Rh6DG329200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010766
Physical Location & Seq
Forward (+)
53375656 .. 53377334
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG329200.1

Sequence Viewer

Length: 633 bp
ATGGAGTTCACGGCCAACTCTCTGGACGGCTCCGTCATCTTCCACGCCATTAACGAAATCTCAAGTTTCCTACTCTTCATGCACCAGCAAATCCCCGCAGTGTTGCAGGACATCACCGCGGAATTCGATTCCCGCTGCGACGAGTACAAGGCCTTGGAATCGGCTCTGAGAGAAGACCAGGTGAAGCCGGCGCTGCGGAGAAAGCACGCCGGCGAAATGAGGGAAGCCAAGCGAGGGATTCGAAGGTTCCAGAAGCTGATGCACGGCGTTTCGAATTTCCAAACGGCGCTGAAGACGATCATCAGCGGAACTCCTCGGTTCCGAACAGCGCTTCTGATTCTCGGAGGGAATCCAATGCGGCCTCAACACGTGTACGAATTGAGCTTCTCCGGAAATTTAATTCCTCCCGGTGGCGAAGAAATTGATTTTGCGAAAAGCAGAGCGGCGGAAGTGCTTTGTAGAAAAGCGATTCGGGGGTTGGTCTCGGAGAATGTTGGGTCTGTTTCGTATCCGGGTCCTTGGAAGCTGTTCCTGTTGGTTAAAGCTCCCTCTTCTTTCAATCAGCCTCTGCATTTTCTTCCCAAGCGAGATTTTAAATACAGCAACAAGGTAATTGCAACTGCATTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p31comet

Protein Analysis

210

Amino Acids

23.57

Weight (kDa)

9.54

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 443
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 389
AciI CCGC 9 cut(s) 96, 117, 119, 133, 196, 306, 358, 443, 446
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 3 cut(s) 122, 274, 394
AcuI CTGAAG 1 cut(s) 311
AcvI CACGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 146, 374
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 2 cut(s) 234, 410
AflIII ACRYGT 2 cut(s) 367, 369
AgsI TTSAA 1 cut(s) 559
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 4 cut(s) 256, 384, 526, 545
AluI AGCT 4 cut(s) 256, 384, 526, 545
Alw26I GTCTC 1 cut(s) 487
AlwNI CAGNNNCTG 2 cut(s) 256, 568
Aor13HI TCCGGA 1 cut(s) 389
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 3 cut(s) 12, 150, 359
ApeKI GCWGC 2 cut(s) 135, 193
ApoI RAATTY 3 cut(s) 122, 274, 394
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 3 cut(s) 193, 289, 331
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 408, 513
AsuHPI GGTGA 2 cut(s) 106, 193
AsuII TTCGAA 2 cut(s) 241, 272
AvaII GGWCC 1 cut(s) 515
BbrPI CACGTG 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 180, 299
BbvI GCAGC 2 cut(s) 122, 180
BceAI ACGGC 4 cut(s) 27, 43, 280, 300
BciT130I CCWGG 1 cut(s) 179
BciVI GTATCC 1 cut(s) 519
BcnI CCSGG 2 cut(s) 408, 513
BcoDI GTCTC 1 cut(s) 487
BfoI RGCGCY 3 cut(s) 194, 290, 332
BfuI GTATCC 1 cut(s) 519
BisI GCNGC 4 cut(s) 136, 194, 359, 444
BlsI GCNGC 4 cut(s) 137, 195, 360, 445
Bme1390I CCNGG 3 cut(s) 179, 408, 513
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 4 cut(s) 31, 248, 320, 516
BmrFI CCNGG 3 cut(s) 179, 408, 513
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 180, 299
Bpu14I TTCGAA 2 cut(s) 241, 272
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 2 cut(s) 408, 513
BsaAI YACGTR 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 4 cut(s) 117, 153, 314, 518
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 410
Bse118I RCCGGY 2 cut(s) 187, 209
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 4 cut(s) 117, 153, 314, 518
BseLI CCNNNNNNNGG 2 cut(s) 234, 410
BseMII CTCAG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 122, 180
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 14, 152, 361
BsiSI CCGG 5 cut(s) 188, 210, 390, 408, 512
BslI CCNNNNNNNGG 2 cut(s) 234, 410
BsmAI GTCTC 1 cut(s) 487
BsnI GGCC 3 cut(s) 14, 152, 361
Bso31I GGTCTC 1 cut(s) 487
Bsp119I TTCGAA 2 cut(s) 241, 272
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 1 cut(s) 297
BspACI CCGC 9 cut(s) 96, 117, 119, 133, 196, 306, 358, 443, 446
BspANI GGCC 3 cut(s) 14, 152, 361
BspCNI CTCAG 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 389
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 4 cut(s) 31, 248, 320, 516
BspT104I TTCGAA 2 cut(s) 241, 272
BspTNI GGTCTC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 443
BsrFI RCCGGY 2 cut(s) 187, 209
BssAI RCCGGY 2 cut(s) 187, 209
BssECI CCNNGG 4 cut(s) 117, 153, 314, 518
BssMI GATC 1 cut(s) 297
BssT1I CCWWGG 2 cut(s) 153, 518
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 80, 556
BstBAI YACGTR 1 cut(s) 370
BstBI TTCGAA 2 cut(s) 241, 272
BstC8I GCNNGC 3 cut(s) 189, 207, 211
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 117
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 3 cut(s) 194, 290, 332
BstHHI GCGC 3 cut(s) 193, 289, 331
BstKTI GATC 1 cut(s) 300
BstMAI GTCTC 1 cut(s) 487
BstMBI GATC 1 cut(s) 297
BstMWI GCNNNNNNNGC 2 cut(s) 193, 202
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 3 cut(s) 177, 406, 511
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 122, 180
BstV2I GAAGAC 2 cut(s) 180, 299
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 3 cut(s) 14, 152, 361
BtgI CCRYGG 1 cut(s) 117
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 189, 207, 211
CaiI CAGNNNCTG 2 cut(s) 256, 568
CfoI GCGC 3 cut(s) 193, 289, 331
Cfr10I RCCGGY 2 cut(s) 187, 209
Cfr13I GGNCC 1 cut(s) 515
Cfr42I CCGCGG 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 2 cut(s) 145, 373
CviAII CATG 1 cut(s) 79
CviQI GTAC 2 cut(s) 145, 373
DdeI CTNAG 1 cut(s) 167
DpnI GATC 1 cut(s) 299
DpnII GATC 1 cut(s) 297
DraI TTTAAA 1 cut(s) 595
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 80, 556
EarI CTCTTC 2 cut(s) 80, 556
EciI GGCGGA 1 cut(s) 461
Eco130I CCWWGG 2 cut(s) 153, 518
Eco147I AGGCCT 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 1 cut(s) 515
Eco47III AGCGCT 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 311
Eco72I CACGTG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 153, 518
ErhI CCWWGG 2 cut(s) 153, 518
FaeI CATG 1 cut(s) 82
FaiI YATR 1 cut(s) 80
FatI CATG 1 cut(s) 78
FauI CCCGC 2 cut(s) 103, 140
Fnu4HI GCNGC 4 cut(s) 136, 194, 359, 444
Fsp4HI GCNGC 4 cut(s) 136, 194, 359, 444
GlaI GCGC 3 cut(s) 192, 288, 330
GluI GCNGC 4 cut(s) 136, 194, 359, 444
HaeII RGCGCY 3 cut(s) 194, 290, 332
HaeIII GGCC 3 cut(s) 14, 152, 361
HapII CCGG 5 cut(s) 188, 210, 390, 408, 512
HhaI GCGC 3 cut(s) 193, 289, 331
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 3 cut(s) 191, 287, 329
HinP1I GCGC 3 cut(s) 191, 287, 329
HinfI GANTC 6 cut(s) 128, 158, 238, 337, 349, 469
HpaII CCGG 5 cut(s) 188, 210, 390, 408, 512
HphI GGTGA 2 cut(s) 106, 193
Hpy166II GTNNAC 2 cut(s) 9, 373
Hpy188I TCNGA 5 cut(s) 168, 323, 336, 344, 487
Hpy188III TCNNGA 3 cut(s) 23, 250, 390
Hpy8I GTNNAC 2 cut(s) 9, 373
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 237
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 6 cut(s) 82, 106, 262, 571, 617, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 193, 202
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 3 cut(s) 191, 287, 329
Kpn2I TCCGGA 1 cut(s) 389
KroI GCCGGC 2 cut(s) 187, 209
KroNI GCCGGC 2 cut(s) 189, 211
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 297
LmnI GCTCC 2 cut(s) 35, 550
Lsp1109I GCAGC 2 cut(s) 122, 180
LweI GCATC 1 cut(s) 249
MabI ACCWGGT 1 cut(s) 177
MaeII ACGT 1 cut(s) 369
MalI GATC 1 cut(s) 299
MbiI CCGCTC 1 cut(s) 443
MboI GATC 1 cut(s) 297
MboII GAAGA 7 cut(s) 31, 67, 185, 304, 428, 543, 569
MluCI AATT 7 cut(s) 122, 274, 377, 394, 399, 420, 612
MnlI CCTC 8 cut(s) 213, 227, 324, 338, 372, 414, 559, 576
MreI CGCCGGCG 1 cut(s) 209
MroI TCCGGA 1 cut(s) 389
MroNI GCCGGC 2 cut(s) 187, 209
MroXI GAANNNNTTC 1 cut(s) 527
MseI TTAA 5 cut(s) 51, 398, 540, 594, 631
MspA1I CMGCKG 3 cut(s) 119, 135, 306
MspI CCGG 5 cut(s) 188, 210, 390, 408, 512
MspR9I CCNGG 3 cut(s) 179, 408, 513
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 193, 202
NaeI GCCGGC 2 cut(s) 189, 211
NciI CCSGG 2 cut(s) 408, 513
NdeII GATC 1 cut(s) 297
NgoMIV GCCGGC 2 cut(s) 187, 209
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 4 cut(s) 31, 248, 320, 516
NspV TTCGAA 2 cut(s) 241, 272
PceI AGGCCT 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 2 cut(s) 189, 211
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 6 cut(s) 128, 158, 238, 337, 349, 469
PkrI GCNGC 4 cut(s) 137, 195, 360, 445
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 1 cut(s) 177
PspCI CACGTG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 4 cut(s) 31, 248, 320, 516
PspPI GGNCC 1 cut(s) 515
PspPPI RGGWCCY 1 cut(s) 515
PstNI CAGNNNCTG 2 cut(s) 256, 568
RsaI GTAC 2 cut(s) 146, 374
RsaNI GTAC 2 cut(s) 145, 373
SacII CCGCGG 1 cut(s) 120
SaqAI TTAA 5 cut(s) 51, 398, 540, 594, 631
SatI GCNGC 4 cut(s) 136, 194, 359, 444
Sau3AI GATC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 515
ScrFI CCNGG 3 cut(s) 179, 408, 513
SetI ASST 8 cut(s) 183, 248, 258, 372, 386, 528, 547, 612
SexAI ACCWGGT 1 cut(s) 177
SfaNI GCATC 1 cut(s) 249
Sfr303I CCGCGG 1 cut(s) 120
SfuI TTCGAA 2 cut(s) 241, 272
SgrAI CRCCGGYG 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 1 cut(s) 515
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 7 cut(s) 122, 274, 377, 394, 399, 420, 612
SseBI AGGCCT 1 cut(s) 152
SsiI CCGC 9 cut(s) 96, 117, 119, 133, 196, 306, 358, 443, 446
StuI AGGCCT 1 cut(s) 152
StyD4I CCNGG 3 cut(s) 177, 406, 511
StyI CCWWGG 2 cut(s) 153, 518
TaiI ACGT 1 cut(s) 372
TaqI TCGA 3 cut(s) 126, 241, 272
TasI AATT 7 cut(s) 122, 274, 377, 394, 399, 420, 612
TatI WGTACW 1 cut(s) 144
TauI GCSGC 2 cut(s) 361, 446
TfiI GAWTC 6 cut(s) 128, 158, 238, 337, 349, 469
Tru1I TTAA 5 cut(s) 51, 398, 540, 594, 631
Tru9I TTAA 5 cut(s) 51, 398, 540, 594, 631
TscAI CASTG 1 cut(s) 105
TseI GCWGC 2 cut(s) 135, 193
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 3 cut(s) 122, 274, 394
XmnI GAANNNNTTC 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.