MD05G1193900.v1.1

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011816
Physical Location & Seq
Reverse (-)
32171633 .. 32174934
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1193900.v1.1.491

Sequence Viewer

Length: 636 bp
ATGAACATCTTCAGTAAGAAACCCACCGCCAAAGAGGCTCTTCGGGAGAGCAAGAGAGAAATGACTCATGCTACTAGAGGGATAGAGAAGGAAATCGGAGCATTGCAGTTAGAAGAAAAGAAGCTTGTCGCTGAGATAAAGAGAACTGCTAAAACTGGAAATGAGGGAGCAACTAAAATACTAGCCAGGCAGCTAGTCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTCGAGCTCAAGTGAGAGGAATTGCAACTCATACGCAGGCAATGCATGCTCAGTCCTCGGTTGCTGTTGGCATGAAAGGTGCTAGTAATGCAATGGCAGCTGTGAATAAGCAAATGGCTCCTGCAAAGCAAGCAAAGGTGATACGTGAGTTTCAGAAGCAATCTGCGCAAATGGATATGACTACTGAAATGATGTCCGACGCCATAGATGATGCCGTGGATAATGATGATGCGGAAGAGGAAACTGATGAGCTGACAAACCAGGTGCTCGATGAAATTGGCGTTGATGTCGCCTCACAGCTATCAGCAGCTCCCAGAGGAAAAATTGCATCAAAGAACGCTGCGGGTGTTAGCAGTTCCAGCGTTGATCTCGAGAAAAGATTGGCAGCTCTTAGAAATCCATGA

Protein Analysis

212

Amino Acids

22.78

Weight (kDa)

9.1

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 16 - 185 9.4e-40 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03950
fragaria_vesca FvH4_2g21140 FvH4_2g21140
malus_domestica MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica Prupe.8G220500_v2.0.a1
pyrus_communis pycom10g15650
rosa_chinensis RchiOBHm_Chr6g0287631
rosa_laevigata RLG00000012478
rosa_multiflora Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa Rorug06G0190300 Rorug06G0190400
rosa_samantha Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana Rw6G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 399
AciI CCGC 3 cut(s) 27, 464, 575
AcyI GRCGYC 1 cut(s) 432
AjnI CCWGG 2 cut(s) 185, 492
AluBI AGCT 9 cut(s) 124, 193, 218, 239, 332, 484, 532, 542, 620
AluI AGCT 9 cut(s) 124, 193, 218, 239, 332, 484, 532, 542, 620
Alw21I GWGCWC 2 cut(s) 241, 501
Ama87I CYCGRG 1 cut(s) 602
ApeKI GCWGC 5 cut(s) 190, 329, 539, 572, 617
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 400
AsuHPI GGTGA 1 cut(s) 382
AvaI CYCGRG 1 cut(s) 602
BaeI ACNNNNGTAYC 2 cut(s) 365, 398
BanII GRGCYC 1 cut(s) 241
Bbv12I GWGCWC 2 cut(s) 241, 501
BbvI GCAGC 5 cut(s) 202, 341, 551, 559, 629
BceAI ACGGC 1 cut(s) 431
BciT130I CCWGG 2 cut(s) 187, 494
BfaI CTAG 4 cut(s) 75, 182, 194, 315
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 5 cut(s) 191, 330, 540, 573, 618
BlsI GCNGC 5 cut(s) 192, 331, 541, 574, 619
Bme1390I CCNGG 2 cut(s) 187, 494
BmeT110I CYCGRG 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 187, 494
BmsI GCATC 3 cut(s) 433, 451, 569
Bpu10I CCTNAGC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 432
BsaJI CCNNGG 2 cut(s) 288, 447
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 3 cut(s) 101, 279, 330
BseBI CCWGG 2 cut(s) 187, 494
BseDI CCNNGG 2 cut(s) 288, 447
BseMI GCAATG 3 cut(s) 101, 279, 330
BseMII CTCAG 2 cut(s) 123, 296
BseNI ACTGG 1 cut(s) 160
BseXI GCAGC 5 cut(s) 202, 341, 551, 559, 629
BsiHKAI GWGCWC 2 cut(s) 241, 501
BsiHKCI CYCGRG 1 cut(s) 602
BsoBI CYCGRG 1 cut(s) 602
Bsp1286I GDGCHC 2 cut(s) 241, 501
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 3 cut(s) 27, 464, 575
BspCNI CTCAG 2 cut(s) 124, 295
BspLI GGNNCC 1 cut(s) 351
BspQI GCTCTTC 1 cut(s) 45
BsrDI GCAATG 3 cut(s) 101, 279, 330
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 288, 447
BssMI GATC 1 cut(s) 598
BssNI GRCGYC 1 cut(s) 432
Bst2UI CCWGG 2 cut(s) 187, 494
Bst6I CTCTTC 2 cut(s) 45, 462
BstACI GRCGYC 1 cut(s) 432
BstAPI GCANNNNNTGC 2 cut(s) 274, 278
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 270, 279, 363
BstDEI CTNAG 4 cut(s) 132, 203, 282, 623
BstDSI CCRYGG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 1 cut(s) 601
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 9 cut(s) 35, 199, 274, 278, 320, 329, 362, 397, 591
BstNI CCWGG 2 cut(s) 187, 494
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 185, 492
BstV1I GCAGC 5 cut(s) 202, 341, 551, 559, 629
BtgI CCRYGG 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 270, 279, 363
CfoI GCGC 1 cut(s) 400
CseI GACGC 1 cut(s) 440
CsiI ACCWGGT 1 cut(s) 492
CviAII CATG 4 cut(s) 68, 278, 304, 633
DdeI CTNAG 4 cut(s) 132, 203, 282, 623
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
Eam1104I CTCTTC 2 cut(s) 45, 462
EarI CTCTTC 2 cut(s) 45, 462
Ecl136II GAGCTC 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 241
Eco53kI GAGCTC 1 cut(s) 239
Eco88I CYCGRG 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 185, 492
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 4 cut(s) 71, 281, 307, 636
FaiI YATR 7 cut(s) 69, 264, 279, 305, 410, 437, 634
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 4 cut(s) 67, 277, 303, 632
FauI CCCGC 1 cut(s) 568
Fnu4HI GCNGC 5 cut(s) 191, 330, 540, 573, 618
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 5 cut(s) 191, 330, 540, 573, 618
FspBI CTAG 4 cut(s) 75, 182, 194, 315
FspI TGCGCA 1 cut(s) 399
GlaI GCGC 1 cut(s) 399
GluI GCNGC 5 cut(s) 191, 330, 540, 573, 618
HgaI GACGC 1 cut(s) 440
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 1 cut(s) 432
Hin1II CATG 4 cut(s) 71, 281, 307, 636
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 64
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 3 cut(s) 98, 387, 430
Hpy188III TCNNGA 3 cut(s) 44, 602, 604
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 82
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 6 cut(s) 106, 257, 277, 323, 356, 560
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 199, 274, 278, 320, 329, 362, 397, 591
HpyF3I CTNAG 4 cut(s) 132, 203, 282, 623
HpySE526I ACGT 1 cut(s) 376
Hsp92I GRCGYC 1 cut(s) 432
Hsp92II CATG 4 cut(s) 71, 281, 307, 636
HspAI GCGC 1 cut(s) 398
Kzo9I GATC 1 cut(s) 598
LguI GCTCTTC 1 cut(s) 45
LmnI GCTCC 4 cut(s) 98, 167, 355, 547
Lsp1109I GCAGC 5 cut(s) 202, 341, 551, 559, 629
LweI GCATC 3 cut(s) 433, 451, 569
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 4 cut(s) 75, 182, 194, 315
MaeII ACGT 1 cut(s) 376
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 3 cut(s) 32, 125, 479
MhlI GDGCHC 2 cut(s) 241, 501
MluCI AATT 3 cut(s) 252, 507, 555
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 8 cut(s) 28, 71, 157, 242, 298, 463, 535, 542
Mph1103I ATGCAT 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 8
MspA1I CMGCKG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 187, 494
MvaI CCWGG 2 cut(s) 187, 494
MwoI GCNNNNNNNGC 9 cut(s) 35, 199, 274, 278, 320, 329, 362, 397, 591
NdeII GATC 1 cut(s) 598
NlaIII CATG 4 cut(s) 71, 281, 307, 636
NlaIV GGNNCC 1 cut(s) 351
NsbI TGCGCA 1 cut(s) 399
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 5 cut(s) 192, 331, 541, 574, 619
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 377
Psp124BI GAGCTC 1 cut(s) 241
Psp6I CCWGG 2 cut(s) 185, 492
PspGI CCWGG 2 cut(s) 185, 492
PspN4I GGNNCC 1 cut(s) 351
PvuII CAGCTG 1 cut(s) 332
SacI GAGCTC 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 45
SatI GCNGC 5 cut(s) 191, 330, 540, 573, 618
Sau3AI GATC 1 cut(s) 598
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 187, 494
SduI GDGCHC 2 cut(s) 241, 501
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 3 cut(s) 433, 451, 569
Sfr274I CTCGAG 1 cut(s) 602
SlaI CTCGAG 1 cut(s) 602
SmlI CTYRAG 2 cut(s) 240, 602
SmoI CTYRAG 2 cut(s) 240, 602
SphI GCATGC 1 cut(s) 281
Sse9I AATT 3 cut(s) 252, 507, 555
SsiI CCGC 3 cut(s) 27, 464, 575
SspMI CTAG 4 cut(s) 75, 182, 194, 315
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 2 cut(s) 185, 492
TaiI ACGT 1 cut(s) 379
TaqI TCGA 3 cut(s) 235, 501, 603
TasI AATT 3 cut(s) 252, 507, 555
TseI GCWGC 5 cut(s) 190, 329, 539, 572, 617
TspDTI ATGAA 3 cut(s) 17, 320, 519
XceI RCATGY 1 cut(s) 281
XhoI CTCGAG 1 cut(s) 602
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 75, 182, 194, 315
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.