Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011816

Physical Location & Seq

Genomic Coordinates Reverse (-)

1011151 .. 1013365

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G03950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAACATCTTCACTAAGAAACCTAATCCCAGAGAAGTGCTTCGGGAGAGTAAGAGAGAGATGACACAAGCTACCAGAGGAATCGAAAAGGAAATCGGATCTCTGCAATCAGAAGAAAAAAAGCTCGTTCTCGAGATCAAAAGAACTGCTAAATCAGGCAATGAGGGAGCGACTAAGATTCTTGCTCGGCAATTGATCCGTCTAAGGCAGCAAATAGCTAACTTACAAGGTAGCCGAGCTCAAATGCGAGGCATTGCTACTCATACACAGGCTATGCATGCACACACTTCAGTTGCTGCTGGAATGCAAGGTGCCACTAAGGCAATGGCAGCTATGAGCAAGAATATGGATCCAGCAAAACAGGCTAAGGTTATGAGAGAATTTCAAAAGCAGTCTGCACAAATGGACATGACTACTGAGATGATGTCAGATTCCATAGATGATGCTTTAGACAATGACGAAGCTGAAGACGAAACAGAGGATTTGACAAACCAGGTTCTTGATGAAATCGGCATTGATATCGCCTCGCAGTTATCATCTGCTCCAAAAGGGAAAATTGGTGGGAAGAAAGCAGAGGATGTTGGCAGTTCTGGAATCGATGAACTGGAGAAGCGGTTGGCGGCGCTTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

210

Amino Acids

23.03

Weight (kDa)

6.87

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	16 - 185	1.7e-46	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03950
fragaria_vesca	FvH4_2g21140 FvH4_2g21140
malus_domestica	MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica	Prupe.8G220500_v2.0.a1
pyrus_communis	pycom10g15650
rosa_chinensis	RchiOBHm_Chr6g0287631
rosa_laevigata	RLG00000012478
rosa_multiflora	Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii	Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa	Rorug06G0190300 Rorug06G0190400
rosa_samantha	Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana	Rw6G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AciI	CCGC	2 cut(s)	613, 620
AclWI	GGATC	4 cut(s)	106, 190, 344, 357
AcsI	RAATTY	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	273, 486
AgsI	TTSAA	1 cut(s)	386
AjnI	CCWGG	1 cut(s)	492
AluBI	AGCT	6 cut(s)	71, 124, 218, 239, 332, 464
AluI	AGCT	6 cut(s)	71, 124, 218, 239, 332, 464
Alw21I	GWGCWC	1 cut(s)	241
AlwI	GGATC	4 cut(s)	106, 190, 344, 357
AlwNI	CAGNNNCTG	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	131
ApeKI	GCWGC	3 cut(s)	208, 296, 329
ApoI	RAATTY	1 cut(s)	380
Asp700I	GAANNNNTTC	2 cut(s)	8, 39
AspLEI	GCGC	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	349
BanI	GGYRCC	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	220, 283, 341
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	1 cut(s)	494
BfoI	RGCGCY	1 cut(s)	626
BglI	GCCNNNNNGGC	1 cut(s)	320
BisI	GCNGC	4 cut(s)	209, 297, 330, 621
BlsI	GCNGC	4 cut(s)	210, 298, 331, 622
Bme1390I	CCNGG	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	313, 351
BmrFI	CCNGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	433
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	366
Bsa29I	ATCGAT	1 cut(s)	597
BsaXI	ACNNNNNCTCC	2 cut(s)	599, 629
Bse1I	ACTGG	1 cut(s)	609
Bse3DI	GCAATG	3 cut(s)	166, 252, 330
BseBI	CCWGG	1 cut(s)	494
BseCI	ATCGAT	1 cut(s)	597
BseGI	GGATG	1 cut(s)	583
BseMI	GCAATG	3 cut(s)	166, 252, 330
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	609
BseXI	GCAGC	3 cut(s)	220, 283, 341
BsgI	GTGCAG	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	597
BsiHKAI	GWGCWC	1 cut(s)	241
BsiHKCI	CYCGRG	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	4 cut(s)	98, 135, 195, 349
BspACI	CCGC	2 cut(s)	613, 620
BspCNI	CTCAG	1 cut(s)	409
BspDI	ATCGAT	1 cut(s)	597
BspLI	GGNNCC	2 cut(s)	313, 351
BspPI	GGATC	4 cut(s)	106, 190, 344, 357
BspT107I	GGYRCC	1 cut(s)	311
BsrDI	GCAATG	3 cut(s)	166, 252, 330
BsrI	ACTGG	1 cut(s)	609
BssMI	GATC	4 cut(s)	98, 135, 195, 349
Bst2UI	CCWGG	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	7 cut(s)	15, 174, 203, 318, 366, 417, 626
BstF5I	GGATG	1 cut(s)	583
BstH2I	RGCGCY	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	4 cut(s)	101, 138, 198, 352
BstMBI	GATC	4 cut(s)	98, 135, 195, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 320, 329, 362
BstNI	CCWGG	1 cut(s)	494
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	492
BstV1I	GCAGC	3 cut(s)	220, 283, 341
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	98, 349
BstYI	RGATCY	2 cut(s)	98, 349
Bsu15I	ATCGAT	1 cut(s)	597
BsuTUI	ATCGAT	1 cut(s)	597
BtsCI	GGATG	1 cut(s)	583
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	625
ClaI	ATCGAT	1 cut(s)	597
CsiI	ACCWGGT	1 cut(s)	492
CviAII	CATG	2 cut(s)	278, 409
CviJI	RGCY	9 cut(s)	71, 124, 218, 234, 239, 272, 332, 365, 464
CviKI_1	RGCY	9 cut(s)	71, 124, 218, 234, 239, 272, 332, 365, 464
DdeI	CTNAG	7 cut(s)	15, 174, 203, 318, 366, 417, 626
DpnI	GATC	4 cut(s)	100, 137, 197, 351
DpnII	GATC	4 cut(s)	98, 135, 195, 349
Ecl136II	GAGCTC	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	239
Eco57I	CTGAAG	2 cut(s)	273, 486
Eco88I	CYCGRG	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	492
EcoRV	GATATC	1 cut(s)	520
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	2 cut(s)	281, 412
FaiI	YATR	8 cut(s)	264, 275, 279, 335, 347, 374, 410, 437
FatI	CATG	2 cut(s)	277, 408
Fnu4HI	GCNGC	4 cut(s)	209, 297, 330, 621
FokI	GGATG	1 cut(s)	590
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	209, 297, 330, 621
GlaI	GCGC	1 cut(s)	624
GluI	GCNGC	4 cut(s)	209, 297, 330, 621
GsuI	CTGGAG	1 cut(s)	626
HaeII	RGCGCY	1 cut(s)	626
HhaI	GCGC	1 cut(s)	625
Hin1II	CATG	2 cut(s)	281, 412
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HinfI	GANTC	4 cut(s)	81, 178, 431, 594
Hpy188I	TCNGA	3 cut(s)	98, 112, 430
Hpy188III	TCNNGA	5 cut(s)	44, 131, 133, 500, 591
HpyCH4V	TGCA	5 cut(s)	106, 277, 281, 307, 398
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 320, 329, 362
HpyF3I	CTNAG	7 cut(s)	15, 174, 203, 318, 366, 417, 626
Hsp92II	CATG	2 cut(s)	281, 412
HspAI	GCGC	1 cut(s)	623
Kzo9I	GATC	4 cut(s)	98, 135, 195, 349
LmnI	GCTCC	2 cut(s)	167, 547
Lsp1109I	GCAGC	3 cut(s)	220, 283, 341
LweI	GCATC	1 cut(s)	433
MabI	ACCWGGT	1 cut(s)	492
MalI	GATC	4 cut(s)	100, 137, 197, 351
MboI	GATC	4 cut(s)	98, 135, 195, 349
MboII	GAAGA	3 cut(s)	125, 479, 577
MfeI	CAATTG	1 cut(s)	191
MflI	RGATCY	2 cut(s)	98, 349
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	3 cut(s)	191, 380, 555
MnlI	CCTC	6 cut(s)	71, 157, 242, 472, 535, 568
Mph1103I	ATGCAT	1 cut(s)	279
MroXI	GAANNNNTTC	2 cut(s)	8, 39
MspR9I	CCNGG	1 cut(s)	494
MunI	CAATTG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	494
MwoI	GCNNNNNNNGC	4 cut(s)	278, 320, 329, 362
NdeII	GATC	4 cut(s)	98, 135, 195, 349
NlaIII	CATG	2 cut(s)	281, 412
NlaIV	GGNNCC	2 cut(s)	313, 351
NmeAIII	GCCGAG	2 cut(s)	166, 260
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	281
PaeR7I	CTCGAG	1 cut(s)	131
PctI	GAATGC	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	8, 39
PfeI	GAWTC	4 cut(s)	81, 178, 431, 594
PkrI	GCNGC	4 cut(s)	210, 298, 331, 622
Psp124BI	GAGCTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	492
PspGI	CCWGG	1 cut(s)	492
PspN4I	GGNNCC	2 cut(s)	313, 351
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	98, 349
SacI	GAGCTC	1 cut(s)	241
SatI	GCNGC	4 cut(s)	209, 297, 330, 621
Sau3AI	GATC	4 cut(s)	98, 135, 195, 349
ScrFI	CCNGG	1 cut(s)	494
SduI	GDGCHC	1 cut(s)	241
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	433
Sfr274I	CTCGAG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	3 cut(s)	191, 380, 555
SsiI	CCGC	2 cut(s)	613, 620
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	492
TaqI	TCGA	3 cut(s)	84, 132, 597
TasI	AATT	3 cut(s)	191, 380, 555
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	4 cut(s)	81, 178, 431, 594
TseI	GCWGC	3 cut(s)	208, 296, 329
TspDTI	ATGAA	3 cut(s)	17, 519, 615
TspGWI	ACGGA	1 cut(s)	188
XapI	RAATTY	1 cut(s)	380
XceI	RCATGY	1 cut(s)	281
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XhoI	CTCGAG	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	8, 39
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.