Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014289

Physical Location & Seq

Genomic Coordinates Reverse (-)

10879321 .. 10880157

Gene Structure 837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCCAACGAAGGCTCTCCCACTCACACCCGATCCCATACCTTATAAGCTTATCCCACTACACTACACAGCACCCCATATCCTCACACCTATCATGGCTTCCACACCTTCCTCCTCCCTCCTCCTCACCGCAGCCACCGTCCTCCTCCTCCTCATTTCCCACACCCAAGCCCAAACCGCCCCTGCCCCAAGCCCCGCCGGCCCCCTCAACTTAACCGGCCTCCTCGACAAAAACGGCCAGTACTCCACCTTCATCCGCCTCCTCATCTCAACCCAAGTAGCCAACCAAATCACCAACCAGCTCAACAGCTCCACCGAGGGCCTCACCGTCTTCGCCCCCACCGACAACGCCTTCGACAACCTCAAAGCCGGCACCCTCAACAACCTCGACACGCAACAGCAAGTCTCCCTCGTCCTCTACCATGTCCTCCCCAAATACTACAAGTTGGCCAGCCTTTTAACGGTGTCAAACCCCGTTAGGACTCAAGCCACCGGACAAGACGGAGGAGCTTACGGACTTAACTTCACCGGGTCCGGAAACCAGGTCAACGTTTCGACCGGGATCGTGGAGACTCAGATCAACAATGCACTCAGACAGCAGTTTCCCCTTGCTGTGTACCAAGTGGACAAAGTGCTTTTGCCTTATGACTTGTTTGGTGCCAAGGCACCTGCTTCCGCTCCTCCACCATCAAAGGCCCATTCGGGCAGCGGCAGCGCTAACGAGACGACAATAAAGCCTGCCTCTTCACCGGATAATTCGGGTGCCGGTTCAATTGTGAGCAATGTGGGATTCATGGGTTTGGCTCTTGGGTATCTTTTCATGGGAACTTTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

279

Amino Acids

29.17

Weight (kDa)

7.92

Isoelectric Point (pI)

28.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	80 - 214	1.8e-22	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03870 AT5G44130
fragaria_vesca	FvH4_1g03420
malus_domestica	MD15G1174300.v1.1
prunus_persica	Prupe.7G241800_v2.0.a1
pyrus_communis	pycom15g15590
rosa_chinensis	RchiOBHm_Chr2g0088651
rosa_laevigata	RLG00000015972
rosa_multiflora	Rmu_sc0006835.1_g000014 Rmu_sc0015442.1_g000011
rosa_roxburghii	Rroxscaffold_2G00152430
rosa_rugosa	Rorug01G0485600
rosa_samantha	Rh2AG041100 Rh2BG039800 Rh2CG040600 Rh2DG040200
rosa_wichuraiana	Rw2G003330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	45
AarI	CACCTGC	1 cut(s)	676
Acc36I	ACCTGC	1 cut(s)	676
AccB1I	GGYRCC	4 cut(s)	371, 656, 664, 761
AccBSI	CCGCTC	1 cut(s)	677
AccIII	TCCGGA	1 cut(s)	533
AciI	CCGC	6 cut(s)	129, 177, 195, 256, 675, 708
AclI	AACGTT	1 cut(s)	549
AclWI	GGATC	2 cut(s)	26, 569
AcoI	YGGCCR	2 cut(s)	235, 447
AfaI	GTAC	2 cut(s)	242, 617
AfeI	AGCGCT	1 cut(s)	715
AfiI	CCNNNNNNNGG	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	771
AjnI	CCWGG	1 cut(s)	540
AluBI	AGCT	4 cut(s)	49, 301, 309, 509
AluI	AGCT	4 cut(s)	49, 301, 309, 509
Alw26I	GTCTC	3 cut(s)	409, 563, 716
AlwI	GGATC	2 cut(s)	26, 569
Aor13HI	TCCGGA	1 cut(s)	533
Aor51HI	AGCGCT	1 cut(s)	715
AoxI	GGCC	6 cut(s)	199, 217, 235, 319, 447, 693
ApeKI	GCWGC	3 cut(s)	131, 705, 711
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	4 cut(s)	200, 319, 531, 694
AsuC2I	CCSGG	2 cut(s)	529, 559
AsuHPI	GGTGA	5 cut(s)	118, 283, 316, 517, 738
AvaII	GGWCC	1 cut(s)	531
BalI	TGGCCA	1 cut(s)	449
BanI	GGYRCC	4 cut(s)	371, 656, 664, 761
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BbsI	GAAGAC	1 cut(s)	322
BbvI	GCAGC	3 cut(s)	143, 717, 723
BccI	CCATC	1 cut(s)	694
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	542
BcnI	CCSGG	2 cut(s)	529, 559
BcoDI	GTCTC	3 cut(s)	409, 563, 716
BfoI	RGCGCY	1 cut(s)	717
BfuAI	ACCTGC	1 cut(s)	676
BglI	GCCNNNNNGGC	1 cut(s)	198
BisI	GCNGC	4 cut(s)	132, 706, 709, 712
BlsI	GCNGC	4 cut(s)	133, 707, 710, 713
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	3 cut(s)	529, 542, 559
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	4 cut(s)	200, 319, 531, 694
BmiI	GGNNCC	6 cut(s)	202, 373, 532, 658, 666, 763
BmrFI	CCNGG	3 cut(s)	529, 542, 559
BpiI	GAAGAC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	2 cut(s)	529, 559
BsaJI	CCNNGG	2 cut(s)	315, 660
BsaWI	WCCGGW	3 cut(s)	491, 533, 748
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse118I	RCCGGY	4 cut(s)	197, 215, 368, 764
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	787
BseAI	TCCGGA	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	542
BseDI	CCNNGG	2 cut(s)	315, 660
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMI	GCAATG	1 cut(s)	787
BseMII	CTCAG	2 cut(s)	587, 604
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	3 cut(s)	143, 717, 723
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	6 cut(s)	201, 219, 237, 321, 449, 695
BshNI	GGYRCC	4 cut(s)	371, 656, 664, 761
BsiEI	CGRYCG	1 cut(s)	558
BsiSI	CCGG	9 cut(s)	198, 216, 369, 492, 528, 534, 558, 749, 765
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmAI	GTCTC	3 cut(s)	409, 563, 716
BsmBI	CGTCTC	1 cut(s)	716
BsnI	GGCC	6 cut(s)	201, 219, 237, 321, 449, 695
Bsp13I	TCCGGA	1 cut(s)	533
Bsp143I	GATC	3 cut(s)	31, 561, 576
BspACI	CCGC	6 cut(s)	129, 177, 195, 256, 675, 708
BspANI	GGCC	6 cut(s)	201, 219, 237, 321, 449, 695
BspCNI	CTCAG	2 cut(s)	586, 603
BspEI	TCCGGA	1 cut(s)	533
BspLI	GGNNCC	6 cut(s)	202, 373, 532, 658, 666, 763
BspMI	ACCTGC	1 cut(s)	676
BspPI	GGATC	2 cut(s)	26, 569
BspT107I	GGYRCC	4 cut(s)	371, 656, 664, 761
BsrBI	CCGCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	787
BsrFI	RCCGGY	4 cut(s)	197, 215, 368, 764
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	4 cut(s)	197, 215, 368, 764
BssECI	CCNNGG	2 cut(s)	315, 660
BssMI	GATC	3 cut(s)	31, 561, 576
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	542
Bst4CI	ACNGT	3 cut(s)	139, 328, 463
Bst6I	CTCTTC	1 cut(s)	748
BstC8I	GCNNGC	4 cut(s)	199, 370, 451, 738
BstDEI	CTNAG	2 cut(s)	573, 590
BstF5I	GGATG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	717
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	3 cut(s)	34, 564, 579
BstMAI	GTCTC	3 cut(s)	409, 563, 716
BstMBI	GATC	3 cut(s)	31, 561, 576
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 198, 711
BstNI	CCWGG	1 cut(s)	542
BstSCI	CCNGG	3 cut(s)	527, 540, 557
BstV1I	GCAGC	3 cut(s)	143, 717, 723
BstV2I	GAAGAC	1 cut(s)	322
BsuRI	GGCC	6 cut(s)	201, 219, 237, 321, 449, 695
BtsCI	GGATG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	676
Cac8I	GCNNGC	4 cut(s)	199, 370, 451, 738
CfoI	GCGC	1 cut(s)	716
Cfr10I	RCCGGY	4 cut(s)	197, 215, 368, 764
Cfr13I	GGNCC	4 cut(s)	200, 319, 531, 694
CsiI	ACCWGGT	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	241, 616
CviAII	CATG	4 cut(s)	94, 422, 793, 820
CviQI	GTAC	2 cut(s)	241, 616
DdeI	CTNAG	2 cut(s)	573, 590
DpnI	GATC	3 cut(s)	33, 563, 578
DpnII	GATC	3 cut(s)	31, 561, 576
EaeI	YGGCCR	2 cut(s)	235, 447
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
EciI	GGCGGA	1 cut(s)	245
Eco130I	CCWWGG	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	531
Eco47III	AGCGCT	1 cut(s)	715
EcoO109I	RGGNCCY	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	716
FaeI	CATG	4 cut(s)	97, 425, 796, 823
FaiI	YATR	8 cut(s)	38, 45, 78, 95, 423, 645, 794, 821
FatI	CATG	4 cut(s)	93, 421, 792, 819
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	132, 706, 709, 712
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	132, 706, 709, 712
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	4 cut(s)	132, 706, 709, 712
HaeII	RGCGCY	1 cut(s)	717
HaeIII	GGCC	6 cut(s)	201, 219, 237, 321, 449, 695
HapII	CCGG	9 cut(s)	198, 216, 369, 492, 528, 534, 558, 749, 765
HhaI	GCGC	1 cut(s)	716
Hin1II	CATG	4 cut(s)	97, 425, 796, 823
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	481, 571, 789
HpaII	CCGG	9 cut(s)	198, 216, 369, 492, 528, 534, 558, 749, 765
HphI	GGTGA	5 cut(s)	118, 283, 316, 517, 738
Hpy166II	GTNNAC	3 cut(s)	547, 616, 625
Hpy188I	TCNGA	2 cut(s)	576, 593
Hpy188III	TCNNGA	1 cut(s)	534
Hpy8I	GTNNAC	3 cut(s)	547, 616, 625
HpyAV	CCTTC	4 cut(s)	4, 117, 259, 361
HpyCH4III	ACNGT	3 cut(s)	139, 328, 463
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	1 cut(s)	587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 198, 711
HpyF3I	CTNAG	2 cut(s)	573, 590
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	4 cut(s)	97, 425, 796, 823
HspAI	GCGC	1 cut(s)	714
Kpn2I	TCCGGA	1 cut(s)	533
KroI	GCCGGC	2 cut(s)	197, 368
KroNI	GCCGGC	2 cut(s)	199, 370
Kzo9I	GATC	3 cut(s)	31, 561, 576
LmnI	GCTCC	3 cut(s)	314, 506, 682
Lsp1109I	GCAGC	3 cut(s)	143, 717, 723
MabI	ACCWGGT	1 cut(s)	540
MaeII	ACGT	1 cut(s)	549
MalI	GATC	3 cut(s)	33, 563, 578
MbiI	CCGCTC	1 cut(s)	677
MboI	GATC	3 cut(s)	31, 561, 576
MboII	GAAGA	2 cut(s)	322, 735
MfeI	CAATTG	1 cut(s)	771
MlsI	TGGCCA	1 cut(s)	449
MluCI	AATT	2 cut(s)	754, 771
MluNI	TGGCCA	1 cut(s)	449
MlyI	GAGTC	2 cut(s)	475, 565
Mox20I	TGGCCA	1 cut(s)	449
MroI	TCCGGA	1 cut(s)	533
MroNI	GCCGGC	2 cut(s)	197, 368
MscI	TGGCCA	1 cut(s)	449
MseI	TTAA	3 cut(s)	212, 458, 519
Msp20I	TGGCCA	1 cut(s)	449
MspA1I	CMGCKG	1 cut(s)	708
MspI	CCGG	9 cut(s)	198, 216, 369, 492, 528, 534, 558, 749, 765
MspR9I	CCNGG	3 cut(s)	529, 542, 559
MunI	CAATTG	1 cut(s)	771
MvaI	CCWGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	3 cut(s)	176, 198, 711
NaeI	GCCGGC	2 cut(s)	199, 370
NciI	CCSGG	2 cut(s)	529, 559
NdeII	GATC	3 cut(s)	31, 561, 576
NgoMIV	GCCGGC	2 cut(s)	197, 368
NlaIII	CATG	4 cut(s)	97, 425, 796, 823
NlaIV	GGNNCC	6 cut(s)	202, 373, 532, 658, 666, 763
PaqCI	CACCTGC	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	339
PdiI	GCCGGC	2 cut(s)	199, 370
PfeI	GAWTC	1 cut(s)	789
PkrI	GCNGC	4 cut(s)	133, 707, 710, 713
PleI	GAGTC	2 cut(s)	475, 565
PpsI	GAGTC	2 cut(s)	475, 565
PsiI	TTATAA	1 cut(s)	45
Psp1406I	AACGTT	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	540
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	6 cut(s)	202, 373, 532, 658, 666, 763
PspPI	GGNCC	4 cut(s)	200, 319, 531, 694
RsaI	GTAC	2 cut(s)	242, 617
RsaNI	GTAC	2 cut(s)	241, 616
SaqAI	TTAA	3 cut(s)	212, 458, 519
SatI	GCNGC	4 cut(s)	132, 706, 709, 712
Sau3AI	GATC	3 cut(s)	31, 561, 576
Sau96I	GGNCC	4 cut(s)	200, 319, 531, 694
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	2 cut(s)	475, 565
ScrFI	CCNGG	3 cut(s)	529, 542, 559
SexAI	ACCWGGT	1 cut(s)	540
SinI	GGWCC	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	2 cut(s)	754, 771
SsiI	CCGC	6 cut(s)	129, 177, 195, 256, 675, 708
StyD4I	CCNGG	3 cut(s)	527, 540, 557
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	139, 328, 463
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	4 cut(s)	225, 354, 387, 554
TasI	AATT	2 cut(s)	754, 771
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	1 cut(s)	711
TfiI	GAWTC	1 cut(s)	789
Tru1I	TTAA	3 cut(s)	212, 458, 519
Tru9I	TTAA	3 cut(s)	212, 458, 519
TseI	GCWGC	3 cut(s)	131, 705, 711
TspDTI	ATGAA	3 cut(s)	241, 781, 808
TspGWI	ACGGA	2 cut(s)	516, 528
VpaK11BI	GGWCC	1 cut(s)	531
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.