Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007004

Physical Location & Seq

Genomic Coordinates Forward (+)

847793 .. 849621

Gene Structure 1829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGAACACCATCGTCGTTGCTCAGTTGCAGAGACAATTTCAAGACTACATCGTTTCTCTTTATCAACAGGGATTTCTGGATAATCAGTTCTCAGAGTTGAGAAAGTTGCAAGATGAAGGAACCCCTGATTTTGTAGCTGAAGTTGTCTCTCTATTCTTCGACGACTGTTCCAAGCTTATTAATACCATGTCTATATCCCTGGAGCGGCCAGATAATGTGGATTTCAAACAGGTGGATTCAGGTGTTCATCAACTCAAGGGTAGTAGCTCCAGTGTCGGTGCAAGGAGGGTGAAAAATGTGTGCATATCTTTCAAGGAATGTTGCGATGTTCAGAACCGTGAAGGGTGTCTAAGGTGTTTACAGCAGGTGGATTATGAATATAAGATGTTAAAGACTAAACTTCAGGATCTCTTTAATTTAGAGAAACAGATCCTCCAAGCTGGAGGTACAATTCCTCAAGTGGATATAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009553 GO:0009557 GO:0009560 GO:0009561 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

157

Amino Acids

17.93

Weight (kDa)

5.0

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	47 - 130	1.8e-13	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03430 AT1G03430 AT3G29350 AT3G29350 AT4G04402 AT5G39340 AT5G39340 AT5G39340 AT5G39340
fragaria_vesca	FvH4_2g24320
malus_domestica	MD03G1272900.v1.1 MD11G1293900.v1.1
prunus_persica	Prupe.8G249400_v2.0.a1 Prupe.8G249400_v2.0.a1
pyrus_communis	pycom03g21740 pycom11g26000
rosa_chinensis	RchiOBHm_Chr6g0292191
rosa_laevigata	RLG00000012054
rosa_multiflora	Rmu_co8470707.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175370
rosa_rugosa	Rorug06G0224400
rosa_samantha	Rh6BG344700 Rh6CG351800 Rh6DG337700
rosa_wichuraiana	Rw6G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
Acc36I	ACCTGC	1 cut(s)	355
AccBSI	CCGCTC	1 cut(s)	205
AciI	CCGC	1 cut(s)	205
AclWI	GGATC	2 cut(s)	414, 424
AcoI	YGGCCR	1 cut(s)	206
AcuI	CTGAAG	2 cut(s)	159, 386
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	41, 226, 313
AjnI	CCWGG	1 cut(s)	198
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	137, 175, 267, 440
AluI	AGCT	4 cut(s)	137, 175, 267, 440
Alw26I	GTCTC	2 cut(s)	25, 151
AlwI	GGATC	2 cut(s)	414, 424
AoxI	GGCC	1 cut(s)	206
AseI	ATTAAT	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	301
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	25, 151
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	206
BlsI	GCNGC	1 cut(s)	207
Bme1390I	CCNGG	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	200
BpmI	CTGGAG	3 cut(s)	221, 253, 462
BpuEI	CTTGAG	2 cut(s)	239, 441
BsaJI	CCNNGG	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	2 cut(s)	35, 105
BseNI	ACTGG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	25, 151
BsnI	GGCC	1 cut(s)	208
Bsp143I	GATC	2 cut(s)	406, 429
BspACI	CCGC	1 cut(s)	205
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	2 cut(s)	34, 104
BspLI	GGNNCC	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	355
BspPI	GGATC	2 cut(s)	414, 424
BsrBI	CCGCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	2 cut(s)	406, 429
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	167, 338
BstDEI	CTNAG	3 cut(s)	21, 91, 350
BstKTI	GATC	2 cut(s)	409, 432
BstMAI	GTCTC	2 cut(s)	25, 151
BstMBI	GATC	2 cut(s)	406, 429
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	406, 429
BstYI	RGATCY	2 cut(s)	406, 429
BsuRI	GGCC	1 cut(s)	208
BtgZI	GCGATG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	355
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	5 cut(s)	137, 175, 208, 267, 440
CviKI_1	RGCY	5 cut(s)	137, 175, 208, 267, 440
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	3 cut(s)	21, 91, 350
DpnI	GATC	2 cut(s)	408, 431
DpnII	GATC	2 cut(s)	406, 429
EaeI	YGGCCR	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	159, 386
EcoRII	CCWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	190
FaiI	YATR	6 cut(s)	188, 194, 305, 375, 381, 467
FatI	CATG	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	206
GsuI	CTGGAG	3 cut(s)	221, 253, 462
HaeIII	GGCC	1 cut(s)	208
Hin1II	CATG	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	236
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	94, 333
Hpy188III	TCNNGA	3 cut(s)	41, 77, 404
Hpy8I	GTNNAC	1 cut(s)	359
Hpy99I	CGWCG	2 cut(s)	17, 164
HpyAV	CCTTC	2 cut(s)	110, 335
HpyCH4III	ACNGT	2 cut(s)	167, 338
HpyCH4V	TGCA	4 cut(s)	28, 109, 281, 303
HpyF3I	CTNAG	3 cut(s)	21, 91, 350
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	406, 429
LmnI	GCTCC	2 cut(s)	202, 272
MalI	GATC	2 cut(s)	408, 431
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	2 cut(s)	406, 429
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	2 cut(s)	406, 429
MluCI	AATT	4 cut(s)	35, 415, 450, 469
MnlI	CCTC	4 cut(s)	279, 437, 443, 465
MseI	TTAA	3 cut(s)	180, 389, 414
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	406, 429
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	121
PaqCI	CACCTGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	207
PshBI	ATTAAT	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	121
PsuI	RGATCY	2 cut(s)	406, 429
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	180, 389, 414
SatI	GCNGC	1 cut(s)	206
Sau3AI	GATC	2 cut(s)	406, 429
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	9 cut(s)	139, 177, 234, 244, 269, 356, 369, 442, 448
SmlI	CTYRAG	2 cut(s)	254, 456
SmoI	CTYRAG	2 cut(s)	254, 456
Sse9I	AATT	4 cut(s)	35, 415, 450, 469
SsiI	CCGC	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	167, 338
TaqI	TCGA	1 cut(s)	159
TasI	AATT	4 cut(s)	35, 415, 450, 469
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	3 cut(s)	180, 389, 414
Tru9I	TTAA	3 cut(s)	180, 389, 414
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	4 cut(s)	17, 129, 236, 390
TspRI	CASTG	1 cut(s)	277
VspI	ATTAAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.