AT5G44130

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014289
Physical Location & Seq
Forward (+)
17760865 .. 17762089
1225 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G44130.1

Sequence Viewer

Length: 744 bp
ATGGCCACCACTCCTCTCCTCCTCCTTCTCCTCACCGCCGTCTTCCTCTCCACGGAGATAACCGCTCAACGCGCTGCTCCGGCTCCTGGCCCGGCTGGTCCCATCAACATCACGGCAATCCTCGAAAAAGGCGGACAATTTGTTACTCTTATCCGTCTTTTAAACACAACTCAAATAGGAAACCAGATAAACATCCAAATCAACAGTTCATCAGAAGGCATGACCGTGTTAGCACCAACAGACAACGCTTTCCAAAACCTTAAACCCGGAACCCTAAACAAACTAAGCCCGGACGACCAAGTCAAACTCATTCTTTACCATGTCAGTCCCAAATTCTACACATTGGAAGATCTTCTCTCTGTAAGTAACCCGGTCAGAACTCAGGCTTCAGGTCGAGACGTTGGTGGGGTTTACGGACTTAACTTCACCGGTCAAGGGAATCAAGTCAATGTATCTACTGGTGTCGTTGAGACACGTCTCAGTACTTCATTGAGACAAGAACGTCCTCTTGCGGTTTACGTGGTGGACATGGTATTGTTGCCGGAAGAGATGTTTGGAGAACGTAAGATCTCACCGATGGCGCCTCCACCAAAATCAAAATCTCCTGATGTCTCAGATGATTCAGAGTCCTCTAAGAAAGCGGCTGCTCCGTCAGAGTCAGAGAAGTCTGGCTCCGGTGAGATGAATACTGGATTAGGGCTTGGTCTTGGACTTGTTGTGTTGTGTTTGAAATTCCTCCTTTGA

Protein Analysis

247

Amino Acids

26.2

Weight (kDa)

5.53

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 46 - 181 1.2e-18 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03870 AT5G44130
fragaria_vesca FvH4_1g03420
malus_domestica MD15G1174300.v1.1
prunus_persica Prupe.7G241800_v2.0.a1
pyrus_communis pycom15g15590
rosa_chinensis RchiOBHm_Chr2g0088651
rosa_laevigata RLG00000015972
rosa_multiflora Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii Rroxscaffold_2G00152430
rosa_rugosa Rorug01G0485600
rosa_samantha Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana Rw2G003330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 299, 501
AccB1I GGYRCC 1 cut(s) 580
AccBSI CCGCTC 1 cut(s) 65
AccII CGCG 1 cut(s) 72
AciI CCGC 5 cut(s) 36, 63, 132, 512, 641
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 332, 731
AcuI CTGAAG 1 cut(s) 372
AcyI GRCGYC 1 cut(s) 581
AfaI GTAC 1 cut(s) 484
AfiI CCNNNNNNNGG 3 cut(s) 52, 86, 435
AflIII ACRYGT 1 cut(s) 473
AgeI ACCGGT 1 cut(s) 428
AgsI TTSAA 1 cut(s) 730
AjiI CACGTC 1 cut(s) 476
AjnI CCWGG 1 cut(s) 85
AjuI GAANNNNNNNTTGG 2 cut(s) 537, 569
Alw26I GTCTC 5 cut(s) 390, 464, 482, 487, 616
AoxI GGCC 2 cut(s) 3, 88
ApeKI GCWGC 2 cut(s) 74, 644
ApoI RAATTY 2 cut(s) 332, 731
AsiGI ACCGGT 1 cut(s) 428
Asp700I GAANNNNTTC 1 cut(s) 351
AspLEI GCGC 2 cut(s) 74, 583
AspS9I GGNCC 2 cut(s) 89, 98
AsuC2I CCSGG 4 cut(s) 92, 267, 290, 371
AsuHPI GGTGA 4 cut(s) 25, 418, 564, 689
AvaII GGWCC 1 cut(s) 98
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 61, 631
BccI CCATC 2 cut(s) 110, 571
BceAI ACGGC 2 cut(s) 23, 129
BciT130I CCWGG 1 cut(s) 87
BcnI CCSGG 4 cut(s) 92, 267, 290, 371
BcoDI GTCTC 5 cut(s) 390, 464, 482, 487, 616
BfoI RGCGCY 1 cut(s) 584
BglII AGATCT 2 cut(s) 349, 567
BisI GCNGC 3 cut(s) 75, 642, 645
BlsI GCNGC 3 cut(s) 76, 643, 646
BmcAI AGTACT 1 cut(s) 484
Bme1390I CCNGG 5 cut(s) 87, 92, 267, 290, 371
Bme18I GGWCC 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 476
BmgT120I GGNCC 2 cut(s) 89, 98
BmiI GGNNCC 5 cut(s) 84, 100, 271, 582, 673
BmrFI CCNGG 5 cut(s) 87, 92, 267, 290, 371
BpiI GAAGAC 1 cut(s) 34
BpuMI CCSGG 4 cut(s) 92, 267, 290, 371
BsaAI YACGTR 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 581
BsaJI CCNNGG 1 cut(s) 51
BsaWI WCCGGW 2 cut(s) 428, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 86, 435
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 2 cut(s) 463, 694
Bse8I GATNNNNATC 1 cut(s) 191
BseBI CCWGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 191
BseLI CCNNNNNNNGG 3 cut(s) 52, 86, 435
BseMII CTCAG 3 cut(s) 395, 493, 627
BseNI ACTGG 2 cut(s) 463, 694
BseRI GAGGAG 3 cut(s) 8, 11, 20
BseXI GCAGC 2 cut(s) 61, 631
Bsh1236I CGCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 5, 90
BshNI GGYRCC 1 cut(s) 580
BshTI ACCGGT 1 cut(s) 428
BsiSI CCGG 8 cut(s) 80, 92, 267, 290, 371, 429, 542, 675
BslFI GGGAC 2 cut(s) 84, 312
BslI CCNNNNNNNGG 3 cut(s) 52, 86, 435
BsmAI GTCTC 5 cut(s) 390, 464, 482, 487, 616
BsmBI CGTCTC 2 cut(s) 390, 482
BsmFI GGGAC 2 cut(s) 84, 312
BsnI GGCC 2 cut(s) 5, 90
Bsp143I GATC 2 cut(s) 349, 567
BspACI CCGC 5 cut(s) 36, 63, 132, 512, 641
BspANI GGCC 2 cut(s) 5, 90
BspCNI CTCAG 3 cut(s) 394, 492, 626
BspFNI CGCG 1 cut(s) 72
BspLI GGNNCC 5 cut(s) 84, 100, 271, 582, 673
BspT107I GGYRCC 1 cut(s) 580
BsrBI CCGCTC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 2 cut(s) 463, 694
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 2 cut(s) 349, 567
BssNI GRCGYC 1 cut(s) 581
Bst2UI CCWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 206, 226
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 520
BstDEI CTNAG 5 cut(s) 284, 381, 479, 613, 633
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 2 cut(s) 74, 583
BstKTI GATC 2 cut(s) 352, 570
BstMAI GTCTC 5 cut(s) 390, 464, 482, 487, 616
BstMBI GATC 2 cut(s) 349, 567
BstMWI GCNNNNNNNGC 2 cut(s) 71, 80
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 5 cut(s) 85, 90, 265, 288, 369
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 2 cut(s) 61, 631
BstV2I GAAGAC 1 cut(s) 34
BstX2I RGATCY 2 cut(s) 349, 567
BstYI RGATCY 2 cut(s) 349, 567
BsuRI GGCC 2 cut(s) 5, 90
BtgI CCRYGG 1 cut(s) 51
BtrI CACGTC 1 cut(s) 476
BtsCI GGATG 1 cut(s) 192
CfoI GCGC 2 cut(s) 74, 583
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 2 cut(s) 89, 98
Csp6I GTAC 1 cut(s) 483
CspAI ACCGGT 1 cut(s) 428
CviAII CATG 3 cut(s) 220, 320, 529
CviJI RGCY 9 cut(s) 5, 83, 90, 95, 288, 386, 644, 672, 700
CviKI_1 RGCY 9 cut(s) 5, 83, 90, 95, 288, 386, 644, 672, 700
CviQI GTAC 1 cut(s) 483
DdeI CTNAG 5 cut(s) 284, 381, 479, 613, 633
DinI GGCGCC 1 cut(s) 582
DpnI GATC 2 cut(s) 351, 569
DpnII GATC 2 cut(s) 349, 567
DraI TTTAAA 1 cut(s) 162
DrdI GACNNNNNNGTC 2 cut(s) 299, 501
DseDI GACNNNNNNGTC 2 cut(s) 299, 501
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
EciI GGCGGA 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 85
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
Esp3I CGTCTC 2 cut(s) 390, 482
FaeI CATG 3 cut(s) 223, 323, 532
FaiI YATR 3 cut(s) 221, 321, 530
FaqI GGGAC 2 cut(s) 84, 312
FatI CATG 3 cut(s) 219, 319, 528
Fnu4HI GCNGC 3 cut(s) 75, 642, 645
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 3 cut(s) 75, 642, 645
GlaI GCGC 2 cut(s) 73, 582
GluI GCNGC 3 cut(s) 75, 642, 645
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 2 cut(s) 5, 90
HapII CCGG 8 cut(s) 80, 92, 267, 290, 371, 429, 542, 675
HhaI GCGC 2 cut(s) 74, 583
Hin1I GRCGYC 1 cut(s) 581
Hin1II CATG 3 cut(s) 223, 323, 532
Hin6I GCGC 2 cut(s) 72, 581
HinP1I GCGC 2 cut(s) 72, 581
HinfI GANTC 4 cut(s) 439, 620, 626, 656
HpaII CCGG 8 cut(s) 80, 92, 267, 290, 371, 429, 542, 675
HphI GGTGA 4 cut(s) 25, 418, 564, 689
Hpy166II GTNNAC 3 cut(s) 412, 517, 526
Hpy188I TCNGA 6 cut(s) 214, 377, 616, 625, 655, 661
Hpy188III TCNNGA 2 cut(s) 395, 605
Hpy8I GTNNAC 3 cut(s) 412, 517, 526
HpyAV CCTTC 2 cut(s) 35, 209
HpyCH4III ACNGT 2 cut(s) 206, 226
HpyCH4IV ACGT 5 cut(s) 399, 475, 502, 519, 562
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 80
HpyF3I CTNAG 5 cut(s) 284, 381, 479, 613, 633
HpySE526I ACGT 5 cut(s) 399, 475, 502, 519, 562
Hsp92I GRCGYC 1 cut(s) 581
Hsp92II CATG 3 cut(s) 223, 323, 532
HspAI GCGC 2 cut(s) 72, 581
KasI GGCGCC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 349, 567
LmnI GCTCC 4 cut(s) 82, 88, 652, 677
Lsp1109I GCAGC 2 cut(s) 61, 631
MaeII ACGT 5 cut(s) 399, 475, 502, 519, 562
MaeIII GTNAC 2 cut(s) 142, 365
MalI GATC 2 cut(s) 351, 569
MbiI CCGCTC 1 cut(s) 65
MboI GATC 2 cut(s) 349, 567
MboII GAAGA 4 cut(s) 34, 344, 359, 557
MflI RGATCY 2 cut(s) 349, 567
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 137, 332, 731
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 581
MlyI GAGTC 2 cut(s) 635, 665
MnlI CCTC 9 cut(s) 24, 29, 32, 41, 56, 131, 516, 594, 640
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 351
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 161, 261, 420
MslI CAYNNNNRTG 1 cut(s) 224
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 8 cut(s) 80, 92, 267, 290, 371, 429, 542, 675
MspR9I CCNGG 5 cut(s) 87, 92, 267, 290, 371
MvaI CCWGG 1 cut(s) 87
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 2 cut(s) 71, 80
NarI GGCGCC 1 cut(s) 581
NciI CCSGG 4 cut(s) 92, 267, 290, 371
NdeII GATC 2 cut(s) 349, 567
NlaIII CATG 3 cut(s) 223, 323, 532
NlaIV GGNNCC 5 cut(s) 84, 100, 271, 582, 673
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 2 cut(s) 439, 620
PflFI GACNNNGTC 1 cut(s) 299
PinAI ACCGGT 1 cut(s) 428
PkrI GCNGC 3 cut(s) 76, 643, 646
PleI GAGTC 2 cut(s) 634, 664
PluTI GGCGCC 1 cut(s) 584
PpsI GAGTC 2 cut(s) 634, 664
Ppu21I YACGTR 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PspN4I GGNNCC 5 cut(s) 84, 100, 271, 582, 673
PspPI GGNCC 2 cut(s) 89, 98
PsuI RGATCY 2 cut(s) 349, 567
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 1 cut(s) 484
RsaNI GTAC 1 cut(s) 483
RseI CAYNNNNRTG 1 cut(s) 224
SaqAI TTAA 3 cut(s) 161, 261, 420
SatI GCNGC 3 cut(s) 75, 642, 645
Sau3AI GATC 2 cut(s) 349, 567
Sau96I GGNCC 2 cut(s) 89, 98
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 2 cut(s) 635, 665
ScrFI CCNGG 5 cut(s) 87, 92, 267, 290, 371
SetI ASST 7 cut(s) 261, 394, 402, 478, 505, 522, 565
SfoI GGCGCC 1 cut(s) 582
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 3 cut(s) 137, 332, 731
SsiI CCGC 5 cut(s) 36, 63, 132, 512, 641
SspDI GGCGCC 1 cut(s) 580
StyD4I CCNGG 5 cut(s) 85, 90, 265, 288, 369
TaaI ACNGT 2 cut(s) 206, 226
TaiI ACGT 5 cut(s) 402, 478, 505, 522, 565
TaqI TCGA 2 cut(s) 123, 394
TasI AATT 3 cut(s) 137, 332, 731
TatI WGTACW 1 cut(s) 482
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 2 cut(s) 439, 620
Tru1I TTAA 3 cut(s) 161, 261, 420
Tru9I TTAA 3 cut(s) 161, 261, 420
TseI GCWGC 2 cut(s) 74, 644
TspDTI ATGAA 3 cut(s) 198, 477, 698
TspGWI ACGGA 4 cut(s) 68, 143, 429, 639
Tth111I GACNNNGTC 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 98
XapI RAATTY 2 cut(s) 332, 731
XmnI GAANNNNTTC 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.