Rh2AG041100

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0014289
Physical Location & Seq
Reverse (-)
3247998 .. 3250870
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG041100.1

Sequence Viewer

Length: 744 bp
ATGGCAGCTTCCACACATTATTGCCTCCCTGTCCTCCTCCTCGCCGTCGCCGCCTTCTTCGTCCTCCATGCTCAAGCCCAAACGGCGCCCGCCCCTGCCCCGCCCGGCAAACTTAACTTCACCGGCATCCTAGACAAAGCTGGCCAATACACCACCTTCCTCCGCCTCCTCACCCAAACCCAAGTTGCCACCCAAATCCAAAGCCAGCTCAACTCCTCCACCGAGGGCCTAACCGTCCTTGCACCCACCGACAACGCCTTCACAAACCTCAAAGCCGGTACCTTAAACGACCTCTCCTCCCAACAACAAGTCCAGCTAGTTCTGTACCATGTTCTCCCCAAGTACTACACTCTCGCCAGTCTCCTAACGGTCTCGAACCCCGTGAGAACCCAGTCCTCGTCCCAAAACGGCGGCGGATCTTACGGCCTCAACTTCACCGGATCCGGTGGGAACCAAGTGAATGTGTCGAGCGGGGCGGTGACTACTCAGATCAACAATGCGTTGAGGCAGCAGTTTCCGTTGGCTGTGTACCAAGTTGACAAGGTGTTGTTACCTAATGACCTGTTTAGTGACTCGTCACCGGCTCCTACTCCGACTAAAACTCTGGCCGGAAGCACCAACACGACGACGGCGACAAAGGCCGCGGAGCCATCTGCGGACAGTGCTAATGGTTCGAGCAAGAAGAGCGTGGGATTCGTGGGATTGGCTCTAGGGGTGGTTTTGTTTTTCATGGGAACTAGCTAA

Protein Analysis

247

Amino Acids

25.7

Weight (kDa)

9.01

Isoelectric Point (pI)

34.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 49 - 185 4.9e-22 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03870 AT5G44130
fragaria_vesca FvH4_1g03420
malus_domestica MD15G1174300.v1.1
prunus_persica Prupe.7G241800_v2.0.a1
pyrus_communis pycom15g15590
rosa_chinensis RchiOBHm_Chr2g0088651
rosa_laevigata RLG00000015972
rosa_multiflora Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii Rroxscaffold_2G00152430
rosa_rugosa Rorug01G0485600
rosa_samantha Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana Rw2G003330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 2 cut(s) 85, 278
AccBSI CCGCTC 1 cut(s) 471
AccII CGCG 1 cut(s) 644
AclWI GGATC 3 cut(s) 424, 435, 448
AcoI YGGCCR 2 cut(s) 142, 606
AcyI GRCGYC 1 cut(s) 86
AfaI GTAC 4 cut(s) 280, 326, 344, 530
AluBI AGCT 5 cut(s) 8, 140, 208, 316, 741
AluI AGCT 5 cut(s) 8, 140, 208, 316, 741
Alw26I GTCTC 2 cut(s) 365, 376
AlwI GGATC 3 cut(s) 424, 435, 448
AoxI GGCC 5 cut(s) 142, 226, 424, 606, 639
ApeKI GCWGC 2 cut(s) 5, 508
Asp718I GGTACC 1 cut(s) 278
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 1 cut(s) 105
AsuHPI GGTGA 5 cut(s) 112, 163, 427, 490, 570
BalI TGGCCA 1 cut(s) 144
BamHI GGATCC 1 cut(s) 440
BanI GGYRCC 2 cut(s) 85, 278
BbvI GCAGC 2 cut(s) 17, 520
BccI CCATC 1 cut(s) 658
BceAI ACGGC 5 cut(s) 29, 99, 424, 439, 645
BcnI CCSGG 1 cut(s) 105
BcoDI GTCTC 2 cut(s) 365, 376
BfaI CTAG 4 cut(s) 131, 317, 710, 738
BfoI RGCGCY 1 cut(s) 89
BglI GCCNNNNNGGC 1 cut(s) 83
BisI GCNGC 5 cut(s) 6, 51, 412, 509, 642
BlsI GCNGC 5 cut(s) 7, 52, 413, 510, 643
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 6 cut(s) 87, 280, 442, 452, 585, 648
BmrFI CCNGG 1 cut(s) 105
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 385
BpuEI CTTGAG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 222, 642
BsaWI WCCGGW 2 cut(s) 437, 443
BsaXI ACNNNNNCTCC 4 cut(s) 278, 281, 308, 311
Bse118I RCCGGY 3 cut(s) 122, 275, 580
Bse1I ACTGG 2 cut(s) 357, 391
BseDI CCNNGG 2 cut(s) 222, 642
BseGI GGATG 1 cut(s) 126
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 2 cut(s) 357, 391
BseRI GAGGAG 5 cut(s) 26, 29, 158, 205, 286
BseXI GCAGC 2 cut(s) 17, 520
Bsh1236I CGCG 1 cut(s) 644
BshFI GGCC 5 cut(s) 144, 228, 426, 608, 641
BshNI GGYRCC 2 cut(s) 85, 278
BsiSI CCGG 7 cut(s) 105, 123, 276, 438, 444, 581, 609
BslFI GGGAC 1 cut(s) 385
BsmAI GTCTC 2 cut(s) 365, 376
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 5 cut(s) 144, 228, 426, 608, 641
Bso31I GGTCTC 1 cut(s) 376
Bsp143I GATC 3 cut(s) 416, 440, 489
BspANI GGCC 5 cut(s) 144, 228, 426, 608, 641
BspCNI CTCAG 1 cut(s) 499
BspFNI CGCG 1 cut(s) 644
BspLI GGNNCC 6 cut(s) 87, 280, 442, 452, 585, 648
BspPI GGATC 3 cut(s) 424, 435, 448
BspQI GCTCTTC 1 cut(s) 677
BspT107I GGYRCC 2 cut(s) 85, 278
BspTNI GGTCTC 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 471
BsrFI RCCGGY 3 cut(s) 122, 275, 580
BsrI ACTGG 2 cut(s) 357, 391
BssAI RCCGGY 3 cut(s) 122, 275, 580
BssECI CCNNGG 2 cut(s) 222, 642
BssMI GATC 3 cut(s) 416, 440, 489
BssNI GRCGYC 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 235, 370, 662
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 1 cut(s) 86
BstC8I GCNNGC 3 cut(s) 90, 142, 206
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 644
BstH2I RGCGCY 1 cut(s) 89
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 3 cut(s) 419, 443, 492
BstMAI GTCTC 2 cut(s) 365, 376
BstMBI GATC 3 cut(s) 416, 440, 489
BstMWI GCNNNNNNNGC 5 cut(s) 50, 83, 638, 662, 684
BstSCI CCNGG 1 cut(s) 103
BstUI CGCG 1 cut(s) 644
BstV1I GCAGC 2 cut(s) 17, 520
BstX2I RGATCY 2 cut(s) 416, 440
BstYI RGATCY 2 cut(s) 416, 440
BsuRI GGCC 5 cut(s) 144, 228, 426, 608, 641
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 90, 142, 206
CfoI GCGC 1 cut(s) 88
Cfr10I RCCGGY 3 cut(s) 122, 275, 580
Cfr13I GGNCC 1 cut(s) 226
Cfr42I CCGCGG 1 cut(s) 645
Csp6I GTAC 4 cut(s) 279, 325, 343, 529
CviAII CATG 3 cut(s) 68, 329, 730
CviQI GTAC 4 cut(s) 279, 325, 343, 529
DdeI CTNAG 1 cut(s) 486
DinI GGCGCC 1 cut(s) 87
DpnI GATC 3 cut(s) 418, 442, 491
DpnII GATC 3 cut(s) 416, 440, 489
EaeI YGGCCR 2 cut(s) 142, 606
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
EciI GGCGGA 2 cut(s) 152, 429
Eco31I GGTCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 226
EgeI GGCGCC 1 cut(s) 87
EheI GGCGCC 1 cut(s) 87
FaeI CATG 3 cut(s) 71, 332, 733
FaiI YATR 3 cut(s) 69, 330, 731
FaqI GGGAC 1 cut(s) 385
FatI CATG 3 cut(s) 67, 328, 729
FauI CCCGC 3 cut(s) 97, 108, 464
Fnu4HI GCNGC 5 cut(s) 6, 51, 412, 509, 642
FokI GGATG 1 cut(s) 113
Fsp4HI GCNGC 5 cut(s) 6, 51, 412, 509, 642
FspBI CTAG 4 cut(s) 131, 317, 710, 738
GlaI GCGC 1 cut(s) 87
GluI GCNGC 5 cut(s) 6, 51, 412, 509, 642
HaeII RGCGCY 1 cut(s) 89
HaeIII GGCC 5 cut(s) 144, 228, 426, 608, 641
HapII CCGG 7 cut(s) 105, 123, 276, 438, 444, 581, 609
HhaI GCGC 1 cut(s) 88
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 3 cut(s) 71, 332, 733
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 2 cut(s) 572, 693
HpaII CCGG 7 cut(s) 105, 123, 276, 438, 444, 581, 609
HphI GGTGA 5 cut(s) 112, 163, 427, 490, 570
Hpy166II GTNNAC 2 cut(s) 529, 538
Hpy188I TCNGA 2 cut(s) 489, 594
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 2 cut(s) 529, 538
Hpy99I CGWCG 3 cut(s) 50, 628, 631
HpyAV CCTTC 3 cut(s) 64, 166, 268
HpyCH4III ACNGT 3 cut(s) 235, 370, 662
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 83, 638, 662, 684
HpyF3I CTNAG 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 3 cut(s) 71, 332, 733
HspAI GCGC 1 cut(s) 86
KasI GGCGCC 1 cut(s) 85
KpnI GGTACC 1 cut(s) 282
KspI CCGCGG 1 cut(s) 645
Kzo9I GATC 3 cut(s) 416, 440, 489
LguI GCTCTTC 1 cut(s) 677
LmnI GCTCC 2 cut(s) 589, 646
Lsp1109I GCAGC 2 cut(s) 17, 520
LweI GCATC 1 cut(s) 135
MaeI CTAG 4 cut(s) 131, 317, 710, 738
MaeIII GTNAC 4 cut(s) 478, 549, 569, 576
MalI GATC 3 cut(s) 418, 442, 491
MbiI CCGCTC 1 cut(s) 471
MboI GATC 3 cut(s) 416, 440, 489
MboII GAAGA 2 cut(s) 49, 694
MflI RGATCY 2 cut(s) 416, 440
MlsI TGGCCA 1 cut(s) 144
MluNI TGGCCA 1 cut(s) 144
Mly113I GGCGCC 1 cut(s) 86
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 617
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 2 cut(s) 114, 284
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 7 cut(s) 105, 123, 276, 438, 444, 581, 609
MspR9I CCNGG 1 cut(s) 105
MvnI CGCG 1 cut(s) 644
MwoI GCNNNNNNNGC 5 cut(s) 50, 83, 638, 662, 684
NarI GGCGCC 1 cut(s) 86
NciI CCSGG 1 cut(s) 105
NdeII GATC 3 cut(s) 416, 440, 489
NlaIII CATG 3 cut(s) 71, 332, 733
NlaIV GGNNCC 6 cut(s) 87, 280, 442, 452, 585, 648
NmuCI GTSAC 3 cut(s) 478, 569, 576
PciSI GCTCTTC 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 629
PfeI GAWTC 1 cut(s) 693
PkrI GCNGC 5 cut(s) 7, 52, 413, 510, 643
PleI GAGTC 1 cut(s) 566
PluTI GGCGCC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 566
PspN4I GGNNCC 6 cut(s) 87, 280, 442, 452, 585, 648
PspPI GGNCC 1 cut(s) 226
PsuI RGATCY 2 cut(s) 416, 440
RsaI GTAC 4 cut(s) 280, 326, 344, 530
RsaNI GTAC 4 cut(s) 279, 325, 343, 529
SacII CCGCGG 1 cut(s) 645
SapI GCTCTTC 1 cut(s) 677
SaqAI TTAA 2 cut(s) 114, 284
SatI GCNGC 5 cut(s) 6, 51, 412, 509, 642
Sau3AI GATC 3 cut(s) 416, 440, 489
Sau96I GGNCC 1 cut(s) 226
ScaI AGTACT 1 cut(s) 344
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 105
SfaNI GCATC 1 cut(s) 135
SfoI GGCGCC 1 cut(s) 87
Sfr303I CCGCGG 1 cut(s) 645
SgrBI CCGCGG 1 cut(s) 645
SmlI CTYRAG 1 cut(s) 72
SmoI CTYRAG 1 cut(s) 72
SspDI GGCGCC 1 cut(s) 85
SspMI CTAG 4 cut(s) 131, 317, 710, 738
StyD4I CCNGG 1 cut(s) 103
TaaI ACNGT 3 cut(s) 235, 370, 662
TaqI TCGA 3 cut(s) 374, 467, 674
TatI WGTACW 1 cut(s) 342
TauI GCSGC 3 cut(s) 53, 414, 644
TfiI GAWTC 1 cut(s) 693
Tru1I TTAA 2 cut(s) 114, 284
Tru9I TTAA 2 cut(s) 114, 284
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 3 cut(s) 478, 569, 576
TseI GCWGC 2 cut(s) 5, 508
Tsp45I GTSAC 3 cut(s) 478, 569, 576
TspDTI ATGAA 1 cut(s) 718
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 1 cut(s) 667
XspI CTAG 4 cut(s) 131, 317, 710, 738
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.