Rh2CG040600

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014289
Physical Location & Seq
Reverse (-)
3267615 .. 3268794
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG040600.1

Sequence Viewer

Length: 753 bp
ATGATCATCACCATGGCAGCTTCCACACATTACCTCCCTGTCCTCCTCCTCGCCGTCGCCGCCTTCTTCGTCCTCCATGCCCAAGCCCAAACGGCACCCGCACCCGCCCCGCCCGGCAAACTTAACTTCACCGGCATCCTAGACAAAGCTGGCCAATACACCACCTTCCTCCGCCTCCTCACCCAAACCCAAGTGGCCACCCAAATCCAAAGCCAGCTCAACTCCTCCACCGAGGGCCTAACCGTCCTTGCACCCACCGACAACGCCTTCACAAACCTCAAAGCCGGTACCTTAAACGACCTCTCCTCCCAACAACAAGTCCAGCTAGTTCTGTACCATGTTCTCCCCAAGTACTACACTCTCGCCAGTCTCCTAACGGTCTCGAACCCCGTGAGAACTCAGTCCTCGTCCCAAAACGGTGGCGGATCTTACGGCCTCAACTTCACCGGATCCGGTGGGAACCAAGTGAATGTGTCGAGCGGGGCGGTGACTACTCAGATCAACAATGCGTTGAGGCAGCAGTTTCCGTTGGCTGTGTACCAAGTTGACAAGGTGTTGTTACCTAATGACCTGTTTAGTGACTCGTCACCGGCTCCTACTCCGACTAAAACTCCGGCCGGAAGCACCAACACGACGACGGCGACAAAGGCCGCGGAGCCATCTGCGGACAGTGCTAATGGTTCGAGCAAGAAGAGCGTGGGATTCGTGGGATTGGCTCTAGGGGTGGTTTTGTTTTTCATGGGAACTAGCTAG

Protein Analysis

250

Amino Acids

26.04

Weight (kDa)

9.16

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 52 - 188 5.1e-22 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03870 AT5G44130
fragaria_vesca FvH4_1g03420
malus_domestica MD15G1174300.v1.1
prunus_persica Prupe.7G241800_v2.0.a1
pyrus_communis pycom15g15590
rosa_chinensis RchiOBHm_Chr2g0088651
rosa_laevigata RLG00000015972
rosa_multiflora Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii Rroxscaffold_2G00152430
rosa_rugosa Rorug01G0485600
rosa_samantha Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana Rw2G003330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 2 cut(s) 94, 287
AccBSI CCGCTC 1 cut(s) 480
AccII CGCG 1 cut(s) 653
AclWI GGATC 3 cut(s) 433, 444, 457
AcoI YGGCCR 3 cut(s) 151, 195, 615
AfaI GTAC 4 cut(s) 289, 335, 353, 539
AluBI AGCT 5 cut(s) 20, 149, 217, 325, 750
AluI AGCT 5 cut(s) 20, 149, 217, 325, 750
Alw26I GTCTC 2 cut(s) 374, 385
AlwI GGATC 3 cut(s) 433, 444, 457
AoxI GGCC 6 cut(s) 151, 195, 235, 433, 615, 648
ApeKI GCWGC 2 cut(s) 17, 517
Asp718I GGTACC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 5 cut(s) 121, 172, 436, 499, 579
BalI TGGCCA 2 cut(s) 153, 197
BamHI GGATCC 1 cut(s) 449
BanI GGYRCC 2 cut(s) 94, 287
BbvI GCAGC 2 cut(s) 29, 529
BccI CCATC 1 cut(s) 667
BceAI ACGGC 4 cut(s) 38, 108, 448, 654
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 374, 385
BfaI CTAG 5 cut(s) 140, 326, 719, 747, 751
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 4 cut(s) 18, 60, 518, 651
BlsI GCNGC 4 cut(s) 19, 61, 519, 652
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 1 cut(s) 114
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 6 cut(s) 96, 289, 451, 461, 594, 657
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 385
BsaJI CCNNGG 3 cut(s) 12, 231, 651
BsaWI WCCGGW 2 cut(s) 446, 452
BsaXI ACNNNNNCTCC 8 cut(s) 18, 48, 287, 290, 317, 320, 595, 625
Bse118I RCCGGY 3 cut(s) 131, 284, 589
Bse1I ACTGG 1 cut(s) 366
BseDI CCNNGG 3 cut(s) 12, 231, 651
BseGI GGATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 413, 509
BseNI ACTGG 1 cut(s) 366
BseRI GAGGAG 5 cut(s) 35, 38, 167, 214, 295
BseX3I CGGCCG 1 cut(s) 615
BseXI GCAGC 2 cut(s) 29, 529
Bsh1236I CGCG 1 cut(s) 653
Bsh1285I CGRYCG 1 cut(s) 618
BshFI GGCC 6 cut(s) 153, 197, 237, 435, 617, 650
BshNI GGYRCC 2 cut(s) 94, 287
BsiEI CGRYCG 1 cut(s) 618
BsiSI CCGG 8 cut(s) 114, 132, 285, 447, 453, 590, 614, 618
BslFI GGGAC 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 374, 385
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 6 cut(s) 153, 197, 237, 435, 617, 650
Bso31I GGTCTC 1 cut(s) 385
Bsp143I GATC 4 cut(s) 3, 425, 449, 498
Bsp19I CCATGG 1 cut(s) 12
BspANI GGCC 6 cut(s) 153, 197, 237, 435, 617, 650
BspCNI CTCAG 2 cut(s) 412, 508
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 6 cut(s) 96, 289, 451, 461, 594, 657
BspPI GGATC 3 cut(s) 433, 444, 457
BspQI GCTCTTC 1 cut(s) 686
BspT107I GGYRCC 2 cut(s) 94, 287
BspTNI GGTCTC 1 cut(s) 385
BsrBI CCGCTC 1 cut(s) 480
BsrFI RCCGGY 3 cut(s) 131, 284, 589
BsrI ACTGG 1 cut(s) 366
BssAI RCCGGY 3 cut(s) 131, 284, 589
BssECI CCNNGG 3 cut(s) 12, 231, 651
BssMI GATC 4 cut(s) 3, 425, 449, 498
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 4 cut(s) 244, 379, 419, 671
Bst6I CTCTTC 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 151, 215
BstDEI CTNAG 2 cut(s) 399, 495
BstDSI CCRYGG 2 cut(s) 12, 651
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 653
BstKTI GATC 4 cut(s) 6, 428, 452, 501
BstMAI GTCTC 2 cut(s) 374, 385
BstMBI GATC 4 cut(s) 3, 425, 449, 498
BstMCI CGRYCG 1 cut(s) 618
BstMWI GCNNNNNNNGC 5 cut(s) 59, 92, 647, 671, 693
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 29, 529
BstX2I RGATCY 2 cut(s) 425, 449
BstXI CCANNNNNNTGG 1 cut(s) 419
BstYI RGATCY 2 cut(s) 425, 449
BstZI CGGCCG 1 cut(s) 615
BsuRI GGCC 6 cut(s) 153, 197, 237, 435, 617, 650
BtgI CCRYGG 2 cut(s) 12, 651
BtsCI GGATG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 676
Cac8I GCNNGC 2 cut(s) 151, 215
Cfr10I RCCGGY 3 cut(s) 131, 284, 589
Cfr13I GGNCC 1 cut(s) 235
Cfr42I CCGCGG 1 cut(s) 654
Csp6I GTAC 4 cut(s) 288, 334, 352, 538
CviAII CATG 4 cut(s) 13, 77, 338, 739
CviQI GTAC 4 cut(s) 288, 334, 352, 538
DdeI CTNAG 2 cut(s) 399, 495
DpnI GATC 4 cut(s) 5, 427, 451, 500
DpnII GATC 4 cut(s) 3, 425, 449, 498
EaeI YGGCCR 3 cut(s) 151, 195, 615
EagI CGGCCG 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 686
EarI CTCTTC 1 cut(s) 686
EciI GGCGGA 2 cut(s) 161, 438
EclXI CGGCCG 1 cut(s) 615
Eco130I CCWWGG 1 cut(s) 12
Eco31I GGTCTC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 235
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 16, 80, 341, 742
FaiI YATR 4 cut(s) 14, 78, 339, 740
FaqI GGGAC 1 cut(s) 394
FatI CATG 4 cut(s) 12, 76, 337, 738
FauI CCCGC 4 cut(s) 106, 112, 117, 473
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 4 cut(s) 18, 60, 518, 651
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 18, 60, 518, 651
FspBI CTAG 5 cut(s) 140, 326, 719, 747, 751
GluI GCNGC 4 cut(s) 18, 60, 518, 651
HaeIII GGCC 6 cut(s) 153, 197, 237, 435, 617, 650
HapII CCGG 8 cut(s) 114, 132, 285, 447, 453, 590, 614, 618
Hin1II CATG 4 cut(s) 16, 80, 341, 742
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HinfI GANTC 2 cut(s) 581, 702
HpaII CCGG 8 cut(s) 114, 132, 285, 447, 453, 590, 614, 618
HphI GGTGA 5 cut(s) 121, 172, 436, 499, 579
Hpy166II GTNNAC 2 cut(s) 538, 547
Hpy188I TCNGA 2 cut(s) 498, 603
Hpy188III TCNNGA 1 cut(s) 382
Hpy8I GTNNAC 2 cut(s) 538, 547
Hpy99I CGWCG 3 cut(s) 59, 637, 640
HpyAV CCTTC 3 cut(s) 73, 175, 277
HpyCH4III ACNGT 4 cut(s) 244, 379, 419, 671
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 92, 647, 671, 693
HpyF3I CTNAG 2 cut(s) 399, 495
Hsp92II CATG 4 cut(s) 16, 80, 341, 742
KpnI GGTACC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 3
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 4 cut(s) 3, 425, 449, 498
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 2 cut(s) 598, 655
Lsp1109I GCAGC 2 cut(s) 29, 529
LweI GCATC 1 cut(s) 144
MaeI CTAG 5 cut(s) 140, 326, 719, 747, 751
MaeIII GTNAC 4 cut(s) 487, 558, 578, 585
MalI GATC 4 cut(s) 5, 427, 451, 500
MbiI CCGCTC 1 cut(s) 480
MboI GATC 4 cut(s) 3, 425, 449, 498
MboII GAAGA 2 cut(s) 58, 703
MflI RGATCY 2 cut(s) 425, 449
MlsI TGGCCA 2 cut(s) 153, 197
MluNI TGGCCA 2 cut(s) 153, 197
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 1 cut(s) 626
Mox20I TGGCCA 2 cut(s) 153, 197
MscI TGGCCA 2 cut(s) 153, 197
MseI TTAA 2 cut(s) 123, 293
MslI CAYNNNNRTG 1 cut(s) 11
Msp20I TGGCCA 2 cut(s) 153, 197
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 8 cut(s) 114, 132, 285, 447, 453, 590, 614, 618
MspR9I CCNGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 5 cut(s) 59, 92, 647, 671, 693
NciI CCSGG 1 cut(s) 114
NcoI CCATGG 1 cut(s) 12
NdeII GATC 4 cut(s) 3, 425, 449, 498
NlaIII CATG 4 cut(s) 16, 80, 341, 742
NlaIV GGNNCC 6 cut(s) 96, 289, 451, 461, 594, 657
NmuCI GTSAC 3 cut(s) 487, 578, 585
PciSI GCTCTTC 1 cut(s) 686
PcsI WCGNNNNNNNCGW 1 cut(s) 638
PfeI GAWTC 1 cut(s) 702
PkrI GCNGC 4 cut(s) 19, 61, 519, 652
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PspN4I GGNNCC 6 cut(s) 96, 289, 451, 461, 594, 657
PspPI GGNCC 1 cut(s) 235
PsuI RGATCY 2 cut(s) 425, 449
RsaI GTAC 4 cut(s) 289, 335, 353, 539
RsaNI GTAC 4 cut(s) 288, 334, 352, 538
RseI CAYNNNNRTG 1 cut(s) 11
SacII CCGCGG 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 2 cut(s) 123, 293
SatI GCNGC 4 cut(s) 18, 60, 518, 651
Sau3AI GATC 4 cut(s) 3, 425, 449, 498
Sau96I GGNCC 1 cut(s) 235
ScaI AGTACT 1 cut(s) 353
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 114
SfaNI GCATC 1 cut(s) 144
Sfr303I CCGCGG 1 cut(s) 654
SgrBI CCGCGG 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 11
SspMI CTAG 5 cut(s) 140, 326, 719, 747, 751
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 4 cut(s) 244, 379, 419, 671
TaqI TCGA 3 cut(s) 383, 476, 683
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 62, 653
TfiI GAWTC 1 cut(s) 702
Tru1I TTAA 2 cut(s) 123, 293
Tru9I TTAA 2 cut(s) 123, 293
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 3 cut(s) 487, 578, 585
TseI GCWGC 2 cut(s) 17, 517
Tsp45I GTSAC 3 cut(s) 487, 578, 585
TspDTI ATGAA 1 cut(s) 727
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 1 cut(s) 676
XspI CTAG 5 cut(s) 140, 326, 719, 747, 751
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.