Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0014289

Physical Location & Seq

Genomic Coordinates Reverse (-)

2785175 .. 2786654

Gene Structure 1480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCAGCTTCCACACATTGCCTCCCTGTCCTCCTCCTCGCCGTCACCGCCTTCTTCGTCCTCCATGCCCAAGCCCAAACGGCACCCGCCCCCGCCCCGCCCGGCAAACTTAACTTCACCGGCATCCTAGACAAAGCTGGCCAATACACCACCTTCCTCCGCCTCCTCACCCAAACCCAAGTGGCCACCCAAATCCAAAGCCAGCTCAACTCCTCCACCGAGGGCCTAACCGTCCTTGCACCCACCGACAACGCCTTCACAAACCTCAAAGCCGGTACCTTAAACGACCTCTCCTCCCAACAACAAGTCCAGCTAGTTCTGTACCATGTTCTCCCCAAGTACTACACTCTCGCCAGTCTCCTAACGGTCTCGAACCCCGTGAGAACTCAGTCCTCGTCCCAAAACGGCGGCGGATCTTACGGCCTCAACTTCACCGGATCCGGTGGGAACCAAGTGAATGTGTCGAGCGGGGCGGTGACTACTCAGATCAACAATGCGTTGAGGCAGCAGTTTCCGTTGGCTGTGTACCAAGTTGACAAGGTGTTGTTACCTAATGACCTGTTTAGTGACGCGTCACCGGCTCCTACTCCGACTAAAACTCCGGCCGGAAGCACCAACACGACGACGGCGACAAAGGCCGCAGAGCCATCTGCGGACAGTGCTAATGGTTCGAGCAAGAAGAGCGTGGGATTCGTGGGATTGGCTCTAGGGGTGGTTTTGTTTTTCATGGGAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

246

Amino Acids

25.54

Weight (kDa)

9.04

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	48 - 184	4.9e-22	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03870 AT5G44130
fragaria_vesca	FvH4_1g03420
malus_domestica	MD15G1174300.v1.1
prunus_persica	Prupe.7G241800_v2.0.a1
pyrus_communis	pycom15g15590
rosa_chinensis	RchiOBHm_Chr2g0088651
rosa_laevigata	RLG00000015972
rosa_multiflora	Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii	Rroxscaffold_2G00152430
rosa_rugosa	Rorug01G0485600
rosa_samantha	Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana	Rw2G003330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	82, 275
AccBSI	CCGCTC	1 cut(s)	468
AccII	CGCG	1 cut(s)	572
AclWI	GGATC	3 cut(s)	421, 432, 445
AcoI	YGGCCR	3 cut(s)	139, 183, 603
AfaI	GTAC	4 cut(s)	277, 323, 341, 527
AflIII	ACRYGT	1 cut(s)	570
AluBI	AGCT	5 cut(s)	8, 137, 205, 313, 738
AluI	AGCT	5 cut(s)	8, 137, 205, 313, 738
Alw26I	GTCTC	2 cut(s)	362, 373
AlwI	GGATC	3 cut(s)	421, 432, 445
AoxI	GGCC	6 cut(s)	139, 183, 223, 421, 603, 636
ApeKI	GCWGC	2 cut(s)	5, 505
Asp718I	GGTACC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	6 cut(s)	37, 109, 160, 424, 487, 567
BalI	TGGCCA	2 cut(s)	141, 185
BamHI	GGATCC	1 cut(s)	437
BanI	GGYRCC	2 cut(s)	82, 275
BbvI	GCAGC	2 cut(s)	17, 517
BccI	CCATC	1 cut(s)	655
BceAI	ACGGC	5 cut(s)	26, 96, 421, 436, 642
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	362, 373
BfaI	CTAG	5 cut(s)	128, 314, 707, 735, 739
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	4 cut(s)	6, 409, 506, 639
BlsI	GCNGC	4 cut(s)	7, 410, 507, 640
BmcAI	AGTACT	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	5 cut(s)	84, 277, 439, 449, 582
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	2 cut(s)	434, 440
BsaXI	ACNNNNNCTCC	8 cut(s)	6, 36, 275, 278, 305, 308, 583, 613
Bse118I	RCCGGY	3 cut(s)	119, 272, 577
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	1 cut(s)	123
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	401, 497
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	5 cut(s)	23, 26, 155, 202, 283
BseX3I	CGGCCG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	17, 517
Bsh1236I	CGCG	1 cut(s)	572
Bsh1285I	CGRYCG	1 cut(s)	606
BshFI	GGCC	6 cut(s)	141, 185, 225, 423, 605, 638
BshNI	GGYRCC	2 cut(s)	82, 275
BsiEI	CGRYCG	1 cut(s)	606
BsiSI	CCGG	8 cut(s)	102, 120, 273, 435, 441, 578, 602, 606
BslFI	GGGAC	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	362, 373
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	6 cut(s)	141, 185, 225, 423, 605, 638
Bso31I	GGTCTC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	413, 437, 486
BspANI	GGCC	6 cut(s)	141, 185, 225, 423, 605, 638
BspCNI	CTCAG	2 cut(s)	400, 496
BspFNI	CGCG	1 cut(s)	572
BspLI	GGNNCC	5 cut(s)	84, 277, 439, 449, 582
BspPI	GGATC	3 cut(s)	421, 432, 445
BspQI	GCTCTTC	1 cut(s)	674
BspT107I	GGYRCC	2 cut(s)	82, 275
BspTNI	GGTCTC	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	468
BsrDI	GCAATG	1 cut(s)	16
BsrFI	RCCGGY	3 cut(s)	119, 272, 577
BsrI	ACTGG	1 cut(s)	354
BssAI	RCCGGY	3 cut(s)	119, 272, 577
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	413, 437, 486
Bst4CI	ACNGT	3 cut(s)	232, 367, 659
Bst6I	CTCTTC	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	139, 203
BstDEI	CTNAG	2 cut(s)	387, 483
BstF5I	GGATG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	572
BstKTI	GATC	3 cut(s)	416, 440, 489
BstMAI	GTCTC	2 cut(s)	362, 373
BstMBI	GATC	3 cut(s)	413, 437, 486
BstMCI	CGRYCG	1 cut(s)	606
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 80, 578, 635, 659, 681
BstSCI	CCNGG	1 cut(s)	100
BstUI	CGCG	1 cut(s)	572
BstV1I	GCAGC	2 cut(s)	17, 517
BstX2I	RGATCY	2 cut(s)	413, 437
BstYI	RGATCY	2 cut(s)	413, 437
BstZI	CGGCCG	1 cut(s)	603
BsuRI	GGCC	6 cut(s)	141, 185, 225, 423, 605, 638
BtsCI	GGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	2 cut(s)	139, 203
Cfr10I	RCCGGY	3 cut(s)	119, 272, 577
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	2 cut(s)	561, 578
Csp6I	GTAC	4 cut(s)	276, 322, 340, 526
CviAII	CATG	3 cut(s)	65, 326, 727
CviQI	GTAC	4 cut(s)	276, 322, 340, 526
DdeI	CTNAG	2 cut(s)	387, 483
DpnI	GATC	3 cut(s)	415, 439, 488
DpnII	GATC	3 cut(s)	413, 437, 486
EaeI	YGGCCR	3 cut(s)	139, 183, 603
EagI	CGGCCG	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	674
EarI	CTCTTC	1 cut(s)	674
EciI	GGCGGA	2 cut(s)	149, 426
EclXI	CGGCCG	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	373
Eco52I	CGGCCG	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	223
FaeI	CATG	3 cut(s)	68, 329, 730
FaiI	YATR	3 cut(s)	66, 327, 728
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	3 cut(s)	64, 325, 726
FauI	CCCGC	4 cut(s)	94, 100, 105, 461
Fnu4HI	GCNGC	4 cut(s)	6, 409, 506, 639
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	4 cut(s)	6, 409, 506, 639
FspBI	CTAG	5 cut(s)	128, 314, 707, 735, 739
GluI	GCNGC	4 cut(s)	6, 409, 506, 639
HaeIII	GGCC	6 cut(s)	141, 185, 225, 423, 605, 638
HapII	CCGG	8 cut(s)	102, 120, 273, 435, 441, 578, 602, 606
HgaI	GACGC	2 cut(s)	561, 578
Hin1II	CATG	3 cut(s)	68, 329, 730
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HinfI	GANTC	1 cut(s)	690
HpaII	CCGG	8 cut(s)	102, 120, 273, 435, 441, 578, 602, 606
HphI	GGTGA	6 cut(s)	37, 109, 160, 424, 487, 567
Hpy166II	GTNNAC	2 cut(s)	526, 535
Hpy188I	TCNGA	2 cut(s)	486, 591
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	526, 535
Hpy99I	CGWCG	2 cut(s)	625, 628
HpyAV	CCTTC	3 cut(s)	61, 163, 265
HpyCH4III	ACNGT	3 cut(s)	232, 367, 659
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 80, 578, 635, 659, 681
HpyF3I	CTNAG	2 cut(s)	387, 483
Hsp92II	CATG	3 cut(s)	68, 329, 730
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	413, 437, 486
LguI	GCTCTTC	1 cut(s)	674
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	2 cut(s)	17, 517
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	5 cut(s)	128, 314, 707, 735, 739
MaeIII	GTNAC	5 cut(s)	43, 475, 546, 566, 573
MalI	GATC	3 cut(s)	415, 439, 488
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	3 cut(s)	413, 437, 486
MboII	GAAGA	2 cut(s)	46, 691
MflI	RGATCY	2 cut(s)	413, 437
MlsI	TGGCCA	2 cut(s)	141, 185
MluI	ACGCGT	1 cut(s)	570
MluNI	TGGCCA	2 cut(s)	141, 185
MmeI	TCCRAC	1 cut(s)	614
Mox20I	TGGCCA	2 cut(s)	141, 185
MscI	TGGCCA	2 cut(s)	141, 185
MseI	TTAA	2 cut(s)	111, 281
Msp20I	TGGCCA	2 cut(s)	141, 185
MspI	CCGG	8 cut(s)	102, 120, 273, 435, 441, 578, 602, 606
MspR9I	CCNGG	1 cut(s)	102
MvnI	CGCG	1 cut(s)	572
MwoI	GCNNNNNNNGC	6 cut(s)	47, 80, 578, 635, 659, 681
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	413, 437, 486
NlaIII	CATG	3 cut(s)	68, 329, 730
NlaIV	GGNNCC	5 cut(s)	84, 277, 439, 449, 582
NmuCI	GTSAC	4 cut(s)	43, 475, 566, 573
PciSI	GCTCTTC	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	1 cut(s)	626
PfeI	GAWTC	1 cut(s)	690
PkrI	GCNGC	4 cut(s)	7, 410, 507, 640
PspN4I	GGNNCC	5 cut(s)	84, 277, 439, 449, 582
PspPI	GGNCC	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	413, 437
RsaI	GTAC	4 cut(s)	277, 323, 341, 527
RsaNI	GTAC	4 cut(s)	276, 322, 340, 526
SapI	GCTCTTC	1 cut(s)	674
SaqAI	TTAA	2 cut(s)	111, 281
SatI	GCNGC	4 cut(s)	6, 409, 506, 639
Sau3AI	GATC	3 cut(s)	413, 437, 486
Sau96I	GGNCC	1 cut(s)	223
ScaI	AGTACT	1 cut(s)	341
ScrFI	CCNGG	1 cut(s)	102
SfaNI	GCATC	1 cut(s)	132
SspMI	CTAG	5 cut(s)	128, 314, 707, 735, 739
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	3 cut(s)	232, 367, 659
TaqI	TCGA	3 cut(s)	371, 464, 671
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	411, 641
TfiI	GAWTC	1 cut(s)	690
Tru1I	TTAA	2 cut(s)	111, 281
Tru9I	TTAA	2 cut(s)	111, 281
TscAI	CASTG	1 cut(s)	664
TseFI	GTSAC	4 cut(s)	43, 475, 566, 573
TseI	GCWGC	2 cut(s)	5, 505
Tsp45I	GTSAC	4 cut(s)	43, 475, 566, 573
TspDTI	ATGAA	1 cut(s)	715
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	664
XspI	CTAG	5 cut(s)	128, 314, 707, 735, 739
ZrmI	AGTACT	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.