FvH4_2g24320

phosphotransfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007004
Physical Location & Seq
Forward (+)
19875513 .. 19876469
957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24320.t1

Sequence Viewer

Length: 339 bp
ATGGATACCGTGGCTCAGTTGCGAAGCCAGTGGTTTGACTACACCCATTATCTGCGACGAGAGAGATTCTTGGATGATCAGTTTGCACAGCTGAAGAAGCTTCAGGATGCAAGCAGCCCGGACTTTGTGTTTGAGGTTGTTTCTCTGTTCTTTCAAAATTCTGAGAAGGTTATTAACATTATGGCCGAGGCTCTAGAGCAGAATGTTGTAGACTTCAATCAAGTAGTTATCTATGTCCATCGATTGAAGGGTAGCAGTGCCTGGATAGGTGCAACGAGAGTTAAAAATGCATGCATCGACTTCAGAAATTATTGTGAGGCGAAGGACATTGAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

113

Amino Acids

13.12

Weight (kDa)

5.3

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hpt PF01627 45 - 109 1.7e-11 Hpt domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 3 cut(s) 86, 113, 286
AgsI TTSAA 3 cut(s) 155, 217, 247
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 2 cut(s) 91, 100
AluI AGCT 2 cut(s) 91, 100
AlwNI CAGNNNCTG 1 cut(s) 261
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 157
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AsuC2I CCSGG 1 cut(s) 119
BbvI GCAGC 1 cut(s) 126
BccI CCATC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 262
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 194
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 2 cut(s) 119, 262
BmrFI CCNGG 2 cut(s) 119, 262
BmsI GCATC 2 cut(s) 97, 303
BpuMI CCSGG 1 cut(s) 119
Bsa29I ATCGAT 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 9, 186
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 241
BseDI CCNNGG 2 cut(s) 9, 186
BseGI GGATG 2 cut(s) 79, 112
BseMII CTCAG 2 cut(s) 29, 153
BseNI ACTGG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 126
BshFI GGCC 1 cut(s) 185
BshVI ATCGAT 1 cut(s) 241
BsiSI CCGG 1 cut(s) 119
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 76
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 28, 154
BspDI ATCGAT 1 cut(s) 241
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 9, 186
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 112, 292
BstDEI CTNAG 2 cut(s) 15, 162
BstDSI CCRYGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 79, 112
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 117, 260
BstV1I GCAGC 1 cut(s) 126
Bsu15I ATCGAT 1 cut(s) 241
BsuRI GGCC 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 241
BtgI CCRYGG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 79, 112
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 2 cut(s) 35, 262
Cac8I GCNNGC 2 cut(s) 112, 292
CaiI CAGNNNCTG 1 cut(s) 261
ClaI ATCGAT 1 cut(s) 241
CviAII CATG 1 cut(s) 291
CviJI RGCY 7 cut(s) 14, 27, 91, 100, 117, 185, 191
CviKI_1 RGCY 7 cut(s) 14, 27, 91, 100, 117, 185, 191
DdeI CTNAG 2 cut(s) 15, 162
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 183
Eco57I CTGAAG 3 cut(s) 86, 113, 286
EcoRII CCWGG 1 cut(s) 260
EcoT22I ATGCAT 2 cut(s) 292, 296
FaeI CATG 1 cut(s) 294
FaiI YATR 3 cut(s) 182, 234, 292
FatI CATG 1 cut(s) 290
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 2 cut(s) 86, 119
Fsp4HI GCNGC 1 cut(s) 115
FspBI CTAG 1 cut(s) 194
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 185
HapII CCGG 1 cut(s) 119
Hin1II CATG 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 1 cut(s) 66
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 163, 305
Hpy188III TCNNGA 2 cut(s) 104, 194
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 3 cut(s) 160, 241, 316
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 86, 110, 272, 290, 294
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 15, 162
Hsp92II CATG 1 cut(s) 294
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 5 cut(s) 41, 89, 132, 247, 274
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 2 cut(s) 97, 303
MaeI CTAG 1 cut(s) 194
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 106
MluCI AATT 2 cut(s) 157, 307
MnlI CCTC 4 cut(s) 127, 181, 310, 325
Mph1103I ATGCAT 2 cut(s) 292, 296
MseI TTAA 2 cut(s) 174, 282
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 119, 262
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 119
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 294
NmeAIII GCCGAG 1 cut(s) 211
NsiI ATGCAT 2 cut(s) 292, 296
NspI RCATGY 1 cut(s) 294
PaeI GCATGC 1 cut(s) 294
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 260
PspGI CCWGG 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 261
PvuII CAGCTG 1 cut(s) 91
SaqAI TTAA 2 cut(s) 174, 282
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 119, 262
SetI ASST 5 cut(s) 93, 102, 138, 171, 271
SfaNI GCATC 2 cut(s) 97, 303
SphI GCATGC 1 cut(s) 294
Sse9I AATT 2 cut(s) 157, 307
SspMI CTAG 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 117, 260
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 241, 297
TasI AATT 2 cut(s) 157, 307
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 2 cut(s) 174, 282
Tru9I TTAA 2 cut(s) 174, 282
TscAI CASTG 2 cut(s) 35, 262
TseI GCWGC 1 cut(s) 114
TspRI CASTG 2 cut(s) 35, 262
XapI RAATTY 1 cut(s) 157
XbaI TCTAGA 1 cut(s) 193
XceI RCATGY 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 210
XspI CTAG 1 cut(s) 194
Zsp2I ATGCAT 2 cut(s) 292, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.