Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014289

Physical Location & Seq

Genomic Coordinates Reverse (-)

13586834 .. 13587580

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1174300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCTTCCACACCTTCCTCCTCCCTCCTCCTCACCGCAGCCACCGTCCTCCTCCTCCTCCTCATTTCCCACACCCAAGCCCAAACCGCCCCTGCCCCAAGCCCCGCCGGCCCCCTCAACTTCACCGGCCTCCTCGACAAAAACGGCCAGTACTCCACCTTCATCCGCCTCCTCATCTCAACCCAAGTAGCCAACCAAATCACCAACCAGCTCAACAGCTCCACCGAGGGCCTCACCGTCTTCGCCCCCACCGACAACGCCTTCGACAACCTCAAAGCCGGCACCCTCAACAGCCTCGACACGCAACAGCAAGTCGCCCTCGTCCTCTACCATGTCCTCCCCAAGTACTACACGTTGGCCAGCCTCTTAACTGTGTCAAACCCCGTTAGGACTCAAGCCACCGGACAAGACGGAGGAACTTACGGACTTAACTTCACCGGGTCCGGAAACCAAGTCAACGTTTCGACCGGGATCGTGGAGACCCAGATCAACAATGCACTCAGACAGCAGTTTCCCCTTGCTGTGTACCAAGTGGACAAAGTGCTTTTGCCTTATGACTTGTTTGGTGCCAAGGCACCTGCTTCCGCTCCTCCTCCATCAAAGGCCAATTCGGGCAGCGGCAGCGCTAACGAGACGACAATAAAGCCTGCCTCTTCACCGGATAATTCCGGTGCCGGTTCAGTTTTGAGCAATGTGGGATTCATGGGTTTGGCTCTTGGGTATCTTTTCATGGGAACTTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

249

Amino Acids

25.81

Weight (kDa)

6.03

Isoelectric Point (pI)

24.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	50 - 184	5.5e-23	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03870 AT5G44130
fragaria_vesca	FvH4_1g03420
malus_domestica	MD15G1174300.v1.1
prunus_persica	Prupe.7G241800_v2.0.a1
pyrus_communis	pycom15g15590
rosa_chinensis	RchiOBHm_Chr2g0088651
rosa_laevigata	RLG00000015972
rosa_multiflora	Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii	Rroxscaffold_2G00152430
rosa_rugosa	Rorug01G0485600
rosa_samantha	Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana	Rw2G003330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	586
Acc36I	ACCTGC	1 cut(s)	586
AccB1I	GGYRCC	4 cut(s)	281, 566, 574, 671
AccBSI	CCGCTC	1 cut(s)	587
AccIII	TCCGGA	1 cut(s)	443
AciI	CCGC	6 cut(s)	36, 87, 105, 166, 585, 618
AclI	AACGTT	1 cut(s)	459
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	2 cut(s)	145, 357
AfaI	GTAC	3 cut(s)	152, 347, 527
AfeI	AGCGCT	1 cut(s)	625
AflIII	ACRYGT	1 cut(s)	351
AluBI	AGCT	2 cut(s)	211, 219
AluI	AGCT	2 cut(s)	211, 219
Alw26I	GTCTC	2 cut(s)	473, 626
AlwI	GGATC	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	443
Aor51HI	AGCGCT	1 cut(s)	625
AoxI	GGCC	6 cut(s)	109, 127, 145, 229, 357, 603
ApeKI	GCWGC	3 cut(s)	38, 615, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	3 cut(s)	110, 229, 441
AsuC2I	CCSGG	2 cut(s)	439, 469
AsuHPI	GGTGA	6 cut(s)	25, 115, 193, 226, 427, 648
AvaII	GGWCC	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	359
BanI	GGYRCC	4 cut(s)	281, 566, 574, 671
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbsI	GAAGAC	1 cut(s)	232
BbvI	GCAGC	3 cut(s)	50, 627, 633
BccI	CCATC	1 cut(s)	604
BceAI	ACGGC	1 cut(s)	160
BcnI	CCSGG	2 cut(s)	439, 469
BcoDI	GTCTC	2 cut(s)	473, 626
BfoI	RGCGCY	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	586
BglI	GCCNNNNNGGC	1 cut(s)	108
BisI	GCNGC	4 cut(s)	39, 616, 619, 622
BlsI	GCNGC	4 cut(s)	40, 617, 620, 623
BmcAI	AGTACT	2 cut(s)	152, 347
Bme1390I	CCNGG	2 cut(s)	439, 469
Bme18I	GGWCC	1 cut(s)	441
BmgT120I	GGNCC	3 cut(s)	110, 229, 441
BmiI	GGNNCC	6 cut(s)	112, 283, 442, 568, 576, 673
BmrFI	CCNGG	2 cut(s)	439, 469
BpiI	GAAGAC	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	439, 469
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	2 cut(s)	225, 570
BsaWI	WCCGGW	4 cut(s)	401, 443, 658, 668
Bse118I	RCCGGY	4 cut(s)	107, 125, 278, 674
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	697
BseAI	TCCGGA	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	225, 570
BseGI	GGATG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	1 cut(s)	514
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	50, 627, 633
Bsh1285I	CGRYCG	1 cut(s)	468
BshFI	GGCC	6 cut(s)	111, 129, 147, 231, 359, 605
BshNI	GGYRCC	4 cut(s)	281, 566, 574, 671
BsiEI	CGRYCG	1 cut(s)	468
BsmAI	GTCTC	2 cut(s)	473, 626
BsmBI	CGTCTC	1 cut(s)	626
BsnI	GGCC	6 cut(s)	111, 129, 147, 231, 359, 605
Bso31I	GGTCTC	1 cut(s)	473
Bsp13I	TCCGGA	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	471, 486
BspACI	CCGC	6 cut(s)	36, 87, 105, 166, 585, 618
BspANI	GGCC	6 cut(s)	111, 129, 147, 231, 359, 605
BspCNI	CTCAG	1 cut(s)	513
BspEI	TCCGGA	1 cut(s)	443
BspLI	GGNNCC	6 cut(s)	112, 283, 442, 568, 576, 673
BspMI	ACCTGC	1 cut(s)	586
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	4 cut(s)	281, 566, 574, 671
BspTNI	GGTCTC	1 cut(s)	473
BsrBI	CCGCTC	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	697
BsrFI	RCCGGY	4 cut(s)	107, 125, 278, 674
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	4 cut(s)	107, 125, 278, 674
BssECI	CCNNGG	2 cut(s)	225, 570
BssMI	GATC	2 cut(s)	471, 486
BssT1I	CCWWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	46, 238, 373
Bst6I	CTCTTC	1 cut(s)	658
BstC8I	GCNNGC	4 cut(s)	109, 280, 361, 648
BstDEI	CTNAG	1 cut(s)	500
BstF5I	GGATG	1 cut(s)	162
BstH2I	RGCGCY	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	2 cut(s)	474, 489
BstMAI	GTCTC	2 cut(s)	473, 626
BstMBI	GATC	2 cut(s)	471, 486
BstMCI	CGRYCG	1 cut(s)	468
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 108, 621
BstSCI	CCNGG	2 cut(s)	437, 467
BstV1I	GCAGC	3 cut(s)	50, 627, 633
BstV2I	GAAGAC	1 cut(s)	232
BsuRI	GGCC	6 cut(s)	111, 129, 147, 231, 359, 605
BtsCI	GGATG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	4 cut(s)	109, 280, 361, 648
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	4 cut(s)	107, 125, 278, 674
Cfr13I	GGNCC	3 cut(s)	110, 229, 441
Csp6I	GTAC	3 cut(s)	151, 346, 526
CviAII	CATG	3 cut(s)	332, 703, 730
CviQI	GTAC	3 cut(s)	151, 346, 526
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	2 cut(s)	473, 488
DpnII	GATC	2 cut(s)	471, 486
EaeI	YGGCCR	2 cut(s)	145, 357
Eam1104I	CTCTTC	1 cut(s)	658
EarI	CTCTTC	1 cut(s)	658
EciI	GGCGGA	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	441
Eco47III	AGCGCT	1 cut(s)	625
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	3 cut(s)	335, 706, 733
FaiI	YATR	4 cut(s)	333, 555, 704, 731
FatI	CATG	3 cut(s)	331, 702, 729
FauI	CCCGC	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	39, 616, 619, 622
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	4 cut(s)	39, 616, 619, 622
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	4 cut(s)	39, 616, 619, 622
HaeII	RGCGCY	1 cut(s)	627
HaeIII	GGCC	6 cut(s)	111, 129, 147, 231, 359, 605
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	3 cut(s)	335, 706, 733
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	2 cut(s)	391, 699
HphI	GGTGA	6 cut(s)	25, 115, 193, 226, 427, 648
Hpy166II	GTNNAC	3 cut(s)	457, 526, 535
Hpy188I	TCNGA	1 cut(s)	503
Hpy188III	TCNNGA	1 cut(s)	444
Hpy8I	GTNNAC	3 cut(s)	457, 526, 535
HpyAV	CCTTC	3 cut(s)	24, 169, 271
HpyCH4III	ACNGT	3 cut(s)	46, 238, 373
HpyCH4IV	ACGT	2 cut(s)	353, 459
HpyCH4V	TGCA	1 cut(s)	497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 108, 621
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	2 cut(s)	353, 459
Hsp92II	CATG	3 cut(s)	335, 706, 733
HspAI	GCGC	1 cut(s)	624
Kpn2I	TCCGGA	1 cut(s)	443
KroI	GCCGGC	2 cut(s)	107, 278
KroNI	GCCGGC	2 cut(s)	109, 280
Kzo9I	GATC	2 cut(s)	471, 486
LmnI	GCTCC	2 cut(s)	224, 592
Lsp1109I	GCAGC	3 cut(s)	50, 627, 633
MaeII	ACGT	2 cut(s)	353, 459
MalI	GATC	2 cut(s)	473, 488
MbiI	CCGCTC	1 cut(s)	587
MboI	GATC	2 cut(s)	471, 486
MboII	GAAGA	2 cut(s)	232, 645
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	2 cut(s)	607, 664
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	385
Mox20I	TGGCCA	1 cut(s)	359
MroI	TCCGGA	1 cut(s)	443
MroNI	GCCGGC	2 cut(s)	107, 278
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	2 cut(s)	368, 429
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	618
MspR9I	CCNGG	2 cut(s)	439, 469
MwoI	GCNNNNNNNGC	3 cut(s)	86, 108, 621
NaeI	GCCGGC	2 cut(s)	109, 280
NciI	CCSGG	2 cut(s)	439, 469
NdeII	GATC	2 cut(s)	471, 486
NgoMIV	GCCGGC	2 cut(s)	107, 278
NlaIII	CATG	3 cut(s)	335, 706, 733
NlaIV	GGNNCC	6 cut(s)	112, 283, 442, 568, 576, 673
PaqCI	CACCTGC	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdiI	GCCGGC	2 cut(s)	109, 280
PfeI	GAWTC	1 cut(s)	699
PkrI	GCNGC	4 cut(s)	40, 617, 620, 623
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp1406I	AACGTT	1 cut(s)	459
PspN4I	GGNNCC	6 cut(s)	112, 283, 442, 568, 576, 673
PspPI	GGNCC	3 cut(s)	110, 229, 441
RsaI	GTAC	3 cut(s)	152, 347, 527
RsaNI	GTAC	3 cut(s)	151, 346, 526
SaqAI	TTAA	2 cut(s)	368, 429
SatI	GCNGC	4 cut(s)	39, 616, 619, 622
Sau3AI	GATC	2 cut(s)	471, 486
Sau96I	GGNCC	3 cut(s)	110, 229, 441
ScaI	AGTACT	2 cut(s)	152, 347
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	439, 469
SetI	ASST	8 cut(s)	16, 161, 213, 221, 273, 356, 462, 580
SinI	GGWCC	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	393
SmoI	CTYRAG	1 cut(s)	393
Sse9I	AATT	2 cut(s)	607, 664
SsiI	CCGC	6 cut(s)	36, 87, 105, 166, 585, 618
StyD4I	CCNGG	2 cut(s)	437, 467
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	46, 238, 373
TaiI	ACGT	2 cut(s)	356, 462
TaqI	TCGA	4 cut(s)	135, 264, 297, 464
TasI	AATT	2 cut(s)	607, 664
TatI	WGTACW	2 cut(s)	150, 345
TauI	GCSGC	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	699
Tru1I	TTAA	2 cut(s)	368, 429
Tru9I	TTAA	2 cut(s)	368, 429
TseI	GCWGC	3 cut(s)	38, 615, 621
TspDTI	ATGAA	3 cut(s)	151, 691, 718
TspGWI	ACGGA	2 cut(s)	426, 438
VpaK11BI	GGWCC	1 cut(s)	441
ZrmI	AGTACT	2 cut(s)	152, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.