FvH4_2g21140

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011816
Physical Location & Seq
Forward (+)
17606089 .. 17609371
3283 bp
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UTR
Exon/CDS
Intron
FvH4_2g21140.t2

Sequence Viewer

Length: 639 bp
ATGAACATCTTCTCCAAGAAGCCCAACGCCAAAGAGGCGCTTCGGGAGAGCAAAAGAGAAATGGCGAATGCTACTAGAGGGATAGAGAGGGAAATTGGAGCATTGCAATTCGAGGAGAAGAAGCTCGTTGCTGAGATAAAGAGAACTGCTAAAACAGGAAATGACGGAGCAACTAAGATACTGGCCAGGCAGCTAATCAGGCTCAGGCAACAGATAGCTAACTTACAAGGAAGTAGGGCTCAAATGAGAGGAATAGCAACTCATACGCAGGCAATGCACGCCCAGTCATCAGTTGCAGTTGGCATGAAAGGTGCTAGTAAGGCGATGGAAGCTATGAATAAGCAAATGGCTCCTGCAAAGCAAGCAAAGGTTATACGCGAATTTCAGAAGCAGTCTGCACAGATGGATATGACTACTGAAATGATGTCCGACACTATAGATGACGCCTTAGATAGTGATGAGGCAGAAGAGGAAACTGAGGAGCTGACAAACCAGGTGCTGGATGAAATTGGTGTTGATGTTGCCTCACAGTTGTCAGCAGCTCCAAAAGGAAGAATTGCGGCAAAGAACTCTGAGGGTGTTGGCAGTTCCAGCGTTGACGAGTTGGAGAAAAGATTGGCAGCTCTCAGGAATCCTTGA

Protein Analysis

213

Amino Acids

23.14

Weight (kDa)

7.9

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 16 - 185 8.3e-41 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03950
fragaria_vesca FvH4_2g21140 FvH4_2g21140
malus_domestica MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica Prupe.8G220500_v2.0.a1
pyrus_communis pycom10g15650
rosa_chinensis RchiOBHm_Chr6g0287631
rosa_laevigata RLG00000012478
rosa_multiflora Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa Rorug06G0190300 Rorug06G0190400
rosa_samantha Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana Rw6G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 499
AccII CGCG 1 cut(s) 378
AciI CCGC 1 cut(s) 560
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 499
AjnI CCWGG 2 cut(s) 185, 492
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 7 cut(s) 124, 193, 218, 332, 484, 542, 623
AluI AGCT 7 cut(s) 124, 193, 218, 332, 484, 542, 623
AlwNI CAGNNNCTG 1 cut(s) 499
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 190, 539, 620
ApoI RAATTY 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 40
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 1 cut(s) 241
BbvI GCAGC 3 cut(s) 202, 551, 632
BccI CCATC 2 cut(s) 319, 397
BciT130I CCWGG 2 cut(s) 187, 494
BfaI CTAG 2 cut(s) 75, 315
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 4 cut(s) 191, 540, 561, 621
BlsI GCNGC 4 cut(s) 192, 541, 562, 622
Bme1390I CCNGG 2 cut(s) 187, 494
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 187, 494
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 203
BsaHI GRCGYC 1 cut(s) 444
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse1I ACTGG 2 cut(s) 186, 283
Bse3DI GCAATG 2 cut(s) 101, 279
BseBI CCWGG 2 cut(s) 187, 494
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 1 cut(s) 499
BseMI GCAATG 2 cut(s) 101, 279
BseMII CTCAG 4 cut(s) 123, 217, 468, 564
BseNI ACTGG 2 cut(s) 186, 283
BseRI GAGGAG 2 cut(s) 128, 494
BseXI GCAGC 3 cut(s) 202, 551, 632
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 499
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 241
BspACI CCGC 1 cut(s) 560
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 5 cut(s) 124, 216, 469, 565, 639
BspFNI CGCG 1 cut(s) 378
BspLI GGNNCC 1 cut(s) 351
BsrDI GCAATG 2 cut(s) 101, 279
BsrI ACTGG 2 cut(s) 186, 283
BssNI GRCGYC 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 187, 494
Bst4CI ACNGT 1 cut(s) 531
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 444
BstAPI GCANNNNNTGC 1 cut(s) 274
BstC8I GCNNGC 3 cut(s) 270, 279, 363
BstDEI CTNAG 7 cut(s) 132, 174, 203, 448, 477, 573, 626
BstF5I GGATG 1 cut(s) 508
BstFNI CGCG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstMWI GCNNNNNNNGC 8 cut(s) 35, 199, 274, 278, 320, 329, 362, 591
BstNI CCWGG 2 cut(s) 187, 494
BstSCI CCNGG 2 cut(s) 185, 492
BstSFI CTRYAG 1 cut(s) 435
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 3 cut(s) 202, 551, 632
BsuRI GGCC 1 cut(s) 185
BtgZI GCGATG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 3 cut(s) 270, 279, 363
CaiI CAGNNNCTG 1 cut(s) 499
CfoI GCGC 1 cut(s) 40
CseI GACGC 1 cut(s) 452
CsiI ACCWGGT 1 cut(s) 492
CviAII CATG 1 cut(s) 304
DdeI CTNAG 7 cut(s) 132, 174, 203, 448, 477, 573, 626
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 185, 492
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 1 cut(s) 307
FaiI YATR 6 cut(s) 264, 305, 335, 374, 410, 437
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 4 cut(s) 191, 540, 561, 621
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 4 cut(s) 191, 540, 561, 621
FspBI CTAG 2 cut(s) 75, 315
GlaI GCGC 1 cut(s) 39
GluI GCNGC 4 cut(s) 191, 540, 561, 621
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 1 cut(s) 185
HgaI GACGC 1 cut(s) 452
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HinfI GANTC 1 cut(s) 631
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 3 cut(s) 387, 430, 574
Hpy188III TCNNGA 2 cut(s) 44, 628
Hpy8I GTNNAC 1 cut(s) 598
HpyCH4III ACNGT 1 cut(s) 531
HpyCH4V TGCA 5 cut(s) 106, 277, 296, 356, 398
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 199, 274, 278, 320, 329, 362, 591
HpyF3I CTNAG 7 cut(s) 132, 174, 203, 448, 477, 573, 626
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 38
LmnI GCTCC 5 cut(s) 98, 167, 355, 481, 547
Lsp1109I GCAGC 3 cut(s) 202, 551, 632
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 2 cut(s) 75, 315
MboII GAAGA 3 cut(s) 130, 479, 564
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 5 cut(s) 93, 107, 380, 507, 555
MluNI TGGCCA 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 453, 585
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 185
Msp20I TGGCCA 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 187, 494
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 2 cut(s) 187, 494
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 8 cut(s) 35, 199, 274, 278, 320, 329, 362, 591
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 351
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 631
PflMI CCANNNNNTGG 1 cut(s) 499
PkrI GCNGC 4 cut(s) 192, 541, 562, 622
Psp6I CCWGG 2 cut(s) 185, 492
PspGI CCWGG 2 cut(s) 185, 492
PspN4I GGNNCC 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 499
SatI GCNGC 4 cut(s) 191, 540, 561, 621
ScrFI CCNGG 2 cut(s) 187, 494
SduI GDGCHC 1 cut(s) 241
SexAI ACCWGGT 1 cut(s) 492
SfcI CTRYAG 1 cut(s) 435
Sse9I AATT 5 cut(s) 93, 107, 380, 507, 555
SsiI CCGC 1 cut(s) 560
SspMI CTAG 2 cut(s) 75, 315
StyD4I CCNGG 2 cut(s) 185, 492
TaaI ACNGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 111
TasI AATT 5 cut(s) 93, 107, 380, 507, 555
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 1 cut(s) 631
TseI GCWGC 3 cut(s) 190, 539, 620
TspDTI ATGAA 4 cut(s) 17, 320, 350, 519
TspGWI ACGGA 1 cut(s) 180
Van91I CCANNNNNTGG 1 cut(s) 499
XapI RAATTY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 75, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.