Rh6AG300800

Belongs to the SNF7 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0011816
Physical Location & Seq
Forward (+)
49961717 .. 49965392
3676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG300800.1

Sequence Viewer

Length: 537 bp
ATGAACATCTTCTCCAAGAAGCCAAACGCCAAAGAGGCGCTTCGGGAAAGCAAGAGAGAAATGACTAATGCTACTAGAGGGATAGAGAAGGAAATTGGAGCATTGCAATTAGAAGAAAAAAAGCTCGTAGCTGAGATAAAGAGAACTGCTAAAACAGGAAATGAGGCAGCAACTAAAATACTGGCCAGGCAGCTAATCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTAGGGCTCAAATGAGAGGAATAGCAACTCATACACAGGCAATGCACGCCCAGTCATCAGTTGCTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGATCCTGCAAAACAAGCACAGGTGATACGTGACTTTCAGAAGCAGTCTGCACAGATGGATATGACTACTGAAATGATGTCGGACACTATAGATGATGCCATAGATAGTGATGGGGCAGAAGAGGAAACTGAGGAGCTGACAAACCAGGTACGTCCCCACTATTTGCATCTTTTCTTACATTCATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 map04144 map04217
Pfam Domains
Protein Families
Snf7

Protein Analysis

178

Amino Acids

19.9

Weight (kDa)

9.12

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Snf7 PF03357 16 - 167 1.6e-37 Snf7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03950
fragaria_vesca FvH4_2g21140 FvH4_2g21140
malus_domestica MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica Prupe.8G220500_v2.0.a1
pyrus_communis pycom10g15650
rosa_chinensis RchiOBHm_Chr6g0287631
rosa_laevigata RLG00000012478
rosa_multiflora Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa Rorug06G0190300 Rorug06G0190400
rosa_samantha Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana Rw6G025950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 344, 357
AcoI YGGCCR 1 cut(s) 183
AfaI GTAC 1 cut(s) 498
AjnI CCWGG 2 cut(s) 185, 492
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 6 cut(s) 124, 131, 193, 218, 332, 484
AluI AGCT 6 cut(s) 124, 131, 193, 218, 332, 484
AlwI GGATC 2 cut(s) 344, 357
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 167, 190, 329
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 382
BalI TGGCCA 1 cut(s) 185
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 241
BbvI GCAGC 3 cut(s) 179, 202, 341
BccI CCATC 2 cut(s) 397, 452
BciT130I CCWGG 2 cut(s) 187, 494
BfaI CTAG 2 cut(s) 75, 315
BfmI CTRYAG 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 41
BglI GCCNNNNNGGC 1 cut(s) 35
BisI GCNGC 3 cut(s) 168, 191, 330
BlsI GCNGC 3 cut(s) 169, 192, 331
Bme1390I CCNGG 2 cut(s) 187, 494
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 2 cut(s) 187, 494
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 2 cut(s) 433, 523
BmuI ACTGGG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 377
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 186, 283
Bse3DI GCAATG 3 cut(s) 101, 279, 330
BseBI CCWGG 2 cut(s) 187, 494
BseMI GCAATG 3 cut(s) 101, 279, 330
BseMII CTCAG 2 cut(s) 123, 468
BseNI ACTGG 2 cut(s) 186, 283
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 3 cut(s) 179, 202, 341
BsgI GTGCAG 1 cut(s) 381
BshFI GGCC 1 cut(s) 185
BslFI GGGAC 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 349
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 124, 469
BspLI GGNNCC 1 cut(s) 351
BspPI GGATC 2 cut(s) 344, 357
BsrDI GCAATG 3 cut(s) 101, 279, 330
BsrI ACTGG 2 cut(s) 186, 283
BssMI GATC 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 187, 494
Bst6I CTCTTC 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 132, 203, 477
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 1 cut(s) 352
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 6 cut(s) 35, 199, 278, 320, 329, 362
BstNI CCWGG 2 cut(s) 187, 494
BstSCI CCNGG 2 cut(s) 185, 492
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 179, 202, 341
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
BsuRI GGCC 1 cut(s) 185
Cac8I GCNNGC 1 cut(s) 279
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 1 cut(s) 40
CsiI ACCWGGT 1 cut(s) 492
Csp6I GTAC 1 cut(s) 497
CviAII CATG 1 cut(s) 304
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 3 cut(s) 132, 203, 477
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 185, 492
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 1 cut(s) 307
FaiI YATR 7 cut(s) 264, 305, 335, 410, 437, 449, 532
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 486
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 168, 191, 330
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 3 cut(s) 168, 191, 330
FspBI CTAG 2 cut(s) 75, 315
GlaI GCGC 1 cut(s) 39
GluI GCNGC 3 cut(s) 168, 191, 330
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 1 cut(s) 185
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 307
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 387, 430
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 82
HpyCH4IV ACGT 2 cut(s) 376, 499
HpyCH4V TGCA 5 cut(s) 106, 277, 356, 398, 514
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 199, 278, 320, 329, 362
HpyF3I CTNAG 3 cut(s) 132, 203, 477
HpySE526I ACGT 2 cut(s) 376, 499
Hsp92II CATG 1 cut(s) 307
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 98, 481
Lsp1109I GCAGC 3 cut(s) 179, 202, 341
LweI GCATC 2 cut(s) 433, 523
MabI ACCWGGT 1 cut(s) 492
MaeI CTAG 2 cut(s) 75, 315
MaeII ACGT 2 cut(s) 376, 499
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 2 cut(s) 125, 479
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 2 cut(s) 93, 107
MluNI TGGCCA 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 408
MnlI CCTC 6 cut(s) 28, 71, 157, 242, 463, 472
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 535
Msp20I TGGCCA 1 cut(s) 185
MspR9I CCNGG 2 cut(s) 187, 494
MvaI CCWGG 2 cut(s) 187, 494
MwoI GCNNNNNNNGC 6 cut(s) 35, 199, 278, 320, 329, 362
NdeII GATC 1 cut(s) 349
NlaIII CATG 1 cut(s) 307
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 169, 192, 331
Ppu21I YACGTR 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 185, 492
PspGI CCWGG 2 cut(s) 185, 492
PspN4I GGNNCC 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
SaqAI TTAA 1 cut(s) 535
SatI GCNGC 3 cut(s) 168, 191, 330
Sau3AI GATC 1 cut(s) 349
ScrFI CCNGG 2 cut(s) 187, 494
SduI GDGCHC 1 cut(s) 241
SexAI ACCWGGT 1 cut(s) 492
SfaNI GCATC 2 cut(s) 433, 523
SfcI CTRYAG 1 cut(s) 435
Sse9I AATT 2 cut(s) 93, 107
SspMI CTAG 2 cut(s) 75, 315
StyD4I CCNGG 2 cut(s) 185, 492
TaiI ACGT 2 cut(s) 379, 502
TasI AATT 2 cut(s) 93, 107
Tru1I TTAA 1 cut(s) 535
Tru9I TTAA 1 cut(s) 535
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 3 cut(s) 167, 190, 329
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 17, 320, 350, 519
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 75, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.