Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007004

Physical Location & Seq

Genomic Coordinates Reverse (-)

11264126 .. 11265562

Gene Structure 1437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29350.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGACGCTCTCATTGCTCAGCTTCAGAGACAATTTCGTGATTACACCATTTCTCTCTACCAACAGGGGTTTTTGGATGATCAATTTACTGAGTTGAAAAAGCTACAAGATGATGGAAGTCCTGATTTTGTGTCTGAAGTGCTTTCACTTTTCTTTGAAGATTGTGTGAAGCTTATCAGTAACATGGCTAGAGCTTTGGACACGACAGGAACTGTAGATTTTAGTCAGGTAGGTGCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGGTGCCAAGAGGGTCAAAACTTTGTGTGTTAGCTTCAAGGAATGTTGTGAAGCTAAGAACTACGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGGCGTTAAAGACAAAGCTTCAAGATATGTTCAATCTTGAGAAACAGATCATTCAAGCTGGTGGTATAGTTCCTCAAGTGGATATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007276 GO:0007292 GO:0008150 GO:0008152 GO:0009553 GO:0009557 GO:0009560 GO:0009561 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009927 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Hpt

Protein Analysis

156

Amino Acids

17.48

Weight (kDa)

5.0

Isoelectric Point (pI)

30.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hpt	PF01627	46 - 110	1.2e-12	Hpt domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0007004)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03430 AT1G03430 AT3G29350 AT3G29350 AT4G04402 AT5G39340 AT5G39340 AT5G39340 AT5G39340
fragaria_vesca	FvH4_2g24320
malus_domestica	MD03G1272900.v1.1 MD11G1293900.v1.1
prunus_persica	Prupe.8G249400_v2.0.a1 Prupe.8G249400_v2.0.a1
pyrus_communis	pycom03g21740 pycom11g26000
rosa_chinensis	RchiOBHm_Chr6g0292191
rosa_laevigata	RLG00000012054
rosa_multiflora	Rmu_co8470707.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175370
rosa_rugosa	Rorug06G0224400
rosa_samantha	Rh6BG344700 Rh6CG351800 Rh6DG337700
rosa_wichuraiana	Rw6G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AcuI	CTGAAG	2 cut(s)	8, 156
AfaI	GTAC	1 cut(s)	377
AgsI	TTSAA	7 cut(s)	97, 158, 253, 310, 401, 412, 434
AluBI	AGCT	9 cut(s)	22, 103, 172, 194, 264, 306, 326, 397, 437
AluI	AGCT	9 cut(s)	22, 103, 172, 194, 264, 306, 326, 397, 437
Alw26I	GTCTC	1 cut(s)	22
AlwNI	CAGNNNCTG	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	1 cut(s)	107
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	22
BfaI	CTAG	2 cut(s)	189, 237
BfmI	CTRYAG	1 cut(s)	213
BisI	GCNGC	1 cut(s)	359
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	253
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	3 cut(s)	250, 437, 438
Bse3DI	GCAATG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	32, 81
BseXI	GCAGC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	79, 426
Bsp1720I	GCTNAGC	1 cut(s)	18
BspCNI	CTCAG	2 cut(s)	31, 82
BspLI	GGNNCC	1 cut(s)	277
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	12
BssMI	GATC	2 cut(s)	79, 426
Bst4CI	ACNGT	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	18, 90, 327
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	82, 429
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	2 cut(s)	79, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	212
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	184
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	3 cut(s)	18, 90, 327
DpnI	GATC	2 cut(s)	81, 428
DpnII	GATC	2 cut(s)	79, 426
Eco57I	CTGAAG	2 cut(s)	8, 156
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	185, 407, 446
FatI	CATG	1 cut(s)	183
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	359
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	2 cut(s)	189, 237
GluI	GCNGC	1 cut(s)	359
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	187
HindIII	AAGCTT	2 cut(s)	170, 395
Hpy188I	TCNGA	2 cut(s)	27, 136
Hpy188III	TCNNGA	4 cut(s)	38, 122, 401, 416
HpyAV	CCTTC	2 cut(s)	247, 332
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	244, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	3 cut(s)	18, 90, 327
Hsp92II	CATG	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	79, 426
LpnPI	CCDG	5 cut(s)	50, 135, 192, 212, 423
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	189, 237
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	81, 428
MboI	GATC	2 cut(s)	79, 426
MboII	GAAGA	1 cut(s)	170
MfeI	CAATTG	1 cut(s)	248
MluCI	AATT	3 cut(s)	32, 83, 248
MnlI	CCTC	2 cut(s)	276, 462
MseI	TTAA	2 cut(s)	386, 465
MunI	CAATTG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	79, 426
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	386, 465
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	2 cut(s)	79, 426
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	213
SmlI	CTYRAG	3 cut(s)	265, 416, 453
SmoI	CTYRAG	3 cut(s)	265, 416, 453
Sse9I	AATT	3 cut(s)	32, 83, 248
SspMI	CTAG	2 cut(s)	189, 237
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	3 cut(s)	32, 83, 248
TatI	WGTACW	1 cut(s)	375
Tru1I	TTAA	2 cut(s)	386, 465
Tru9I	TTAA	2 cut(s)	386, 465
TseI	GCWGC	1 cut(s)	358
XspI	CTAG	2 cut(s)	189, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.