AT1G03870

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014289
Physical Location & Seq
Reverse (-)
982381 .. 983544
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G03870.1

Sequence Viewer

Length: 744 bp
ATGGCTACCACTCGTCTAACTCTAGCTCCTCTCCTCCTCATCGCAGCCGTACTACTCGCAACCAAGGCAACGGCTCAGCCGGCAGCCCCCGCTCCAGAGCCTGCTGGTCCCATCAACCTCACTGCGATCCTCGAAAAAGGTGGTCAATTCACTACTTTCATCCATCTTCTAAACATCACTCAAGTCGGTAGTCAAGTGAACATTCAAGTCAATAGTTCATCCGAAGGTATGACGGTGTTCGCACCAACAGACAATGCTTTTCAAAACCTTAAACCCGGAACCCTAAACCAGTTAAGCCCTGACGATCAAGTTAAACTCATTCTCTACCACGTTAGCCCCAAATATTACAGTATGGATGATCTCCTCTCCGTGAGTAACCCGGTTAGGACTCAAGCTTCTGGCCGAGACAACGGTGTTTACGGGCTTAACTTCACCGGCCAAACAAACCAAATCAATGTCTCTACTGGTTATGTGGAGACACGTATTAGCAATTCGTTGAGGCAACAACGTCCTCTCGCAGTTTATGTTGTCGACATGGTTTTGTTGCCCGGTGAGATGTTCGGAGAGCACAAGCTTTCGCCGATTGCTCCTGCCCCTAAATCTAAATCCGGTGGGGTTACCGATGACTCCGGCTCCACTAAGAAGGCAGCGTCACCGTCGGATAAGTCAGGCTCCGGTGAGAAGAAAGTCGGACTAGGGTTTGGTCTTGGACTTATTGTCTTATGTTTGAAATTTCTCTTTTGA

Protein Analysis

247

Amino Acids

26.11

Weight (kDa)

8.93

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 49 - 183 6.1e-21 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03870 AT5G44130
fragaria_vesca FvH4_1g03420
malus_domestica MD15G1174300.v1.1
prunus_persica Prupe.7G241800_v2.0.a1
pyrus_communis pycom15g15590
rosa_chinensis RchiOBHm_Chr2g0088651
rosa_laevigata RLG00000015972
rosa_multiflora Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii Rroxscaffold_2G00152430
rosa_rugosa Rorug01G0485600
rosa_samantha Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana Rw2G003330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 531
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 121
AcoI YGGCCR 2 cut(s) 400, 436
AcsI RAATTY 1 cut(s) 731
AfaI GTAC 1 cut(s) 51
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 3 cut(s) 206, 263, 730
AhdI GACNNNNNGTC 1 cut(s) 716
AluBI AGCT 3 cut(s) 26, 395, 574
AluI AGCT 3 cut(s) 26, 395, 574
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 3 cut(s) 399, 463, 470
AlwI GGATC 1 cut(s) 121
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 2 cut(s) 400, 436
ApeKI GCWGC 3 cut(s) 44, 83, 647
ApoI RAATTY 1 cut(s) 731
AspS9I GGNCC 1 cut(s) 107
AsuC2I CCSGG 3 cut(s) 276, 380, 549
AsuHPI GGTGA 4 cut(s) 424, 563, 645, 689
AvaII GGWCC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 56, 95, 659
BccI CCATC 2 cut(s) 119, 171
BceAI ACGGC 2 cut(s) 32, 87
BcnI CCSGG 3 cut(s) 276, 380, 549
BcoDI GTCTC 3 cut(s) 399, 463, 470
BfaI CTAG 2 cut(s) 23, 695
BisI GCNGC 3 cut(s) 45, 84, 648
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 3 cut(s) 46, 85, 649
Bme1390I CCNGG 3 cut(s) 276, 380, 549
Bme18I GGWCC 1 cut(s) 107
BmeRI GACNNNNNGTC 1 cut(s) 716
BmgT120I GGNCC 1 cut(s) 107
BmiI GGNNCC 4 cut(s) 109, 280, 634, 673
BmrFI CCNGG 3 cut(s) 276, 380, 549
BpmI CTGGAG 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 2 cut(s) 165, 375
BpuMI CCSGG 3 cut(s) 276, 380, 549
BsaAI YACGTR 1 cut(s) 482
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 2 cut(s) 608, 674
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 617, 647
Bse118I RCCGGY 2 cut(s) 79, 434
Bse1I ACTGG 2 cut(s) 289, 469
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 3 cut(s) 159, 218, 361
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 289, 469
BseRI GAGGAG 4 cut(s) 18, 23, 26, 353
BseXI GCAGC 3 cut(s) 56, 95, 659
BshFI GGCC 2 cut(s) 402, 438
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 8 cut(s) 80, 276, 380, 435, 549, 609, 630, 675
BslFI GGGAC 1 cut(s) 93
BsmAI GTCTC 3 cut(s) 399, 463, 470
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 2 cut(s) 402, 438
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 3 cut(s) 126, 304, 358
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 1 cut(s) 90
BspANI GGCC 2 cut(s) 402, 438
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 4 cut(s) 109, 280, 634, 673
BspPI GGATC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 92
BsrFI RCCGGY 2 cut(s) 79, 434
BsrI ACTGG 2 cut(s) 289, 469
BssAI RCCGGY 2 cut(s) 79, 434
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 126, 304, 358
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 4 cut(s) 235, 350, 413, 657
BstBAI YACGTR 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 81, 102
BstDEI CTNAG 2 cut(s) 75, 639
BstEII GGTNACC 1 cut(s) 616
BstF5I GGATG 3 cut(s) 159, 218, 361
BstKTI GATC 3 cut(s) 129, 307, 361
BstMAI GTCTC 3 cut(s) 399, 463, 470
BstMBI GATC 3 cut(s) 126, 304, 358
BstMWI GCNNNNNNNGC 3 cut(s) 65, 80, 89
BstPI GGTNACC 1 cut(s) 616
BstSCI CCNGG 3 cut(s) 274, 378, 547
BstV1I GCAGC 3 cut(s) 56, 95, 659
BsuRI GGCC 2 cut(s) 402, 438
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 3 cut(s) 159, 218, 361
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 81, 102
CaiI CAGNNNCTG 1 cut(s) 101
Cfr10I RCCGGY 2 cut(s) 79, 434
Cfr13I GGNCC 1 cut(s) 107
CseI GACGC 1 cut(s) 639
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 535
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 2 cut(s) 75, 639
DpnI GATC 3 cut(s) 128, 306, 360
DpnII GATC 3 cut(s) 126, 304, 358
DriI GACNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 2 cut(s) 400, 436
Eam1105I GACNNNNNGTC 1 cut(s) 716
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 107
Eco91I GGTNACC 1 cut(s) 616
EcoO65I GGTNACC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 538
FaiI YATR 6 cut(s) 230, 353, 471, 525, 536, 724
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 534
FauI CCCGC 1 cut(s) 97
FblI GTMKAC 1 cut(s) 531
Fnu4HI GCNGC 3 cut(s) 45, 84, 648
FokI GGATG 3 cut(s) 146, 205, 368
Fsp4HI GCNGC 3 cut(s) 45, 84, 648
FspBI CTAG 2 cut(s) 23, 695
GluI GCNGC 3 cut(s) 45, 84, 648
GsuI CTGGAG 1 cut(s) 78
HaeIII GGCC 2 cut(s) 402, 438
HapII CCGG 8 cut(s) 80, 276, 380, 435, 549, 609, 630, 675
HgaI GACGC 1 cut(s) 639
Hin1II CATG 1 cut(s) 538
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 2 cut(s) 393, 572
HinfI GANTC 2 cut(s) 388, 626
HpaII CCGG 8 cut(s) 80, 276, 380, 435, 549, 609, 630, 675
HphI GGTGA 4 cut(s) 424, 563, 645, 689
Hpy166II GTNNAC 3 cut(s) 199, 418, 532
Hpy188I TCNGA 4 cut(s) 223, 563, 661, 692
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 3 cut(s) 199, 418, 532
Hpy99I CGWCG 1 cut(s) 661
HpyAV CCTTC 2 cut(s) 218, 637
HpyCH4III ACNGT 4 cut(s) 235, 350, 413, 657
HpyCH4IV ACGT 3 cut(s) 330, 481, 508
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 80, 89
HpyF3I CTNAG 2 cut(s) 75, 639
HpySE526I ACGT 3 cut(s) 330, 481, 508
Hsp92II CATG 1 cut(s) 538
KroI GCCGGC 1 cut(s) 79
KroNI GCCGGC 1 cut(s) 81
Kzo9I GATC 3 cut(s) 126, 304, 358
LmnI GCTCC 5 cut(s) 31, 97, 592, 638, 677
Lsp1109I GCAGC 3 cut(s) 56, 95, 659
MaeI CTAG 2 cut(s) 23, 695
MaeII ACGT 3 cut(s) 330, 481, 508
MaeIII GTNAC 3 cut(s) 374, 616, 651
MalI GATC 3 cut(s) 128, 306, 360
MbiI CCGCTC 1 cut(s) 92
MboI GATC 3 cut(s) 126, 304, 358
MboII GAAGA 2 cut(s) 158, 694
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 3 cut(s) 146, 490, 731
MlyI GAGTC 2 cut(s) 382, 620
MmeI TCCRAC 2 cut(s) 639, 670
MnlI CCTC 8 cut(s) 39, 44, 47, 128, 140, 374, 492, 522
MroNI GCCGGC 1 cut(s) 79
MseI TTAA 4 cut(s) 270, 293, 312, 426
MspI CCGG 8 cut(s) 80, 276, 380, 435, 549, 609, 630, 675
MspR9I CCNGG 3 cut(s) 276, 380, 549
MwoI GCNNNNNNNGC 3 cut(s) 65, 80, 89
NaeI GCCGGC 1 cut(s) 81
NciI CCSGG 3 cut(s) 276, 380, 549
NdeII GATC 3 cut(s) 126, 304, 358
NgoMIV GCCGGC 1 cut(s) 79
NlaIII CATG 1 cut(s) 538
NlaIV GGNNCC 4 cut(s) 109, 280, 634, 673
NmeAIII GCCGAG 1 cut(s) 428
NmuCI GTSAC 1 cut(s) 651
PdiI GCCGGC 1 cut(s) 81
PkrI GCNGC 3 cut(s) 46, 85, 649
PleI GAGTC 2 cut(s) 382, 620
PpsI GAGTC 2 cut(s) 382, 620
Ppu21I YACGTR 1 cut(s) 482
PspEI GGTNACC 1 cut(s) 616
PspN4I GGNNCC 4 cut(s) 109, 280, 634, 673
PspPI GGNCC 1 cut(s) 107
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 530
SaqAI TTAA 4 cut(s) 270, 293, 312, 426
SatI GCNGC 3 cut(s) 45, 84, 648
Sau3AI GATC 3 cut(s) 126, 304, 358
Sau96I GGNCC 1 cut(s) 107
SchI GAGTC 2 cut(s) 382, 620
ScrFI CCNGG 3 cut(s) 276, 380, 549
SduI GDGCHC 1 cut(s) 570
SinI GGWCC 1 cut(s) 107
SmlI CTYRAG 2 cut(s) 180, 390
SmoI CTYRAG 2 cut(s) 180, 390
Sse9I AATT 3 cut(s) 146, 490, 731
SsiI CCGC 1 cut(s) 90
SspI AATATT 1 cut(s) 344
SspMI CTAG 2 cut(s) 23, 695
StyD4I CCNGG 3 cut(s) 274, 378, 547
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 235, 350, 413, 657
TaiI ACGT 3 cut(s) 333, 484, 511
TaqI TCGA 2 cut(s) 132, 531
TasI AATT 3 cut(s) 146, 490, 731
Tru1I TTAA 4 cut(s) 270, 293, 312, 426
Tru9I TTAA 4 cut(s) 270, 293, 312, 426
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 651
TseI GCWGC 3 cut(s) 44, 83, 647
Tsp45I GTSAC 1 cut(s) 651
TspDTI ATGAA 2 cut(s) 148, 207
TspGWI ACGGA 1 cut(s) 358
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 107
XapI RAATTY 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 531
XspI CTAG 2 cut(s) 23, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.