Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011816

Physical Location & Seq

Genomic Coordinates Reverse (-)

18874631 .. 18877117

Gene Structure 2487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15650.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAACATGTTCAGTAAGAAACCCACGGCCAAAGAGGCTCTTCGGGAGAGCAAGAGAGAAATGGCTAATGCTACCAGAGGGATAGAGAAGGAAATTGGAGCATTGCAATTAGAAGAAAAGAAGCTTGTCGCTGAGATAAAGAGAACAGCTAAAACCGGAAACGAGGGAGCAACTAAAATACTAGCCAGGCAGCTAGTCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTCGAGCTCAAATGAGAGGAATAGCAACTCATACGCAGGCAATGCATGCTCAGTCCTCAGTTGCTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGCTCCCGCAAAGCAAGCAAAGGTGATACGCGAGTTTCAGAAGCAATCTGCGCAAATGGATATGACTACTGAAATGATGTCCGATGCCATAGATGATGCCTTGGATAATGATGAGGCGGAAGAGGAAACTGACGAGCTGACAGACCAGGTGCTGGATGAAATTGGCGTTGATGTCGCCTCGCAGCTTTCAGCAGCTCCCAAAGGAAAAATTGCATCAAAGAACGCTGAGGGTGTTAGCAGTTCCAGCGTTGCTGATCTTGAGAAAAGATTGGCAGCTCTTAGAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

213

Amino Acids

22.95

Weight (kDa)

8.73

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03950
fragaria_vesca	FvH4_2g21140 FvH4_2g21140
malus_domestica	MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica	Prupe.8G220500_v2.0.a1
pyrus_communis	pycom10g15650
rosa_chinensis	RchiOBHm_Chr6g0287631
rosa_laevigata	RLG00000012478
rosa_multiflora	Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii	Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa	Rorug06G0190300 Rorug06G0190400
rosa_samantha	Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana	Rw6G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	399
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	354, 464
AcoI	YGGCCR	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	6
AjnI	CCWGG	2 cut(s)	185, 492
Alw21I	GWGCWC	1 cut(s)	241
AlwNI	CAGNNNCTG	2 cut(s)	296, 499
AoxI	GGCC	1 cut(s)	27
ApeKI	GCWGC	5 cut(s)	190, 329, 529, 539, 620
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	400
AsuHPI	GGTGA	1 cut(s)	382
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BanII	GRGCYC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	241
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	5 cut(s)	202, 341, 541, 551, 632
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	2 cut(s)	187, 494
BfaI	CTAG	3 cut(s)	182, 194, 315
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	5 cut(s)	191, 330, 530, 540, 621
BlsI	GCNGC	5 cut(s)	192, 331, 531, 541, 622
Bme1390I	CCNGG	2 cut(s)	187, 494
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	187, 494
BmsI	GCATC	3 cut(s)	421, 433, 569
Bpu10I	CCTNAGC	2 cut(s)	203, 573
BpuEI	CTTGAG	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	24, 447
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse3DI	GCAATG	3 cut(s)	101, 279, 330
BseBI	CCWGG	2 cut(s)	187, 494
BseDI	CCNNGG	2 cut(s)	24, 447
BseGI	GGATG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMI	GCAATG	3 cut(s)	101, 279, 330
BseMII	CTCAG	4 cut(s)	123, 296, 303, 564
BseXI	GCAGC	5 cut(s)	202, 341, 541, 551, 632
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	499
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	601
BspACI	CCGC	2 cut(s)	354, 464
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	4 cut(s)	124, 295, 302, 565
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	351
BspQI	GCTCTTC	1 cut(s)	45
BsrDI	GCAATG	3 cut(s)	101, 279, 330
BssECI	CCNNGG	2 cut(s)	24, 447
BssMI	GATC	1 cut(s)	601
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	2 cut(s)	187, 494
Bst6I	CTCTTC	2 cut(s)	45, 462
BstAPI	GCANNNNNTGC	2 cut(s)	274, 278
BstC8I	GCNNGC	3 cut(s)	270, 279, 363
BstDEI	CTNAG	6 cut(s)	132, 203, 282, 289, 573, 626
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	508
BstFNI	CGCG	1 cut(s)	378
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	1 cut(s)	604
BstMBI	GATC	1 cut(s)	601
BstMWI	GCNNNNNNNGC	9 cut(s)	35, 199, 274, 278, 320, 329, 362, 397, 591
BstNI	CCWGG	2 cut(s)	187, 494
BstNSI	RCATGY	2 cut(s)	10, 281
BstSCI	CCNGG	2 cut(s)	185, 492
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	202, 341, 541, 551, 632
BsuRI	GGCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	508
Cac8I	GCNNGC	3 cut(s)	270, 279, 363
CaiI	CAGNNNCTG	2 cut(s)	296, 499
CfoI	GCGC	1 cut(s)	400
CsiI	ACCWGGT	1 cut(s)	492
CviAII	CATG	4 cut(s)	7, 278, 304, 636
DdeI	CTNAG	6 cut(s)	132, 203, 282, 289, 573, 626
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	45, 462
EarI	CTCTTC	2 cut(s)	45, 462
EciI	GGCGGA	1 cut(s)	479
Ecl136II	GAGCTC	1 cut(s)	239
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	239
EcoICRI	GAGCTC	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	185, 492
EcoT14I	CCWWGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	4 cut(s)	10, 281, 307, 639
FaiI	YATR	8 cut(s)	8, 264, 279, 305, 335, 410, 437, 637
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	4 cut(s)	6, 277, 303, 635
FauI	CCCGC	1 cut(s)	361
Fnu4HI	GCNGC	5 cut(s)	191, 330, 530, 540, 621
FokI	GGATG	1 cut(s)	515
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	5 cut(s)	191, 330, 530, 540, 621
FspBI	CTAG	3 cut(s)	182, 194, 315
FspI	TGCGCA	1 cut(s)	399
GlaI	GCGC	1 cut(s)	399
GluI	GCNGC	5 cut(s)	191, 330, 530, 540, 621
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	400
Hin1II	CATG	4 cut(s)	10, 281, 307, 639
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HindIII	AAGCTT	1 cut(s)	122
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	387, 430
Hpy188III	TCNNGA	2 cut(s)	44, 605
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	3 cut(s)	106, 277, 560
HpyF10VI	GCNNNNNNNGC	9 cut(s)	35, 199, 274, 278, 320, 329, 362, 397, 591
HpyF3I	CTNAG	6 cut(s)	132, 203, 282, 289, 573, 626
Hsp92II	CATG	4 cut(s)	10, 281, 307, 639
HspAI	GCGC	1 cut(s)	398
Kzo9I	GATC	1 cut(s)	601
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	4 cut(s)	98, 167, 355, 547
Lsp1109I	GCAGC	5 cut(s)	202, 341, 541, 551, 632
LweI	GCATC	3 cut(s)	421, 433, 569
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	3 cut(s)	182, 194, 315
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	3 cut(s)	32, 125, 479
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	4 cut(s)	93, 107, 507, 555
MnlI	CCTC	9 cut(s)	28, 71, 157, 242, 298, 454, 463, 535, 568
Mph1103I	ATGCAT	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	8
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	187, 494
MvaI	CCWGG	2 cut(s)	187, 494
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	9 cut(s)	35, 199, 274, 278, 320, 329, 362, 397, 591
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	4 cut(s)	10, 281, 307, 639
NlaIV	GGNNCC	1 cut(s)	351
NsbI	TGCGCA	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	2 cut(s)	10, 281
PaeI	GCATGC	1 cut(s)	281
PciI	ACATGT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	192, 331, 531, 541, 622
PscI	ACATGT	1 cut(s)	6
Psp124BI	GAGCTC	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	185, 492
PspGI	CCWGG	2 cut(s)	185, 492
PspN4I	GGNNCC	1 cut(s)	351
PstNI	CAGNNNCTG	2 cut(s)	296, 499
SacI	GAGCTC	1 cut(s)	241
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	5 cut(s)	191, 330, 530, 540, 621
Sau3AI	GATC	1 cut(s)	601
ScrFI	CCNGG	2 cut(s)	187, 494
SduI	GDGCHC	1 cut(s)	241
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	3 cut(s)	421, 433, 569
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	4 cut(s)	93, 107, 507, 555
SsiI	CCGC	2 cut(s)	354, 464
SspMI	CTAG	3 cut(s)	182, 194, 315
SstI	GAGCTC	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	185, 492
StyI	CCWWGG	1 cut(s)	447
TaqI	TCGA	1 cut(s)	235
TasI	AATT	4 cut(s)	93, 107, 507, 555
TseI	GCWGC	5 cut(s)	190, 329, 529, 539, 620
TspDTI	ATGAA	4 cut(s)	17, 320, 350, 519
Van91I	CCANNNNNTGG	1 cut(s)	499
XceI	RCATGY	2 cut(s)	10, 281
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	182, 194, 315
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.