Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007004

Physical Location & Seq

Genomic Coordinates Forward (+)

15748731 .. 15750891

Gene Structure 2161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACACACTCATTGCTCAGTTACAGAGACGATTTTGTGATTTCACCATTAGTCTCTATCACCAGGGGTTTTTGGATGATCAATTCACAGAATTGAAAAAGCTGCAAGATGAATGTAGTCCTGATTTTGTGGCTGAGGTTGTTACTCTCTTCTTTGAAGACTGTGAGAAGCTTATCAGTAATATGGCTAGAGCTTTAGATCAGACAGGAAATGTAGATTTCAAACTGGTAGGTTCTAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGGTGCCAAGAGAGTCAAAGGTCTTTGTGTTACCCTCAAGGAGTGTTGCGACTCTCAGAACTATGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACATTAAAAGCAAAGCTTCAAGATCTGTTCAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCAAGTGGATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009553 GO:0009557 GO:0009560 GO:0009561 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

155

Amino Acids

17.48

Weight (kDa)

5.02

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	95 - 180	3.3e-15	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Orthologous Genes (Group: OG0007004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03430 AT1G03430 AT3G29350 AT3G29350 AT4G04402 AT5G39340 AT5G39340 AT5G39340 AT5G39340
fragaria_vesca	FvH4_2g24320
malus_domestica	MD03G1272900.v1.1 MD11G1293900.v1.1
prunus_persica	Prupe.8G249400_v2.0.a1 Prupe.8G249400_v2.0.a1
pyrus_communis	pycom03g21740 pycom11g26000
rosa_chinensis	RchiOBHm_Chr6g0292191
rosa_laevigata	RLG00000012054
rosa_multiflora	Rmu_co8470707.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175370
rosa_rugosa	Rorug06G0224400
rosa_samantha	Rh6BG344700 Rh6CG351800 Rh6DG337700
rosa_wichuraiana	Rw6G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	97, 158, 223, 401, 412
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	6 cut(s)	103, 172, 194, 264, 397, 437
AluI	AGCT	6 cut(s)	103, 172, 194, 264, 397, 437
Alw26I	GTCTC	2 cut(s)	22, 59
ApeKI	GCWGC	2 cut(s)	103, 358
AsuHPI	GGTGA	2 cut(s)	37, 53
BanI	GGYRCC	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	165
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	90, 370
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	22, 59
BfaI	CTAG	2 cut(s)	189, 237
BglII	AGATCT	1 cut(s)	403
BisI	GCNGC	2 cut(s)	104, 359
BlsI	GCNGC	2 cut(s)	105, 360
Bme1390I	CCNGG	1 cut(s)	65
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	4 cut(s)	250, 293, 437, 438
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	3 cut(s)	32, 126, 341
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	90, 370
BshNI	GGYRCC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	2 cut(s)	22, 59
BsmBI	CGTCTC	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	79, 199, 403
BspCNI	CTCAG	3 cut(s)	31, 127, 340
BspLI	GGNNCC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	79, 199, 403
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	3 cut(s)	18, 135, 327
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	3 cut(s)	82, 202, 406
BstMAI	GTCTC	2 cut(s)	22, 59
BstMBI	GATC	3 cut(s)	79, 199, 403
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	90, 370
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	376
CviJI	RGCY	8 cut(s)	103, 134, 172, 188, 194, 264, 397, 437
CviKI_1	RGCY	8 cut(s)	103, 134, 172, 188, 194, 264, 397, 437
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	18, 135, 327
DpnI	GATC	3 cut(s)	81, 201, 405
DpnII	GATC	3 cut(s)	79, 199, 403
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	22
FaiI	YATR	4 cut(s)	185, 336, 464, 466
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	104, 359
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	104, 359
FspBI	CTAG	2 cut(s)	189, 237
GluI	GCNGC	2 cut(s)	104, 359
HindIII	AAGCTT	2 cut(s)	170, 395
HinfI	GANTC	3 cut(s)	285, 323, 447
HphI	GGTGA	2 cut(s)	37, 53
Hpy188I	TCNGA	2 cut(s)	204, 330
Hpy188III	TCNNGA	3 cut(s)	122, 401, 416
HpyAV	CCTTC	1 cut(s)	332
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	2 cut(s)	106, 358
HpyF3I	CTNAG	3 cut(s)	18, 135, 327
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	79, 199, 403
LpnPI	CCDG	6 cut(s)	50, 77, 135, 192, 212, 423
Lsp1109I	GCAGC	2 cut(s)	90, 370
MaeI	CTAG	2 cut(s)	189, 237
MaeIII	GTNAC	3 cut(s)	21, 142, 301
MalI	GATC	3 cut(s)	81, 201, 405
MboI	GATC	3 cut(s)	79, 199, 403
MboII	GAAGA	2 cut(s)	142, 170
MflI	RGATCY	1 cut(s)	403
MluCI	AATT	2 cut(s)	83, 92
MlyI	GAGTC	2 cut(s)	294, 317
MnlI	CCTC	3 cut(s)	130, 317, 462
MseI	TTAA	1 cut(s)	386
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
NdeII	GATC	3 cut(s)	79, 199, 403
NlaIV	GGNNCC	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	447
PkrI	GCNGC	2 cut(s)	105, 360
PleI	GAGTC	2 cut(s)	293, 317
PpsI	GAGTC	2 cut(s)	293, 317
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	277
PsuI	RGATCY	1 cut(s)	403
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	2 cut(s)	104, 359
Sau3AI	GATC	3 cut(s)	79, 199, 403
SchI	GAGTC	2 cut(s)	294, 317
ScrFI	CCNGG	1 cut(s)	65
SmlI	CTYRAG	4 cut(s)	265, 308, 416, 453
SmoI	CTYRAG	4 cut(s)	265, 308, 416, 453
Sse9I	AATT	2 cut(s)	83, 92
SspMI	CTAG	2 cut(s)	189, 237
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	164
TasI	AATT	2 cut(s)	83, 92
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	447
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TseI	GCWGC	2 cut(s)	103, 358
TspDTI	ATGAA	3 cut(s)	126, 233, 351
XspI	CTAG	2 cut(s)	189, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.