BstBI	TTCGAA	2 cut(s)	25, 56
BstDEI	CTNAG	2 cut(s)	147, 401
BstF5I	GGATG	2 cut(s)	493, 499
BstH2I	RGCGCY	2 cut(s)	74, 116
BstHHI	GCGC	2 cut(s)	73, 115
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 397, 411
BstSCI	CCNGG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	468
BstV2I	GAAGAC	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	493, 499
BtsIMutI	CAGTG	1 cut(s)	190
CaiI	CAGNNNCTG	2 cut(s)	40, 343
CfoI	GCGC	2 cut(s)	73, 115
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	290, 529
Csp6I	GTAC	1 cut(s)	157
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	147, 401
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
DraI	TTTAAA	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
EciI	GGCGGA	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	293
Eco31I	GGTCTC	1 cut(s)	262
Eco47I	GGWCC	1 cut(s)	290
Eco47III	AGCGCT	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	95
Eco72I	CACGTG	1 cut(s)	154
EcoO109I	RGGNCCY	2 cut(s)	290, 529
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
FaiI	YATR	4 cut(s)	395, 503, 505, 510
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	219, 457
FokI	GGATG	2 cut(s)	500, 506
Fsp4HI	GCNGC	2 cut(s)	219, 457
GlaI	GCGC	2 cut(s)	72, 114
GluI	GCNGC	2 cut(s)	219, 457
HaeII	RGCGCY	2 cut(s)	74, 116
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	4 cut(s)	174, 287, 453, 485
HhaI	GCGC	2 cut(s)	73, 115
Hin6I	GCGC	2 cut(s)	71, 113
HinP1I	GCGC	2 cut(s)	71, 113
HindIII	AAGCTT	1 cut(s)	403
HinfI	GANTC	4 cut(s)	22, 121, 133, 244
HpaII	CCGG	4 cut(s)	174, 287, 453, 485
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	5 cut(s)	107, 120, 128, 262, 463
Hpy188III	TCNNGA	3 cut(s)	34, 174, 485
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	21, 516, 520
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	4 cut(s)	46, 346, 414, 535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 397, 411
HpyF3I	CTNAG	2 cut(s)	147, 401
HpySE526I	ACGT	1 cut(s)	153
HspAI	GCGC	2 cut(s)	71, 113
Kpn2I	TCCGGA	2 cut(s)	173, 484
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	2 cut(s)	325, 487
LpnPI	CCDG	9 cut(s)	47, 187, 300, 320, 434, 440, 466, 498, 545
Lsp1109I	GCAGC	1 cut(s)	468
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	153
MalI	GATC	1 cut(s)	438
MbiI	CCGCTC	1 cut(s)	218
MboI	GATC	1 cut(s)	436
MboII	GAAGA	4 cut(s)	88, 203, 318, 344
MluCI	AATT	4 cut(s)	58, 161, 194, 515
MnlI	CCTC	7 cut(s)	11, 108, 122, 156, 334, 351, 390
MroI	TCCGGA	2 cut(s)	173, 484
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	2 cut(s)	315, 369
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	4 cut(s)	174, 287, 453, 485
MspR9I	CCNGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	148, 397, 411
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	1 cut(s)	436
NlaIV	GGNNCC	3 cut(s)	32, 104, 291
NspV	TTCGAA	2 cut(s)	25, 56
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	4 cut(s)	22, 121, 133, 244
PkrI	GCNGC	2 cut(s)	220, 458
PmaCI	CACGTG	1 cut(s)	154
PmlI	CACGTG	1 cut(s)	154
Ppu21I	YACGTR	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	290
Psp5II	RGGWCCY	1 cut(s)	290
PspCI	CACGTG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	32, 104, 291
PspPI	GGNCC	2 cut(s)	290, 529
PspPPI	RGGWCCY	1 cut(s)	290
PstNI	CAGNNNCTG	2 cut(s)	40, 343
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	315, 369
SatI	GCNGC	2 cut(s)	219, 457
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	2 cut(s)	290, 529
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	8 cut(s)	32, 42, 148, 156, 303, 322, 407, 461
SfaNI	GCATC	1 cut(s)	33
SfuI	TTCGAA	2 cut(s)	25, 56
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	4 cut(s)	58, 161, 194, 515
SsiI	CCGC	3 cut(s)	90, 218, 221
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	25, 56, 513
TasI	AATT	4 cut(s)	58, 161, 194, 515
TauI	GCSGC	1 cut(s)	221
TfiI	GAWTC	4 cut(s)	22, 121, 133, 244
Tru1I	TTAA	2 cut(s)	315, 369
Tru9I	TTAA	2 cut(s)	315, 369
TscAI	CASTG	1 cut(s)	190
TseI	GCWGC	1 cut(s)	456
TspRI	CASTG	1 cut(s)	190
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	58
XmnI	GAANNNNTTC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.