Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014289

Physical Location & Seq

Genomic Coordinates Reverse (-)

1893343 .. 1894725

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCAGCTTCCACACATTCCCTCCCTCTCCTCCTCCTCCTCCTTGCCGTCGTCGTCTTCCACGCCGAAGCCCAAACCGCTCCCGCCCCGGCCCCATCCGGCCCACTAAACTTCACCGGCATCCTAGACAAAGCTGGCCAATACACCACCTTCCTCCGCCTCCTCTCCCAAACCCAAGTCGCCACCCAAATCCAAAGCCAGCTCAACTCCACCACTGAGGGCCTCACCGTCTTTGCCCCCACCGACAACGCCTTCACAAACCTCAAAGCCGGAACCCTAAACGACCTCTCCTCCGAACAACAAGTCCAGCTCGTTCTCTACCATGTTCTCCCCAAGTACTACACTCTCGCAAGTCTCCTAACAGTCTCAAACCCCGTGAGGACTCAGTCCTCCTCCCAAAACGGCGGCGGATCTTACGGGCTGAACTTCACCGGATCCGGAGGGAACCAAGTGAACGTGTCAAGTGGGGCGGTGACTACTCAGATCAACAATGCATTGAGGCAGCAGTTTCCGTTGGCTGTGTACCAAATTGACAAGGTGTTGTTGCCTAATGACATGTTCGCTGAGGCGTCTCCGGCTCCTACTGCTGCGAAAACTCCGGCCGGAAGCACCAACACGACGAAAGGGACGGTGGCCGCGGAGCCGTCTACGGATGGGACTAGTGGTTCGAGCAAGACGACTGTGGGATCGTTCGTGGGATTGGCTCTAGGGCTGGCTTTGTTTTTCATGGGGAGCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

247

Amino Acids

25.43

Weight (kDa)

6.26

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	47 - 183	3e-23	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03870 AT5G44130
fragaria_vesca	FvH4_1g03420
malus_domestica	MD15G1174300.v1.1
prunus_persica	Prupe.7G241800_v2.0.a1
pyrus_communis	pycom15g15590
rosa_chinensis	RchiOBHm_Chr2g0088651
rosa_laevigata	RLG00000015972
rosa_multiflora	Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii	Rroxscaffold_2G00152430
rosa_rugosa	Rorug01G0485600
rosa_samantha	Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana	Rw2G003330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	647
AccII	CGCG	1 cut(s)	638
AccIII	TCCGGA	1 cut(s)	437
AciI	CCGC	8 cut(s)	78, 84, 157, 405, 408, 470, 636, 638
AclWI	GGATC	4 cut(s)	418, 429, 442, 694
AcoI	YGGCCR	3 cut(s)	136, 600, 633
AcyI	GRCGYC	1 cut(s)	569
AfaI	GTAC	2 cut(s)	338, 524
AflIII	ACRYGT	2 cut(s)	456, 555
AhlI	ACTAGT	1 cut(s)	659
AloI	GAACNNNNNNTCC	4 cut(s)	288, 320, 649, 681
AluBI	AGCT	5 cut(s)	8, 134, 202, 310, 738
AluI	AGCT	5 cut(s)	8, 134, 202, 310, 738
Alw26I	GTCTC	3 cut(s)	359, 370, 576
AlwI	GGATC	4 cut(s)	418, 429, 442, 694
Aor13HI	TCCGGA	1 cut(s)	437
AoxI	GGCC	6 cut(s)	90, 100, 136, 220, 600, 633
ApeKI	GCWGC	4 cut(s)	5, 502, 587, 735
ArsI	GACNNNNNNTTYG	4 cut(s)	288, 320, 649, 681
AspS9I	GGNCC	3 cut(s)	91, 101, 220
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	4 cut(s)	106, 217, 421, 484
BalI	TGGCCA	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	49
BbvCI	CCTCAGC	1 cut(s)	564
BbvI	GCAGC	3 cut(s)	17, 514, 574
BccI	CCATC	2 cut(s)	103, 647
BceAI	ACGGC	3 cut(s)	32, 418, 628
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	3 cut(s)	359, 370, 576
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	4 cut(s)	125, 660, 707, 739
BisI	GCNGC	6 cut(s)	6, 406, 503, 588, 636, 736
BlsI	GCNGC	6 cut(s)	7, 407, 504, 589, 637, 737
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	91, 101, 220
BmiI	GGNNCC	6 cut(s)	93, 274, 436, 446, 579, 642
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	564
BpuMI	CCSGG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	87, 636
BsaWI	WCCGGW	2 cut(s)	431, 437
BsaXI	ACNNNNNCTCC	6 cut(s)	6, 36, 272, 275, 302, 305
Bse118I	RCCGGY	1 cut(s)	116
BseAI	TCCGGA	1 cut(s)	437
BseDI	CCNNGG	2 cut(s)	87, 636
BseGI	GGATG	3 cut(s)	95, 120, 658
BseMII	CTCAG	4 cut(s)	207, 398, 494, 555
BseRI	GAGGAG	7 cut(s)	20, 23, 26, 29, 152, 280, 382
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	3 cut(s)	17, 514, 574
Bsh1236I	CGCG	1 cut(s)	638
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	6 cut(s)	92, 102, 138, 222, 602, 635
BsiEI	CGRYCG	1 cut(s)	603
BsiSI	CCGG	9 cut(s)	89, 99, 117, 270, 432, 438, 575, 599, 603
BslFI	GGGAC	2 cut(s)	640, 670
BsmAI	GTCTC	3 cut(s)	359, 370, 576
BsmBI	CGTCTC	1 cut(s)	576
BsmFI	GGGAC	2 cut(s)	640, 670
BsnI	GGCC	6 cut(s)	92, 102, 138, 222, 602, 635
Bsp13I	TCCGGA	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	410, 434, 483, 686
BspACI	CCGC	8 cut(s)	78, 84, 157, 405, 408, 470, 636, 638
BspANI	GGCC	6 cut(s)	92, 102, 138, 222, 602, 635
BspCNI	CTCAG	4 cut(s)	208, 397, 493, 556
BspEI	TCCGGA	1 cut(s)	437
BspFNI	CGCG	1 cut(s)	638
BspLI	GGNNCC	6 cut(s)	93, 274, 436, 446, 579, 642
BspPI	GGATC	4 cut(s)	418, 429, 442, 694
BsrBI	CCGCTC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	87, 636
BssMI	GATC	4 cut(s)	410, 434, 483, 686
BssNI	GRCGYC	1 cut(s)	569
Bst4CI	ACNGT	4 cut(s)	229, 364, 631, 682
BstACI	GRCGYC	1 cut(s)	569
BstC8I	GCNNGC	3 cut(s)	136, 200, 714
BstDEI	CTNAG	4 cut(s)	216, 384, 480, 564
BstDSI	CCRYGG	1 cut(s)	636
BstF5I	GGATG	3 cut(s)	95, 120, 658
BstFNI	CGCG	1 cut(s)	638
BstKTI	GATC	4 cut(s)	413, 437, 486, 689
BstMAI	GTCTC	3 cut(s)	359, 370, 576
BstMBI	GATC	4 cut(s)	410, 434, 483, 686
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 575, 584
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	17, 514, 574
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	410, 434
BstYI	RGATCY	2 cut(s)	410, 434
BstZI	CGGCCG	1 cut(s)	600
BsuRI	GGCC	6 cut(s)	92, 102, 138, 222, 602, 635
BtgI	CCRYGG	1 cut(s)	636
BtsCI	GGATG	3 cut(s)	95, 120, 658
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	136, 200, 714
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	3 cut(s)	91, 101, 220
Cfr42I	CCGCGG	1 cut(s)	639
CseI	GACGC	1 cut(s)	558
Csp6I	GTAC	2 cut(s)	337, 523
CviAII	CATG	3 cut(s)	323, 556, 727
CviQI	GTAC	2 cut(s)	337, 523
DdeI	CTNAG	4 cut(s)	216, 384, 480, 564
DpnI	GATC	4 cut(s)	412, 436, 485, 688
DpnII	GATC	4 cut(s)	410, 434, 483, 686
EaeI	YGGCCR	3 cut(s)	136, 600, 633
EagI	CGGCCG	1 cut(s)	600
EciI	GGCGGA	2 cut(s)	146, 423
EclXI	CGGCCG	1 cut(s)	600
Eco52I	CGGCCG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	576
FaeI	CATG	3 cut(s)	326, 559, 730
FaiI	YATR	3 cut(s)	324, 557, 728
FaqI	GGGAC	2 cut(s)	640, 670
FatI	CATG	3 cut(s)	322, 555, 726
FauI	CCCGC	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	647
Fnu4HI	GCNGC	6 cut(s)	6, 406, 503, 588, 636, 736
FokI	GGATG	3 cut(s)	82, 107, 665
Fsp4HI	GCNGC	6 cut(s)	6, 406, 503, 588, 636, 736
FspBI	CTAG	4 cut(s)	125, 660, 707, 739
GluI	GCNGC	6 cut(s)	6, 406, 503, 588, 636, 736
HaeIII	GGCC	6 cut(s)	92, 102, 138, 222, 602, 635
HapII	CCGG	9 cut(s)	89, 99, 117, 270, 432, 438, 575, 599, 603
HgaI	GACGC	1 cut(s)	558
Hin1I	GRCGYC	1 cut(s)	569
Hin1II	CATG	3 cut(s)	326, 559, 730
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	9 cut(s)	89, 99, 117, 270, 432, 438, 575, 599, 603
HphI	GGTGA	4 cut(s)	106, 217, 421, 484
Hpy166II	GTNNAC	3 cut(s)	454, 523, 648
Hpy188I	TCNGA	2 cut(s)	295, 483
Hpy188III	TCNNGA	1 cut(s)	438
Hpy8I	GTNNAC	3 cut(s)	454, 523, 648
Hpy99I	CGWCG	3 cut(s)	53, 56, 622
HpyAV	CCTTC	2 cut(s)	160, 262
HpyCH4III	ACNGT	4 cut(s)	229, 364, 631, 682
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	1 cut(s)	494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 575, 584
HpyF3I	CTNAG	4 cut(s)	216, 384, 480, 564
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	569
Hsp92II	CATG	3 cut(s)	326, 559, 730
Kpn2I	TCCGGA	1 cut(s)	437
KspI	CCGCGG	1 cut(s)	639
Kzo9I	GATC	4 cut(s)	410, 434, 483, 686
LmnI	GCTCC	4 cut(s)	85, 583, 640, 732
Lsp1109I	GCAGC	3 cut(s)	17, 514, 574
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	4 cut(s)	125, 660, 707, 739
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	4 cut(s)	412, 436, 485, 688
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	4 cut(s)	410, 434, 483, 686
MboII	GAAGA	1 cut(s)	49
MflI	RGATCY	2 cut(s)	410, 434
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	1 cut(s)	528
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	376
Mox20I	TGGCCA	1 cut(s)	138
Mph1103I	ATGCAT	1 cut(s)	496
MroI	TCCGGA	1 cut(s)	437
MscI	TGGCCA	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	638
MspI	CCGG	9 cut(s)	89, 99, 117, 270, 432, 438, 575, 599, 603
MspR9I	CCNGG	1 cut(s)	89
MvnI	CGCG	1 cut(s)	638
MwoI	GCNNNNNNNGC	3 cut(s)	77, 575, 584
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	4 cut(s)	410, 434, 483, 686
NlaIII	CATG	3 cut(s)	326, 559, 730
NlaIV	GGNNCC	6 cut(s)	93, 274, 436, 446, 579, 642
NmuCI	GTSAC	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	496
NspI	RCATGY	1 cut(s)	559
PciI	ACATGT	1 cut(s)	555
PcsI	WCGNNNNNNNCGW	1 cut(s)	674
PflFI	GACNNNGTC	1 cut(s)	385
PkrI	GCNGC	6 cut(s)	7, 407, 504, 589, 637, 737
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PscI	ACATGT	1 cut(s)	555
PspN4I	GGNNCC	6 cut(s)	93, 274, 436, 446, 579, 642
PspPI	GGNCC	3 cut(s)	91, 101, 220
PsuI	RGATCY	2 cut(s)	410, 434
PsyI	GACNNNGTC	1 cut(s)	385
RsaI	GTAC	2 cut(s)	338, 524
RsaNI	GTAC	2 cut(s)	337, 523
SacII	CCGCGG	1 cut(s)	639
SatI	GCNGC	6 cut(s)	6, 406, 503, 588, 636, 736
Sau3AI	GATC	4 cut(s)	410, 434, 483, 686
Sau96I	GGNCC	3 cut(s)	91, 101, 220
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	89
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	639
SgrBI	CCGCGG	1 cut(s)	639
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	1 cut(s)	528
SsiI	CCGC	8 cut(s)	78, 84, 157, 405, 408, 470, 636, 638
SspMI	CTAG	4 cut(s)	125, 660, 707, 739
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	4 cut(s)	229, 364, 631, 682
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	1 cut(s)	668
TasI	AATT	1 cut(s)	528
TatI	WGTACW	1 cut(s)	336
TauI	GCSGC	2 cut(s)	408, 638
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	4 cut(s)	5, 502, 587, 735
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	1 cut(s)	715
TspGWI	ACGGA	2 cut(s)	501, 665
TspRI	CASTG	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	385
XceI	RCATGY	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	647
XspI	CTAG	4 cut(s)	125, 660, 707, 739
ZrmI	AGTACT	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.