RLG00000015972

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014289
Physical Location & Seq
Reverse (-)
2885931 .. 2886677
747 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015972

Sequence Viewer

Length: 747 bp
ATGGCAGCTTCCACACATTGCCTCCCTGTCCTCCTCCTCGCCGTCGCCGTCGCCGTCTTCTTCGTCCTCCATGCCCAAGCCCAAACCGCACCCGCCCCGGCCCCGCCCGGCAAACTTAACTTCACCGGCATCCTAGATAAAGCTGGCCAATACACCACCTTCCTCCGCCTCCTCACCCAAACCCAAGTGGCCACCCAAATCCAAAGCCAGCTCAACTCCTCCACCGAGGGCCTAACCGTCCTTGCACCCACCGACAACGCCTTCACAAACCTCAAAGCGGGTACCTTAAACAACCTCTCCTCCCAACAACAAGTCCAGCTAGTTCTGTACCATGTTCTCCCCAAGTACTACACTCTCGCCAGTCTCCTAACGGTCTCGAACCCCGTGAGAACTCAGTCCTCGTCCCAAAACGGCGGCGGATCTTACGGCCTCAACTTCACCGGATCCGGTGGGAACCAAGTGAATGTGTCGAGCGGGGCGGTGACTACTCAGATCAACAATGCGTTGAGGCAGCAGTTTCCGTTGGCTGTGTACCAAGTTGACAAGGTGTTGTTGCCTAATGACATGTTTAGTGATGCGTCACCGGCTCCTACTCCTGCTAAAACTCCGGCCGGAAGCACCAACACGACGACGGCGACAAAGGCCGCGGAGCCATCTGCCTACAGTGCTAATGGTTCGAGCAAGAAGAGTGCGGGATTTGTGGGACTGGCTCTAGGGGTGGTTTTGTTTTTCATGGGGACTAGCTAG

Protein Analysis

249

Amino Acids

25.71

Weight (kDa)

9.41

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 50 - 186 3.6e-22 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014289)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03870 AT5G44130
fragaria_vesca FvH4_1g03420
malus_domestica MD15G1174300.v1.1
prunus_persica Prupe.7G241800_v2.0.a1
pyrus_communis pycom15g15590
rosa_chinensis RchiOBHm_Chr2g0088651
rosa_laevigata RLG00000015972
rosa_multiflora Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii Rroxscaffold_2G00152430
rosa_rugosa Rorug01G0485600
rosa_samantha Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana Rw2G003330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 281
AccB1I GGYRCC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 474
AccII CGCG 1 cut(s) 647
AclWI GGATC 3 cut(s) 427, 438, 451
AcoI YGGCCR 3 cut(s) 145, 189, 609
AfaI GTAC 4 cut(s) 283, 329, 347, 533
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 564
AluBI AGCT 5 cut(s) 8, 143, 211, 319, 744
AluI AGCT 5 cut(s) 8, 143, 211, 319, 744
Alw26I GTCTC 2 cut(s) 368, 379
AlwI GGATC 3 cut(s) 427, 438, 451
AoxI GGCC 7 cut(s) 99, 145, 189, 229, 427, 609, 642
ApeKI GCWGC 2 cut(s) 5, 511
Asp718I GGTACC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 100, 229
AsuC2I CCSGG 2 cut(s) 98, 108
AsuHPI GGTGA 5 cut(s) 115, 166, 430, 493, 573
BalI TGGCCA 2 cut(s) 147, 191
BamHI GGATCC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 49
BbvI GCAGC 2 cut(s) 17, 523
BccI CCATC 1 cut(s) 661
BceAI ACGGC 6 cut(s) 26, 32, 38, 427, 442, 648
BcnI CCSGG 2 cut(s) 98, 108
BcoDI GTCTC 2 cut(s) 368, 379
BfaI CTAG 5 cut(s) 134, 320, 713, 741, 745
BfmI CTRYAG 1 cut(s) 661
BisI GCNGC 4 cut(s) 6, 415, 512, 645
BlsI GCNGC 4 cut(s) 7, 416, 513, 646
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 2 cut(s) 98, 108
BmgT120I GGNCC 2 cut(s) 100, 229
BmiI GGNNCC 6 cut(s) 102, 283, 445, 455, 588, 651
BmrFI CCNGG 2 cut(s) 98, 108
BmsI GCATC 2 cut(s) 138, 565
BpiI GAAGAC 1 cut(s) 49
BpuMI CCSGG 2 cut(s) 98, 108
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 3 cut(s) 96, 225, 645
BsaWI WCCGGW 2 cut(s) 440, 446
BsaXI ACNNNNNCTCC 6 cut(s) 6, 36, 281, 284, 311, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 2 cut(s) 125, 583
Bse1I ACTGG 2 cut(s) 360, 711
Bse3DI GCAATG 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 96, 225, 645
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 407, 503
BseNI ACTGG 2 cut(s) 360, 711
BseRI GAGGAG 5 cut(s) 23, 26, 161, 208, 289
BseX3I CGGCCG 1 cut(s) 609
BseXI GCAGC 2 cut(s) 17, 523
Bsh1236I CGCG 1 cut(s) 647
Bsh1285I CGRYCG 1 cut(s) 612
BshFI GGCC 7 cut(s) 101, 147, 191, 231, 429, 611, 644
BshNI GGYRCC 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 612
BsiSI CCGG 8 cut(s) 98, 108, 126, 441, 447, 584, 608, 612
BslFI GGGAC 2 cut(s) 388, 717
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 368, 379
BsmFI GGGAC 2 cut(s) 388, 717
BsnI GGCC 7 cut(s) 101, 147, 191, 231, 429, 611, 644
Bso31I GGTCTC 1 cut(s) 379
Bsp143I GATC 3 cut(s) 419, 443, 492
BspANI GGCC 7 cut(s) 101, 147, 191, 231, 429, 611, 644
BspCNI CTCAG 2 cut(s) 406, 502
BspFNI CGCG 1 cut(s) 647
BspLI GGNNCC 6 cut(s) 102, 283, 445, 455, 588, 651
BspPI GGATC 3 cut(s) 427, 438, 451
BspT107I GGYRCC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 379
BsrBI CCGCTC 1 cut(s) 474
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 2 cut(s) 125, 583
BsrI ACTGG 2 cut(s) 360, 711
BssAI RCCGGY 2 cut(s) 125, 583
BssECI CCNNGG 3 cut(s) 96, 225, 645
BssMI GATC 3 cut(s) 419, 443, 492
Bst4CI ACNGT 3 cut(s) 238, 373, 665
Bst6I CTCTTC 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 145, 209
BstDEI CTNAG 2 cut(s) 393, 489
BstDSI CCRYGG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 647
BstKTI GATC 3 cut(s) 422, 446, 495
BstMAI GTCTC 2 cut(s) 368, 379
BstMBI GATC 3 cut(s) 419, 443, 492
BstMCI CGRYCG 1 cut(s) 612
BstMWI GCNNNNNNNGC 4 cut(s) 86, 584, 641, 665
BstNSI RCATGY 1 cut(s) 568
BstSCI CCNGG 2 cut(s) 96, 106
BstSFI CTRYAG 1 cut(s) 661
BstUI CGCG 1 cut(s) 647
BstV1I GCAGC 2 cut(s) 17, 523
BstV2I GAAGAC 1 cut(s) 49
BstX2I RGATCY 2 cut(s) 419, 443
BstYI RGATCY 2 cut(s) 419, 443
BstZI CGGCCG 1 cut(s) 609
BsuRI GGCC 7 cut(s) 101, 147, 191, 231, 429, 611, 644
BtgI CCRYGG 1 cut(s) 645
BtsCI GGATG 1 cut(s) 129
BtsIMutI CAGTG 1 cut(s) 670
Cac8I GCNNGC 2 cut(s) 145, 209
Cfr10I RCCGGY 2 cut(s) 125, 583
Cfr13I GGNCC 2 cut(s) 100, 229
Cfr42I CCGCGG 1 cut(s) 648
CseI GACGC 1 cut(s) 567
Csp6I GTAC 4 cut(s) 282, 328, 346, 532
CviAII CATG 4 cut(s) 71, 332, 565, 733
CviQI GTAC 4 cut(s) 282, 328, 346, 532
DdeI CTNAG 2 cut(s) 393, 489
DpnI GATC 3 cut(s) 421, 445, 494
DpnII GATC 3 cut(s) 419, 443, 492
EaeI YGGCCR 3 cut(s) 145, 189, 609
EagI CGGCCG 1 cut(s) 609
Eam1104I CTCTTC 1 cut(s) 680
EarI CTCTTC 1 cut(s) 680
EciI GGCGGA 2 cut(s) 155, 432
EclXI CGGCCG 1 cut(s) 609
Eco31I GGTCTC 1 cut(s) 379
Eco52I CGGCCG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 229
FaeI CATG 4 cut(s) 74, 335, 568, 736
FaiI YATR 4 cut(s) 72, 333, 566, 734
FaqI GGGAC 2 cut(s) 388, 717
FatI CATG 4 cut(s) 70, 331, 564, 732
FauI CCCGC 5 cut(s) 100, 111, 271, 467, 685
Fnu4HI GCNGC 4 cut(s) 6, 415, 512, 645
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 4 cut(s) 6, 415, 512, 645
FspBI CTAG 5 cut(s) 134, 320, 713, 741, 745
GluI GCNGC 4 cut(s) 6, 415, 512, 645
HaeIII GGCC 7 cut(s) 101, 147, 191, 231, 429, 611, 644
HapII CCGG 8 cut(s) 98, 108, 126, 441, 447, 584, 608, 612
HgaI GACGC 1 cut(s) 567
Hin1II CATG 4 cut(s) 74, 335, 568, 736
HincII GTYRAC 1 cut(s) 541
HindII GTYRAC 1 cut(s) 541
HpaII CCGG 8 cut(s) 98, 108, 126, 441, 447, 584, 608, 612
HphI GGTGA 5 cut(s) 115, 166, 430, 493, 573
Hpy166II GTNNAC 2 cut(s) 532, 541
Hpy188I TCNGA 1 cut(s) 492
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 2 cut(s) 532, 541
Hpy99I CGWCG 4 cut(s) 47, 53, 631, 634
HpyAV CCTTC 2 cut(s) 169, 271
HpyCH4III ACNGT 3 cut(s) 238, 373, 665
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 4 cut(s) 86, 584, 641, 665
HpyF3I CTNAG 2 cut(s) 393, 489
Hsp92II CATG 4 cut(s) 74, 335, 568, 736
KpnI GGTACC 1 cut(s) 285
KspI CCGCGG 1 cut(s) 648
Kzo9I GATC 3 cut(s) 419, 443, 492
LmnI GCTCC 2 cut(s) 592, 649
Lsp1109I GCAGC 2 cut(s) 17, 523
LweI GCATC 2 cut(s) 138, 565
MaeI CTAG 5 cut(s) 134, 320, 713, 741, 745
MaeIII GTNAC 2 cut(s) 481, 579
MalI GATC 3 cut(s) 421, 445, 494
MbiI CCGCTC 1 cut(s) 474
MboI GATC 3 cut(s) 419, 443, 492
MboII GAAGA 3 cut(s) 49, 52, 697
MflI RGATCY 2 cut(s) 419, 443
MlsI TGGCCA 2 cut(s) 147, 191
MluNI TGGCCA 2 cut(s) 147, 191
Mox20I TGGCCA 2 cut(s) 147, 191
MscI TGGCCA 2 cut(s) 147, 191
MseI TTAA 2 cut(s) 117, 287
Msp20I TGGCCA 2 cut(s) 147, 191
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 8 cut(s) 98, 108, 126, 441, 447, 584, 608, 612
MspR9I CCNGG 2 cut(s) 98, 108
MvnI CGCG 1 cut(s) 647
MwoI GCNNNNNNNGC 4 cut(s) 86, 584, 641, 665
NciI CCSGG 2 cut(s) 98, 108
NdeII GATC 3 cut(s) 419, 443, 492
NlaIII CATG 4 cut(s) 74, 335, 568, 736
NlaIV GGNNCC 6 cut(s) 102, 283, 445, 455, 588, 651
NmuCI GTSAC 2 cut(s) 481, 579
NspI RCATGY 1 cut(s) 568
PciI ACATGT 1 cut(s) 564
PcsI WCGNNNNNNNCGW 3 cut(s) 45, 51, 632
PkrI GCNGC 4 cut(s) 7, 416, 513, 646
PscI ACATGT 1 cut(s) 564
PspN4I GGNNCC 6 cut(s) 102, 283, 445, 455, 588, 651
PspPI GGNCC 2 cut(s) 100, 229
PsuI RGATCY 2 cut(s) 419, 443
RsaI GTAC 4 cut(s) 283, 329, 347, 533
RsaNI GTAC 4 cut(s) 282, 328, 346, 532
SacII CCGCGG 1 cut(s) 648
SaqAI TTAA 2 cut(s) 117, 287
SatI GCNGC 4 cut(s) 6, 415, 512, 645
Sau3AI GATC 3 cut(s) 419, 443, 492
Sau96I GGNCC 2 cut(s) 100, 229
ScaI AGTACT 1 cut(s) 347
ScrFI CCNGG 2 cut(s) 98, 108
SfaNI GCATC 2 cut(s) 138, 565
SfcI CTRYAG 1 cut(s) 661
Sfr303I CCGCGG 1 cut(s) 648
SgrBI CCGCGG 1 cut(s) 648
SspMI CTAG 5 cut(s) 134, 320, 713, 741, 745
StyD4I CCNGG 2 cut(s) 96, 106
TaaI ACNGT 3 cut(s) 238, 373, 665
TaqI TCGA 3 cut(s) 377, 470, 677
TatI WGTACW 1 cut(s) 345
TauI GCSGC 2 cut(s) 417, 647
Tru1I TTAA 2 cut(s) 117, 287
Tru9I TTAA 2 cut(s) 117, 287
TscAI CASTG 1 cut(s) 670
TseFI GTSAC 2 cut(s) 481, 579
TseI GCWGC 2 cut(s) 5, 511
Tsp45I GTSAC 2 cut(s) 481, 579
TspDTI ATGAA 1 cut(s) 721
TspGWI ACGGA 1 cut(s) 510
TspRI CASTG 1 cut(s) 670
XceI RCATGY 1 cut(s) 568
XspI CTAG 5 cut(s) 134, 320, 713, 741, 745
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.