Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007004

Physical Location & Seq

Genomic Coordinates Forward (+)

2164007 .. 2165404

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04402.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGGTTTTGGGTCGTTGGGCATGGATCTTAATTGGATCGGATACTTTGTTGGGTCGTCTGGGTTTTTGGGGTTTTTGGATGATCAGTTTACTGAATTGAAGAAGCTTCAAGATGATGGAAGTCCTGATTTTGTAGCTGAGGTTCTGTCTCTTTTCTTTGAAGATTGTGTTAAGCTTATCAGTAACATGGCTCGAGCTTTGGATAAGTCGACGGGAACTGTAGATTTTGGTCAGATGAAGCTCTTCTCTTGTACTCTTGTTTTCGATACAGTGTTGGTGCGAAGAGGGTCAAAGCTTTGTGTGTTAGCTTCAAGGAATATTGCGAAGCTCAGAATTACGAAGGGTAAGCTTGTTCAACACCGCTTAAGGACTCATCGGTTGAGATGTTTGCAGCAAGTGGATATTGAGTATAAGACCTTGACGACAAAGCTTCAAGATATGTTCAATCTTGAGAAACAAATCATTCAAGCTGGTGGTAGAGTTCCTCAAGTGGATATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009553 GO:0009557 GO:0009560 GO:0009561 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

167

Amino Acids

18.83

Weight (kDa)

8.94

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03430 AT1G03430 AT3G29350 AT3G29350 AT4G04402 AT5G39340 AT5G39340 AT5G39340 AT5G39340
fragaria_vesca	FvH4_2g24320
malus_domestica	MD03G1272900.v1.1 MD11G1293900.v1.1
prunus_persica	Prupe.8G249400_v2.0.a1 Prupe.8G249400_v2.0.a1
pyrus_communis	pycom03g21740 pycom11g26000
rosa_chinensis	RchiOBHm_Chr6g0292191
rosa_laevigata	RLG00000012054
rosa_multiflora	Rmu_co8470707.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175370
rosa_rugosa	Rorug06G0224400
rosa_samantha	Rh6BG344700 Rh6CG351800 Rh6DG337700
rosa_wichuraiana	Rw6G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	209
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	2 cut(s)	33, 44
AfaI	GTAC	1 cut(s)	253
AflII	CTTAAG	1 cut(s)	364
AgsI	TTSAA	8 cut(s)	100, 110, 161, 312, 356, 434, 445, 467
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	33, 44
Ama87I	CYCGRG	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	391
Asp700I	GAANNNNTTC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	1 cut(s)	110
BciVI	GTATCC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	219
BfrI	CTTAAG	1 cut(s)	364
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
BmeT110I	CYCGRG	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	470, 471
BseGI	GGATG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	129, 343
BseXI	GCAGC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	192
Bsp143I	GATC	3 cut(s)	25, 36, 82
BspACI	CCGC	1 cut(s)	361
BspCNI	CTCAG	2 cut(s)	130, 342
BspPI	GGATC	2 cut(s)	33, 44
BspQI	GCTCTTC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	364
BssMI	GATC	3 cut(s)	25, 36, 82
Bst4CI	ACNGT	2 cut(s)	220, 271
Bst6I	CTCTTC	2 cut(s)	248, 277
BstAFI	CTTAAG	1 cut(s)	364
BstDEI	CTNAG	2 cut(s)	138, 329
BstF5I	GGATG	1 cut(s)	85
BstKTI	GATC	3 cut(s)	28, 39, 85
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	3 cut(s)	25, 36, 82
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	276
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	2 cut(s)	22, 187
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	138, 329
DpnI	GATC	3 cut(s)	27, 38, 84
DpnII	GATC	3 cut(s)	25, 36, 82
Eam1104I	CTCTTC	2 cut(s)	248, 277
EarI	CTCTTC	2 cut(s)	248, 277
Eco88I	CYCGRG	1 cut(s)	192
FaeI	CATG	2 cut(s)	25, 190
FaiI	YATR	4 cut(s)	23, 188, 411, 440
FatI	CATG	2 cut(s)	21, 186
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	392
GluI	GCNGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	25, 190
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	5 cut(s)	104, 173, 293, 347, 428
HinfI	GANTC	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	90, 210
Hpy188I	TCNGA	3 cut(s)	41, 234, 332
Hpy188III	TCNNGA	4 cut(s)	110, 125, 434, 449
Hpy8I	GTNNAC	2 cut(s)	90, 210
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	2 cut(s)	220, 271
HpyCH4V	TGCA	1 cut(s)	391
HpyF3I	CTNAG	2 cut(s)	138, 329
Hsp92II	CATG	2 cut(s)	25, 190
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	3 cut(s)	25, 36, 82
LguI	GCTCTTC	1 cut(s)	248
LpnPI	CCDG	3 cut(s)	45, 138, 456
Lsp1109I	GCAGC	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	27, 38, 84
MboI	GATC	3 cut(s)	25, 36, 82
MboII	GAAGA	4 cut(s)	112, 173, 235, 294
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	3 cut(s)	31, 95, 333
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	133, 278, 495
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	4 cut(s)	30, 171, 365, 498
MspCI	CTTAAG	1 cut(s)	364
NdeII	GATC	3 cut(s)	25, 36, 82
NlaIII	CATG	2 cut(s)	25, 190
PaeR7I	CTCGAG	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	242
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspXI	VCTCGAGB	1 cut(s)	192
PsrI	GAACNNNNNNTAC	2 cut(s)	126, 158
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	248
SaqAI	TTAA	4 cut(s)	30, 171, 365, 498
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	3 cut(s)	25, 36, 82
SchI	GAGTC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	4 cut(s)	192, 364, 449, 486
SmoI	CTYRAG	4 cut(s)	192, 364, 449, 486
Sse9I	AATT	3 cut(s)	31, 95, 333
SsiI	CCGC	1 cut(s)	361
SspI	AATATT	1 cut(s)	319
TaaI	ACNGT	2 cut(s)	220, 271
TaqI	TCGA	3 cut(s)	193, 209, 264
TasI	AATT	3 cut(s)	31, 95, 333
TatI	WGTACW	1 cut(s)	251
Tru1I	TTAA	4 cut(s)	30, 171, 365, 498
Tru9I	TTAA	4 cut(s)	30, 171, 365, 498
TscAI	CASTG	1 cut(s)	276
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	276
Vha464I	CTTAAG	1 cut(s)	364
XhoI	CTCGAG	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.