Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010766

Physical Location & Seq

Genomic Coordinates Forward (+)

56904078 .. 56905519

Gene Structure 1442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGGGAAGCCAAGCGAGGGATTCGAAGGTTCCAGAAGCTGATGCACGGCGTTTCGAATTTCCAAACGGCGCTGAAGACGATCATCAGCGGAACTCCTCGGTTCCGAACAGCGCTTCTGATTCTCGGAGGGAATCCAATGCGACCTCAACACGTCTATGAATTGAGCTTCTCCGGAAATTTAATTCCTCCCGGTGGCGAAGAAATTGATTTTGCGAAAAGCAGATCGGCGGAAGTGCTTTGTAGAAAAGCGATTCGGGGGTTGGTCTCGGAGAATGTTGGGTCTGTTTCGTATCCGGGTCCTTGGAAGCTGTTCCTGTTGGTTAAAGCTCCCTCTTCTTTCAATCAGCCTCTGCATTTTCTTCCCAAGCGAGATTTTAAATACAGCAACAAGATTTTGCCTATGAGGCTAAGCTTCAAATGCAAAAACCAGAACCAGAACATTGATCAGTTTTCGCAAACCGGCAGCTCTGATGGGTTGGTTGAGTCTGCTCCGGATGGTGATGATTTTATATGGTTTCAATGTCGACATGTAATCAAGGGAATAGCATTTAACACAGTACCTGAAGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p31comet

Protein Analysis

191

Amino Acids

21.46

Weight (kDa)

9.81

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010766)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180 AT1G03180
fragaria_vesca	FvH4_2g23671 FvH4_2g23671 FvH4_2g23671 FvH4_2g23671
malus_domestica	MD11G1286600.v1.1
prunus_persica	Prupe.8G241900_v2.0.a1
pyrus_communis	pycom11g25410
rosa_chinensis	RchiOBHm_Chr6g0291141
rosa_multiflora	Rmu_co8299773.1_g000001
rosa_samantha	Rh6AG328300 Rh6BG335900 Rh6CG341900 Rh6DG329200
rosa_wichuraiana	Rw6G028560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	526
AccIII	TCCGGA	2 cut(s)	173, 493
AciI	CCGC	2 cut(s)	90, 230
AcsI	RAATTY	2 cut(s)	58, 178
AcuI	CTGAAG	1 cut(s)	95
AfaI	GTAC	1 cut(s)	561
AfeI	AGCGCT	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	18, 194
AflIII	ACRYGT	2 cut(s)	151, 529
AgsI	TTSAA	3 cut(s)	343, 418, 521
AjiI	CACGTC	1 cut(s)	154
AluBI	AGCT	6 cut(s)	40, 168, 310, 329, 414, 468
AluI	AGCT	6 cut(s)	40, 168, 310, 329, 414, 468
Alw26I	GTCTC	1 cut(s)	271
AlwNI	CAGNNNCTG	3 cut(s)	40, 352, 563
Aor13HI	TCCGGA	2 cut(s)	173, 493
Aor51HI	AGCGCT	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	465
ApoI	RAATTY	2 cut(s)	58, 178
Asp700I	GAANNNNTTC	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	73, 115
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	2 cut(s)	192, 297
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	2 cut(s)	25, 56
AvaII	GGWCC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	477
BccI	CCATC	2 cut(s)	467, 491
BceAI	ACGGC	2 cut(s)	64, 84
BciVI	GTATCC	1 cut(s)	303
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	2 cut(s)	192, 297
BcoDI	GTCTC	1 cut(s)	271
BfoI	RGCGCY	2 cut(s)	74, 116
BfuI	GTATCC	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	406
BisI	GCNGC	1 cut(s)	466
BlpI	GCTNAGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	467
Bme1390I	CCNGG	2 cut(s)	192, 297
Bme18I	GGWCC	1 cut(s)	299
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	3 cut(s)	32, 104, 300
BmrFI	CCNGG	2 cut(s)	192, 297
BmsI	GCATC	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	83
Bpu1102I	GCTNAGC	1 cut(s)	410
Bpu14I	TTCGAA	2 cut(s)	25, 56
BpuMI	CCSGG	2 cut(s)	192, 297
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	98, 302
BsaWI	WCCGGW	2 cut(s)	173, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	18, 194
Bse118I	RCCGGY	1 cut(s)	461
BseAI	TCCGGA	2 cut(s)	173, 493
BseDI	CCNNGG	2 cut(s)	98, 302
BseGI	GGATG	1 cut(s)	502
BseLI	CCNNNNNNNGG	2 cut(s)	18, 194
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	477
BsiSI	CCGG	5 cut(s)	174, 192, 296, 462, 494
BslI	CCNNNNNNNGG	2 cut(s)	18, 194
BsmAI	GTCTC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	271
Bsp119I	TTCGAA	2 cut(s)	25, 56
Bsp13I	TCCGGA	2 cut(s)	173, 493
Bsp143I	GATC	3 cut(s)	81, 224, 445
Bsp1720I	GCTNAGC	1 cut(s)	410
BspACI	CCGC	2 cut(s)	90, 230
BspEI	TCCGGA	2 cut(s)	173, 493
BspLI	GGNNCC	3 cut(s)	32, 104, 300
BspT104I	TTCGAA	2 cut(s)	25, 56
BspTNI	GGTCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	461
BssAI	RCCGGY	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	98, 302
BssMI	GATC	3 cut(s)	81, 224, 445
BssT1I	CCWWGG	1 cut(s)	302
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	340
BstBI	TTCGAA	2 cut(s)	25, 56
BstDEI	CTNAG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	502
BstH2I	RGCGCY	2 cut(s)	74, 116
BstHHI	GCGC	2 cut(s)	73, 115
BstKTI	GATC	3 cut(s)	84, 227, 448
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	3 cut(s)	81, 224, 445
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 420
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	2 cut(s)	190, 295
BstV1I	GCAGC	1 cut(s)	477
BstV2I	GAAGAC	1 cut(s)	83
BsuI	GTATCC	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	502
CaiI	CAGNNNCTG	3 cut(s)	40, 352, 563
CfoI	GCGC	2 cut(s)	73, 115
Cfr10I	RCCGGY	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	560
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	9 cut(s)	11, 40, 168, 310, 329, 349, 409, 414, 468
CviKI_1	RGCY	9 cut(s)	11, 40, 168, 310, 329, 349, 409, 414, 468
CviQI	GTAC	1 cut(s)	560
DdeI	CTNAG	1 cut(s)	410
DpnI	GATC	3 cut(s)	83, 226, 447
DpnII	GATC	3 cut(s)	81, 224, 445
DraI	TTTAAA	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	299
Eco47III	AGCGCT	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	1 cut(s)	533
FaiI	YATR	5 cut(s)	159, 404, 512, 514, 531
FatI	CATG	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	526
Fnu4HI	GCNGC	1 cut(s)	466
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	1 cut(s)	466
GlaI	GCGC	2 cut(s)	72, 114
GluI	GCNGC	1 cut(s)	466
HaeII	RGCGCY	2 cut(s)	74, 116
HapII	CCGG	5 cut(s)	174, 192, 296, 462, 494
HhaI	GCGC	2 cut(s)	73, 115
Hin1II	CATG	1 cut(s)	533
Hin6I	GCGC	2 cut(s)	71, 113
HinP1I	GCGC	2 cut(s)	71, 113
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HindIII	AAGCTT	1 cut(s)	412
HinfI	GANTC	5 cut(s)	22, 121, 133, 253, 485
HpaII	CCGG	5 cut(s)	174, 192, 296, 462, 494
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	527
Hpy188I	TCNGA	5 cut(s)	107, 120, 128, 271, 472
Hpy188III	TCNNGA	3 cut(s)	34, 174, 494
Hpy8I	GTNNAC	1 cut(s)	527
HpyAV	CCTTC	2 cut(s)	21, 560
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	3 cut(s)	46, 355, 423
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 420
HpyF3I	CTNAG	1 cut(s)	410
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	533
HspAI	GCGC	2 cut(s)	71, 113
Kpn2I	TCCGGA	2 cut(s)	173, 493
Ksp22I	TGATCA	1 cut(s)	445
Kzo9I	GATC	3 cut(s)	81, 224, 445
LmnI	GCTCC	2 cut(s)	334, 496
LpnPI	CCDG	9 cut(s)	47, 187, 205, 309, 329, 443, 449, 475, 507
Lsp1109I	GCAGC	1 cut(s)	477
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	153
MalI	GATC	3 cut(s)	83, 226, 447
MboI	GATC	3 cut(s)	81, 224, 445
MboII	GAAGA	4 cut(s)	88, 212, 327, 353
MluCI	AATT	5 cut(s)	58, 161, 178, 183, 204
MlyI	GAGTC	1 cut(s)	494
MnlI	CCTC	8 cut(s)	11, 108, 122, 156, 198, 343, 360, 399
MroI	TCCGGA	2 cut(s)	173, 493
MroXI	GAANNNNTTC	1 cut(s)	311
MseI	TTAA	4 cut(s)	182, 324, 378, 552
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	5 cut(s)	174, 192, 296, 462, 494
MspR9I	CCNGG	2 cut(s)	192, 297
MwoI	GCNNNNNNNGC	2 cut(s)	406, 420
NciI	CCSGG	2 cut(s)	192, 297
NdeII	GATC	3 cut(s)	81, 224, 445
NlaIII	CATG	1 cut(s)	533
NlaIV	GGNNCC	3 cut(s)	32, 104, 300
NspI	RCATGY	1 cut(s)	533
NspV	TTCGAA	2 cut(s)	25, 56
PciI	ACATGT	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	311
PfeI	GAWTC	4 cut(s)	22, 121, 133, 253
PkrI	GCNGC	1 cut(s)	467
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	299
PscI	ACATGT	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	32, 104, 300
PspPI	GGNCC	1 cut(s)	299
PspPPI	RGGWCCY	1 cut(s)	299
PstNI	CAGNNNCTG	3 cut(s)	40, 352, 563
RsaI	GTAC	1 cut(s)	561
RsaNI	GTAC	1 cut(s)	560
RseI	CAYNNNNRTG	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	525
SaqAI	TTAA	4 cut(s)	182, 324, 378, 552
SatI	GCNGC	1 cut(s)	466
Sau3AI	GATC	3 cut(s)	81, 224, 445
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	2 cut(s)	192, 297
SfaNI	GCATC	1 cut(s)	33
SfuI	TTCGAA	2 cut(s)	25, 56
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	156
Sse9I	AATT	5 cut(s)	58, 161, 178, 183, 204
SsiI	CCGC	2 cut(s)	90, 230
StyD4I	CCNGG	2 cut(s)	190, 295
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	3 cut(s)	25, 56, 526
TasI	AATT	5 cut(s)	58, 161, 178, 183, 204
TfiI	GAWTC	4 cut(s)	22, 121, 133, 253
Tru1I	TTAA	4 cut(s)	182, 324, 378, 552
Tru9I	TTAA	4 cut(s)	182, 324, 378, 552
TseI	GCWGC	1 cut(s)	465
TspDTI	ATGAA	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	299
XapI	RAATTY	2 cut(s)	58, 178
XceI	RCATGY	1 cut(s)	533
XmiI	GTMKAC	1 cut(s)	526
XmnI	GAANNNNTTC	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.