Rmu_co8470707.1_g000001

phosphotransfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8470707.1
OG0007004
Physical Location & Seq
Reverse (-)
104 .. 1706
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8470707.1_g000001.1.cds

Sequence Viewer

Length: 369 bp
ctgaagaagctccaggatgaaaacagcccagatttcgtggttgaggttgtttctctgttctttcaagattctgagaagcttctcaacaatatggccagggctctagagcagaatgttgtagatttcaaacaagtagatgcctgtgtccatcaattcaagggtagcagtgcctggataggtgcaatgagacttaaaaatgtatgcatcaacttcagaaattattgtgaggcgcagaaccttgaggggtgtttggggtgtttgcaacaagtacgacaagaatgcttggcattaaagaacaatcttgaaaacttgtttaggttggagcaacagatagtggctgctggtggatcaattcctgttatggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Hpt

Protein Analysis

122

Amino Acids

13.79

Weight (kDa)

5.19

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 93
AcuI CTGAAG 2 cut(s) 23, 196
AfaI GTAC 1 cut(s) 270
AgsI TTSAA 4 cut(s) 65, 127, 157, 305
AjnI CCWGG 3 cut(s) 12, 95, 170
AluBI AGCT 2 cut(s) 10, 79
AluI AGCT 2 cut(s) 10, 79
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 171
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 338
AspLEI GCGC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 95
BanII GRGCYC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 325
BccI CCATC 1 cut(s) 156
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BciT130I CCWGG 3 cut(s) 14, 97, 172
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 104
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 3 cut(s) 14, 97, 172
BmrFI CCNGG 3 cut(s) 14, 97, 172
BmsI GCATC 2 cut(s) 127, 213
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 189
BseBI CCWGG 3 cut(s) 14, 97, 172
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 325
BshFI GGCC 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 347
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 64
BspPI GGATC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 347
Bst2UI CCWGG 3 cut(s) 14, 97, 172
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 1 cut(s) 22
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 350
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 1 cut(s) 347
BstNI CCWGG 3 cut(s) 14, 97, 172
BstSCI CCNGG 3 cut(s) 12, 95, 170
BstV1I GCAGC 1 cut(s) 325
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
CaiI CAGNNNCTG 1 cut(s) 171
CfoI GCGC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 269
CviJI RGCY 6 cut(s) 10, 27, 79, 95, 101, 338
CviKI_1 RGCY 6 cut(s) 10, 27, 79, 95, 101, 338
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 349
DpnII GATC 1 cut(s) 347
EaeI YGGCCR 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 103
Eco57I CTGAAG 2 cut(s) 23, 196
EcoRII CCWGG 3 cut(s) 12, 95, 170
EcoT22I ATGCAT 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 103
FaiI YATR 3 cut(s) 92, 202, 362
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 1 cut(s) 232
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 73, 215
Hpy188III TCNNGA 3 cut(s) 65, 104, 302
HpyCH4V TGCA 3 cut(s) 182, 204, 262
HpyF3I CTNAG 1 cut(s) 72
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 347
LmnI GCTCC 2 cut(s) 15, 322
LpnPI CCDG 8 cut(s) 26, 42, 82, 109, 154, 157, 184, 327
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 2 cut(s) 127, 213
MaeI CTAG 1 cut(s) 104
MalI GATC 1 cut(s) 349
MboI GATC 1 cut(s) 347
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 95
MluCI AATT 3 cut(s) 152, 217, 351
MluNI TGGCCA 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 3 cut(s) 37, 220, 235
Mox20I TGGCCA 1 cut(s) 95
Mph1103I ATGCAT 1 cut(s) 206
MscI TGGCCA 1 cut(s) 95
MseI TTAA 2 cut(s) 192, 290
Msp20I TGGCCA 1 cut(s) 95
MspR9I CCNGG 3 cut(s) 14, 97, 172
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 3 cut(s) 14, 97, 172
NdeII GATC 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 206
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 68
PfoI TCCNGGA 1 cut(s) 12
PkrI GCNGC 1 cut(s) 340
Psp6I CCWGG 3 cut(s) 12, 95, 170
PspGI CCWGG 3 cut(s) 12, 95, 170
PstNI CAGNNNCTG 1 cut(s) 171
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 192, 290
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 347
ScrFI CCNGG 3 cut(s) 14, 97, 172
SduI GDGCHC 1 cut(s) 103
SetI ASST 6 cut(s) 12, 48, 81, 181, 240, 320
SfaNI GCATC 2 cut(s) 127, 213
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 3 cut(s) 152, 217, 351
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 3 cut(s) 12, 95, 170
TasI AATT 3 cut(s) 152, 217, 351
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 192, 290
Tru9I TTAA 2 cut(s) 192, 290
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 172
XbaI TCTAGA 1 cut(s) 103
XspI CTAG 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.