Rw6G028560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010766
Physical Location & Seq
Forward (+)
52627205 .. 52628732
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028560.1

Sequence Viewer

Length: 783 bp
ATGGAGTTCACGGCCAACTCACTGGACGGCTCCGTCATCTTCCACGCCATTAACGAAATCTCAAGTTTCCTACTCTTCATGCACCAGCAAATCCCCGCAGTGTTGCAGGACATCACCGCGGAATTCGATTCCCGCTGCGACGAGTACAAGGCCTTGGAATCGGCTCTGAGAGAAGACCAGGTGAAGCCGGCGCTGCGGAGAAAGCACGCCGGCGAAATGAGGGAAGCCAAGCGAGGGATTCGAAGGTTCCAGAAGCTGATGCACGGCGTTTCGAATTTCCAAACGGCGCTGAAGACGGTCATCAGCGGAACTCCTCGGTTCCGAACAGCGCTTCTGATTCTCGGAGGGAATCCAATGCGACCTCAACACGTGTACGAATTGAGCTTCTCCGGAAATGTCAGCGGCGAAGAATTGGATTTTGCGAAAAGCAGAGCGGCGGAAGTGCTTTGTAGAAAAGCGATTCGGGGGTTGGTCTCGGAGAATGTTGGGTCTGTTTCGTATCCGGGTCCTTGGAAGCTGTTCCTGTTGGTTAAAGCTCCCTCTTCTTTCCATCAGCCTCTGCATTTTCTTCCCAAGCGAGATTTTAAATACAGCAACAAGATTGTGCCTATGAGGCTAAGCTTCAAATGCAAAAACCAGAACCAGAACATTGATCAGTTTTCGCAAACTGGCAGCTCTGATGGGTTGGTTCAGTCTGCTGCGGATGGGGATGATTTTATATGGTTTCAATGTCGACATGTAATCAAGGGAATAGCATTTAACACAGTACCTGAAGGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p31comet

Protein Analysis

260

Amino Acids

29.28

Weight (kDa)

9.17

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 434
AccI GTMKAC 1 cut(s) 733
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 389
AcoI YGGCCR 1 cut(s) 12
AcsI RAATTY 2 cut(s) 122, 274
AcuI CTGAAG 1 cut(s) 311
AcvI CACGTG 1 cut(s) 370
AfaI GTAC 3 cut(s) 146, 374, 768
AfeI AGCGCT 1 cut(s) 330
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 3 cut(s) 367, 369, 736
AgsI TTSAA 2 cut(s) 625, 728
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 6 cut(s) 256, 384, 517, 536, 621, 675
AluI AGCT 6 cut(s) 256, 384, 517, 536, 621, 675
Alw26I GTCTC 1 cut(s) 478
AlwNI CAGNNNCTG 3 cut(s) 256, 559, 770
Aor13HI TCCGGA 1 cut(s) 389
Aor51HI AGCGCT 1 cut(s) 330
AoxI GGCC 2 cut(s) 12, 150
ApeKI GCWGC 4 cut(s) 135, 193, 672, 698
ApoI RAATTY 2 cut(s) 122, 274
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 3 cut(s) 193, 289, 331
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 504
AsuHPI GGTGA 2 cut(s) 106, 193
AsuII TTCGAA 2 cut(s) 241, 272
AvaII GGWCC 1 cut(s) 506
BbrPI CACGTG 1 cut(s) 370
BbsI GAAGAC 2 cut(s) 180, 299
BbvI GCAGC 4 cut(s) 122, 180, 684, 685
BccI CCATC 3 cut(s) 558, 674, 698
BceAI ACGGC 4 cut(s) 27, 43, 280, 300
BciT130I CCWGG 1 cut(s) 179
BciVI GTATCC 1 cut(s) 510
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 1 cut(s) 504
BcoDI GTCTC 1 cut(s) 478
BfoI RGCGCY 3 cut(s) 194, 290, 332
BfuI GTATCC 1 cut(s) 510
BglI GCCNNNNNGGC 1 cut(s) 613
BisI GCNGC 6 cut(s) 136, 194, 403, 435, 673, 699
BlpI GCTNAGC 1 cut(s) 617
BlsI GCNGC 6 cut(s) 137, 195, 404, 436, 674, 700
Bme1390I CCNGG 2 cut(s) 179, 504
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 4 cut(s) 31, 248, 320, 507
BmrFI CCNGG 2 cut(s) 179, 504
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 180, 299
Bpu1102I GCTNAGC 1 cut(s) 617
Bpu14I TTCGAA 2 cut(s) 241, 272
BpuEI CTTGAG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 4 cut(s) 117, 153, 314, 509
BsaWI WCCGGW 1 cut(s) 389
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 2 cut(s) 187, 209
Bse1I ACTGG 2 cut(s) 27, 673
BseAI TCCGGA 1 cut(s) 389
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 4 cut(s) 117, 153, 314, 509
BseGI GGATG 2 cut(s) 709, 715
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 2 cut(s) 27, 673
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 4 cut(s) 122, 180, 684, 685
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 2 cut(s) 14, 152
BsiSI CCGG 4 cut(s) 188, 210, 390, 503
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 478
BsnI GGCC 2 cut(s) 14, 152
Bso31I GGTCTC 1 cut(s) 478
Bsp119I TTCGAA 2 cut(s) 241, 272
Bsp13I TCCGGA 1 cut(s) 389
Bsp143I GATC 1 cut(s) 652
Bsp1720I GCTNAGC 1 cut(s) 617
BspANI GGCC 2 cut(s) 14, 152
BspCNI CTCAG 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 389
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 4 cut(s) 31, 248, 320, 507
BspT104I TTCGAA 2 cut(s) 241, 272
BspTNI GGTCTC 1 cut(s) 478
BsrBI CCGCTC 1 cut(s) 434
BsrFI RCCGGY 2 cut(s) 187, 209
BsrI ACTGG 2 cut(s) 27, 673
BssAI RCCGGY 2 cut(s) 187, 209
BssECI CCNNGG 4 cut(s) 117, 153, 314, 509
BssMI GATC 1 cut(s) 652
BssT1I CCWWGG 2 cut(s) 153, 509
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 2 cut(s) 298, 766
Bst6I CTCTTC 2 cut(s) 80, 547
BstBAI YACGTR 1 cut(s) 370
BstBI TTCGAA 2 cut(s) 241, 272
BstC8I GCNNGC 3 cut(s) 189, 207, 211
BstDEI CTNAG 2 cut(s) 167, 617
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 2 cut(s) 709, 715
BstFNI CGCG 1 cut(s) 119
BstH2I RGCGCY 3 cut(s) 194, 290, 332
BstHHI GCGC 3 cut(s) 193, 289, 331
BstKTI GATC 1 cut(s) 655
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 1 cut(s) 652
BstMWI GCNNNNNNNGC 4 cut(s) 193, 202, 613, 627
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 177, 502
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 122, 180, 684, 685
BstV2I GAAGAC 2 cut(s) 180, 299
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuI GTATCC 1 cut(s) 510
BsuRI GGCC 2 cut(s) 14, 152
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 2 cut(s) 709, 715
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 20, 105
Cac8I GCNNGC 3 cut(s) 189, 207, 211
CaiI CAGNNNCTG 3 cut(s) 256, 559, 770
CfoI GCGC 3 cut(s) 193, 289, 331
Cfr10I RCCGGY 2 cut(s) 187, 209
Cfr13I GGNCC 1 cut(s) 506
Cfr42I CCGCGG 1 cut(s) 120
CsiI ACCWGGT 1 cut(s) 177
Csp6I GTAC 3 cut(s) 145, 373, 767
CviAII CATG 2 cut(s) 79, 737
CviQI GTAC 3 cut(s) 145, 373, 767
DdeI CTNAG 2 cut(s) 167, 617
DpnI GATC 1 cut(s) 654
DpnII GATC 1 cut(s) 652
DraI TTTAAA 1 cut(s) 586
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 80, 547
EarI CTCTTC 2 cut(s) 80, 547
EciI GGCGGA 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 153, 509
Eco147I AGGCCT 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 506
Eco47III AGCGCT 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 311
Eco72I CACGTG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 153, 509
ErhI CCWWGG 2 cut(s) 153, 509
FaeI CATG 2 cut(s) 82, 740
FaiI YATR 5 cut(s) 80, 611, 719, 721, 738
FatI CATG 2 cut(s) 78, 736
FauI CCCGC 2 cut(s) 103, 140
FbaI TGATCA 1 cut(s) 652
FblI GTMKAC 1 cut(s) 733
Fnu4HI GCNGC 6 cut(s) 136, 194, 403, 435, 673, 699
FokI GGATG 2 cut(s) 716, 722
Fsp4HI GCNGC 6 cut(s) 136, 194, 403, 435, 673, 699
GlaI GCGC 3 cut(s) 192, 288, 330
GluI GCNGC 6 cut(s) 136, 194, 403, 435, 673, 699
HaeII RGCGCY 3 cut(s) 194, 290, 332
HaeIII GGCC 2 cut(s) 14, 152
HapII CCGG 4 cut(s) 188, 210, 390, 503
HhaI GCGC 3 cut(s) 193, 289, 331
Hin1II CATG 2 cut(s) 82, 740
Hin6I GCGC 3 cut(s) 191, 287, 329
HinP1I GCGC 3 cut(s) 191, 287, 329
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HindIII AAGCTT 1 cut(s) 619
HinfI GANTC 6 cut(s) 128, 158, 238, 337, 349, 460
HpaII CCGG 4 cut(s) 188, 210, 390, 503
HphI GGTGA 2 cut(s) 106, 193
Hpy166II GTNNAC 3 cut(s) 9, 373, 734
Hpy188I TCNGA 6 cut(s) 168, 323, 336, 344, 478, 679
Hpy188III TCNNGA 2 cut(s) 250, 390
Hpy8I GTNNAC 3 cut(s) 9, 373, 734
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 237, 767
HpyCH4III ACNGT 2 cut(s) 298, 766
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 5 cut(s) 82, 106, 262, 562, 630
HpyF10VI GCNNNNNNNGC 4 cut(s) 193, 202, 613, 627
HpyF3I CTNAG 2 cut(s) 167, 617
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 2 cut(s) 82, 740
HspAI GCGC 3 cut(s) 191, 287, 329
Kpn2I TCCGGA 1 cut(s) 389
KroI GCCGGC 2 cut(s) 187, 209
KroNI GCCGGC 2 cut(s) 189, 211
Ksp22I TGATCA 1 cut(s) 652
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 1 cut(s) 652
LmnI GCTCC 2 cut(s) 35, 541
Lsp1109I GCAGC 4 cut(s) 122, 180, 684, 685
LweI GCATC 1 cut(s) 249
MabI ACCWGGT 1 cut(s) 177
MaeII ACGT 1 cut(s) 369
MalI GATC 1 cut(s) 654
MbiI CCGCTC 1 cut(s) 434
MboI GATC 1 cut(s) 652
MboII GAAGA 7 cut(s) 31, 67, 185, 304, 419, 534, 560
MluCI AATT 4 cut(s) 122, 274, 377, 410
MnlI CCTC 8 cut(s) 213, 227, 324, 338, 372, 550, 567, 606
MreI CGCCGGCG 1 cut(s) 209
MroI TCCGGA 1 cut(s) 389
MroNI GCCGGC 2 cut(s) 187, 209
MroXI GAANNNNTTC 1 cut(s) 518
MseI TTAA 4 cut(s) 51, 531, 585, 759
MspA1I CMGCKG 4 cut(s) 119, 135, 306, 402
MspI CCGG 4 cut(s) 188, 210, 390, 503
MspR9I CCNGG 2 cut(s) 179, 504
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 4 cut(s) 193, 202, 613, 627
NaeI GCCGGC 2 cut(s) 189, 211
NciI CCSGG 1 cut(s) 504
NdeII GATC 1 cut(s) 652
NgoMIV GCCGGC 2 cut(s) 187, 209
NlaIII CATG 2 cut(s) 82, 740
NlaIV GGNNCC 4 cut(s) 31, 248, 320, 507
NspI RCATGY 1 cut(s) 740
NspV TTCGAA 2 cut(s) 241, 272
PceI AGGCCT 1 cut(s) 152
PciI ACATGT 1 cut(s) 736
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdiI GCCGGC 2 cut(s) 189, 211
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 6 cut(s) 128, 158, 238, 337, 349, 460
PkrI GCNGC 6 cut(s) 137, 195, 404, 436, 674, 700
PmaCI CACGTG 1 cut(s) 370
PmlI CACGTG 1 cut(s) 370
Ppu21I YACGTR 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 506
PscI ACATGT 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 177
PspCI CACGTG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 4 cut(s) 31, 248, 320, 507
PspPI GGNCC 1 cut(s) 506
PspPPI RGGWCCY 1 cut(s) 506
PstNI CAGNNNCTG 3 cut(s) 256, 559, 770
RsaI GTAC 3 cut(s) 146, 374, 768
RsaNI GTAC 3 cut(s) 145, 373, 767
SacII CCGCGG 1 cut(s) 120
SalI GTCGAC 1 cut(s) 732
SaqAI TTAA 4 cut(s) 51, 531, 585, 759
SatI GCNGC 6 cut(s) 136, 194, 403, 435, 673, 699
Sau3AI GATC 1 cut(s) 652
Sau96I GGNCC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 179, 504
SexAI ACCWGGT 1 cut(s) 177
SfaNI GCATC 1 cut(s) 249
Sfr303I CCGCGG 1 cut(s) 120
SfuI TTCGAA 2 cut(s) 241, 272
SgrAI CRCCGGYG 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 4 cut(s) 122, 274, 377, 410
SseBI AGGCCT 1 cut(s) 152
StuI AGGCCT 1 cut(s) 152
StyD4I CCNGG 2 cut(s) 177, 502
StyI CCWWGG 2 cut(s) 153, 509
TaaI ACNGT 2 cut(s) 298, 766
TaiI ACGT 1 cut(s) 372
TaqI TCGA 4 cut(s) 126, 241, 272, 733
TasI AATT 4 cut(s) 122, 274, 377, 410
TatI WGTACW 1 cut(s) 144
TauI GCSGC 2 cut(s) 405, 437
TfiI GAWTC 6 cut(s) 128, 158, 238, 337, 349, 460
Tru1I TTAA 4 cut(s) 51, 531, 585, 759
Tru9I TTAA 4 cut(s) 51, 531, 585, 759
TscAI CASTG 2 cut(s) 27, 105
TseI GCWGC 4 cut(s) 135, 193, 672, 698
TspDTI ATGAA 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 2 cut(s) 27, 105
VpaK11BI GGWCC 1 cut(s) 506
XapI RAATTY 2 cut(s) 122, 274
XceI RCATGY 1 cut(s) 740
XmiI GTMKAC 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.