Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011816

Physical Location & Seq

Genomic Coordinates Forward (+)

49945887 .. 49949147

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG314700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACTAATGCTACTAGAGGGATAGAGAAGGAAATTGGAGCATTGCAATTAGAAGAAAAAAAGCTCGTTGCTGAGATAAAGAGAACTGCTAAAACAGGAAATGAGGCAGCAACTAAAATACTGGCCAGGCAGCTAATCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTAGGGCTCAAATGAGAGGAATAGCAACTCATACACAGGCAATGCACGCCCAGTCATCAGTTGCTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGATCCTGCAAAGCAAGCACAAGTGATACGTGACTTTCAGAAGCAGTCTGCACAGATGGATATGACTACTGAAATGATGTCAGACGCTATAGATGATGCCATAGATAGTGATGAGGCAGAAGAGGAAACTGAGGAGCTGACAAACCAGGTGCTAGATGAAATTGGTGTCGATGTTGCCTCACAGTTGTCAGCAGCTCCAAAAGGAAGAATTGCAGCAAAGAACTCTCAGGGTGTTAGCAGTTCTGGCACTGACGAGCTGGAGGAAAGATTGGCAGCTCTCAGAAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

192

Amino Acids

20.72

Weight (kDa)

5.36

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	1 - 165	2.3e-40	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03950
fragaria_vesca	FvH4_2g21140 FvH4_2g21140
malus_domestica	MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica	Prupe.8G220500_v2.0.a1
pyrus_communis	pycom10g15650
rosa_chinensis	RchiOBHm_Chr6g0287631
rosa_laevigata	RLG00000012478
rosa_multiflora	Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii	Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa	Rorug06G0190300 Rorug06G0190400
rosa_samantha	Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana	Rw6G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	284, 297
AcoI	YGGCCR	1 cut(s)	123
AjnI	CCWGG	2 cut(s)	125, 432
AluBI	AGCT	8 cut(s)	64, 133, 158, 272, 424, 482, 544, 563
AluI	AGCT	8 cut(s)	64, 133, 158, 272, 424, 482, 544, 563
AlwI	GGATC	2 cut(s)	284, 297
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	6 cut(s)	107, 130, 269, 479, 500, 560
BalI	TGGCCA	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	181
BbvI	GCAGC	6 cut(s)	119, 142, 281, 491, 512, 572
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	127, 434
BfaI	CTAG	3 cut(s)	15, 255, 440
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	6 cut(s)	108, 131, 270, 480, 501, 561
BlsI	GCNGC	6 cut(s)	109, 132, 271, 481, 502, 562
Bme1390I	CCNGG	2 cut(s)	127, 434
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	127, 434
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	566
Bpu10I	CCTNAGC	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	317
Bse1I	ACTGG	2 cut(s)	126, 223
Bse3DI	GCAATG	3 cut(s)	41, 219, 270
BseBI	CCWGG	2 cut(s)	127, 434
BseMI	GCAATG	3 cut(s)	41, 219, 270
BseMII	CTCAG	3 cut(s)	63, 408, 527
BseNI	ACTGG	2 cut(s)	126, 223
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	6 cut(s)	119, 142, 281, 491, 512, 572
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	4 cut(s)	64, 409, 526, 579
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	2 cut(s)	284, 297
BsrDI	GCAATG	3 cut(s)	41, 219, 270
BsrI	ACTGG	2 cut(s)	126, 223
BssMI	GATC	1 cut(s)	289
Bst2UI	CCWGG	2 cut(s)	127, 434
Bst4CI	ACNGT	1 cut(s)	471
Bst6I	CTCTTC	1 cut(s)	402
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	219, 303
BstDEI	CTNAG	5 cut(s)	72, 143, 417, 513, 566
BstKTI	GATC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 218, 260, 269, 302, 531
BstNI	CCWGG	2 cut(s)	127, 434
BstSCI	CCNGG	2 cut(s)	125, 432
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	6 cut(s)	119, 142, 281, 491, 512, 572
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	125
BtsIMutI	CAGTG	1 cut(s)	534
Cac8I	GCNNGC	2 cut(s)	219, 303
CaiI	CAGNNNCTG	1 cut(s)	236
CseI	GACGC	1 cut(s)	380
CsiI	ACCWGGT	1 cut(s)	432
CviAII	CATG	1 cut(s)	244
DdeI	CTNAG	5 cut(s)	72, 143, 417, 513, 566
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	125, 432
EcoT38I	GRGCYC	1 cut(s)	181
FaeI	CATG	1 cut(s)	247
FaiI	YATR	6 cut(s)	204, 245, 275, 350, 377, 389
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	6 cut(s)	108, 131, 270, 480, 501, 561
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	6 cut(s)	108, 131, 270, 480, 501, 561
FspBI	CTAG	3 cut(s)	15, 255, 440
GluI	GCNGC	6 cut(s)	108, 131, 270, 480, 501, 561
GsuI	CTGGAG	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	125
HgaI	GACGC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	327, 370, 569
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	471
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	46, 217, 296, 338, 500
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 218, 260, 269, 302, 531
HpyF3I	CTNAG	5 cut(s)	72, 143, 417, 513, 566
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	38, 421, 487
Lsp1109I	GCAGC	6 cut(s)	119, 142, 281, 491, 512, 572
LweI	GCATC	1 cut(s)	373
MabI	ACCWGGT	1 cut(s)	432
MaeI	CTAG	3 cut(s)	15, 255, 440
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	3 cut(s)	65, 419, 504
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	181
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	4 cut(s)	33, 47, 447, 495
MluNI	TGGCCA	1 cut(s)	125
MnlI	CCTC	8 cut(s)	11, 97, 182, 394, 403, 412, 475, 541
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
Msp20I	TGGCCA	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	127, 434
MvaI	CCWGG	2 cut(s)	127, 434
MwoI	GCNNNNNNNGC	6 cut(s)	139, 218, 260, 269, 302, 531
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	317
PkrI	GCNGC	6 cut(s)	109, 132, 271, 481, 502, 562
Ppu21I	YACGTR	1 cut(s)	317
Psp6I	CCWGG	2 cut(s)	125, 432
PspGI	CCWGG	2 cut(s)	125, 432
PspN4I	GGNNCC	1 cut(s)	291
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	289
SatI	GCNGC	6 cut(s)	108, 131, 270, 480, 501, 561
Sau3AI	GATC	1 cut(s)	289
ScrFI	CCNGG	2 cut(s)	127, 434
SduI	GDGCHC	1 cut(s)	181
SexAI	ACCWGGT	1 cut(s)	432
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	375
Sse9I	AATT	4 cut(s)	33, 47, 447, 495
SspMI	CTAG	3 cut(s)	15, 255, 440
StyD4I	CCNGG	2 cut(s)	125, 432
TaaI	ACNGT	1 cut(s)	471
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	33, 47, 447, 495
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	6 cut(s)	107, 130, 269, 479, 500, 560
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	3 cut(s)	260, 290, 459
TspRI	CASTG	1 cut(s)	541
XspI	CTAG	3 cut(s)	15, 255, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.