Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007004

Physical Location & Seq

Genomic Coordinates Forward (+)

21985752 .. 21987665

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGACGCCGTGGCTCAGTGGCGGAATCAGTGGTTCGACTACACTCAGTATATGCGCCGAGAGGGATTCTTGGACGATCAGTTTGCACAACTAAAGAAGCTGCAGGATGAAAACAGCCCGGATTTTGTAGTTGAAGTTGTTTCTCTTTTCTTTCAAGATTCCGAGAAGCTTTTCAACAATATGGCCAGGGCTCTAGAACAGAACGTTGTAAATTTCAAACAGGTAGATGCCTATGTCCATCAATTCAAGGGTAGCAGTGCCTGGATAGGTGCATTCAGACTTAAAAATGTATGCATCAACTTCAGAAATTTTTGTGAGGCTCAGAACCTGGAAGGGTGTTTGAGATGTTTGCAGCAACTGCAGCAAGAGAGCTCTGCACTGAAGAACAAGCTTGAAAATTTATTTAGGTTGGAGCAACAAATCGTGGCTGCTGGCGGGTCAATTCCGATGATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

153

Amino Acids

17.78

Weight (kDa)

5.26

Isoelectric Point (pI)

36.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03430 AT1G03430 AT3G29350 AT3G29350 AT4G04402 AT5G39340 AT5G39340 AT5G39340 AT5G39340
fragaria_vesca	FvH4_2g24320
malus_domestica	MD03G1272900.v1.1 MD11G1293900.v1.1
prunus_persica	Prupe.8G249400_v2.0.a1 Prupe.8G249400_v2.0.a1
pyrus_communis	pycom03g21740 pycom11g26000
rosa_chinensis	RchiOBHm_Chr6g0292191
rosa_laevigata	RLG00000012054
rosa_multiflora	Rmu_co8470707.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175370
rosa_rugosa	Rorug06G0224400
rosa_samantha	Rh6BG344700 Rh6CG351800 Rh6DG337700
rosa_wichuraiana	Rw6G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	22, 435
AclI	AACGTT	1 cut(s)	204
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	3 cut(s)	211, 307, 397
AcuI	CTGAAG	2 cut(s)	286, 401
AcyI	GRCGYC	1 cut(s)	6
AgsI	TTSAA	6 cut(s)	134, 155, 175, 217, 247, 395
AjnI	CCWGG	3 cut(s)	185, 260, 327
AluBI	AGCT	4 cut(s)	100, 169, 372, 391
AluI	AGCT	4 cut(s)	100, 169, 372, 391
Alw21I	GWGCWC	1 cut(s)	374
AlwNI	CAGNNNCTG	3 cut(s)	261, 328, 358
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	4 cut(s)	100, 352, 361, 428
ApoI	RAATTY	3 cut(s)	211, 307, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	57
AsuC2I	CCSGG	1 cut(s)	119
BalI	TGGCCA	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	193, 374
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	4 cut(s)	87, 364, 373, 415
BccI	CCATC	2 cut(s)	246, 445
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	3 cut(s)	187, 262, 329
BcnI	CCSGG	1 cut(s)	119
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	2 cut(s)	101, 359
BisI	GCNGC	4 cut(s)	101, 353, 362, 429
BlsI	GCNGC	4 cut(s)	102, 354, 363, 430
Bme1390I	CCNGG	4 cut(s)	119, 187, 262, 329
BmrFI	CCNGG	4 cut(s)	119, 187, 262, 329
BmsI	GCATC	2 cut(s)	217, 303
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	6
BsaJI	CCNNGG	2 cut(s)	9, 186
BseBI	CCWGG	3 cut(s)	187, 262, 329
BseDI	CCNNGG	2 cut(s)	9, 186
BseGI	GGATG	1 cut(s)	112
BseMII	CTCAG	3 cut(s)	29, 59, 335
BseXI	GCAGC	4 cut(s)	87, 364, 373, 415
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	193, 374
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	2 cut(s)	22, 435
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	3 cut(s)	28, 58, 334
BspMAI	CTGCAG	2 cut(s)	105, 363
BssECI	CCNNGG	2 cut(s)	9, 186
BssMI	GATC	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	6
Bst2UI	CCWGG	3 cut(s)	187, 262, 329
BstACI	GRCGYC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	15, 45, 321
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	112
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 361
BstNI	CCWGG	3 cut(s)	187, 262, 329
BstSCI	CCNGG	4 cut(s)	117, 185, 260, 327
BstSFI	CTRYAG	2 cut(s)	101, 359
BstV1I	GCAGC	4 cut(s)	87, 364, 373, 415
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	4 cut(s)	23, 35, 262, 377
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	3 cut(s)	261, 328, 358
CfoI	GCGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	14
DdeI	CTNAG	3 cut(s)	15, 45, 321
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	183
EciI	GGCGGA	1 cut(s)	37
Ecl136II	GAGCTC	1 cut(s)	372
Eco24I	GRGCYC	2 cut(s)	193, 374
Eco53kI	GAGCTC	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	286, 401
EcoICRI	GAGCTC	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	185, 260, 327
EcoT22I	ATGCAT	1 cut(s)	296
EcoT38I	GRGCYC	2 cut(s)	193, 374
FaiI	YATR	5 cut(s)	51, 53, 182, 234, 292
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	4 cut(s)	101, 353, 362, 429
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	2 cut(s)	193, 374
Fsp4HI	GCNGC	4 cut(s)	101, 353, 362, 429
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	4 cut(s)	101, 353, 362, 429
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HindIII	AAGCTT	2 cut(s)	167, 389
HinfI	GANTC	3 cut(s)	25, 66, 158
HpaII	CCGG	1 cut(s)	119
Hpy188I	TCNGA	5 cut(s)	163, 278, 305, 324, 447
Hpy188III	TCNNGA	2 cut(s)	155, 194
HpyAV	CCTTC	1 cut(s)	326
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	7 cut(s)	86, 103, 272, 294, 352, 361, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 361
HpyF3I	CTNAG	3 cut(s)	15, 45, 321
HpySE526I	ACGT	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	6
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	4 cut(s)	87, 364, 373, 415
LweI	GCATC	2 cut(s)	217, 303
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	204
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	394
MhlI	GDGCHC	2 cut(s)	193, 374
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	5 cut(s)	211, 242, 307, 397, 441
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	2 cut(s)	55, 310
Mox20I	TGGCCA	1 cut(s)	185
Mph1103I	ATGCAT	1 cut(s)	296
MroXI	GAANNNNTTC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	282
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	4 cut(s)	119, 187, 262, 329
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	3 cut(s)	187, 262, 329
MwoI	GCNNNNNNNGC	2 cut(s)	358, 361
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	1 cut(s)	76
NmeAIII	GCCGAG	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	296
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	25, 66, 158
PkrI	GCNGC	4 cut(s)	102, 354, 363, 430
Psp124BI	GAGCTC	1 cut(s)	374
Psp1406I	AACGTT	1 cut(s)	204
Psp6I	CCWGG	3 cut(s)	185, 260, 327
PspGI	CCWGG	3 cut(s)	185, 260, 327
PstI	CTGCAG	2 cut(s)	105, 363
PstNI	CAGNNNCTG	3 cut(s)	261, 328, 358
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	4 cut(s)	101, 353, 362, 429
Sau3AI	GATC	1 cut(s)	76
ScrFI	CCNGG	4 cut(s)	119, 187, 262, 329
SduI	GDGCHC	2 cut(s)	193, 374
SetI	ASST	9 cut(s)	102, 171, 207, 225, 271, 330, 374, 393, 410
SfaNI	GCATC	2 cut(s)	217, 303
SfcI	CTRYAG	2 cut(s)	101, 359
Sse9I	AATT	5 cut(s)	211, 242, 307, 397, 441
SsiI	CCGC	2 cut(s)	22, 435
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	374
StyD4I	CCNGG	4 cut(s)	117, 185, 260, 327
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	36
TasI	AATT	5 cut(s)	211, 242, 307, 397, 441
TfiI	GAWTC	3 cut(s)	25, 66, 158
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	4 cut(s)	23, 35, 262, 384
TseI	GCWGC	4 cut(s)	100, 352, 361, 428
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	4 cut(s)	23, 35, 262, 384
XapI	RAATTY	3 cut(s)	211, 307, 397
XbaI	TCTAGA	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	194
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.