Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004974.1

Orthogroup ID

OG0011816

Physical Location & Seq

Genomic Coordinates Reverse (-)

1781 .. 4598

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004974.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgaacatcttctccaagaagccaaacgccaaagaggcgcttcgggaaagcaagagagaaatgactaatgctactagagggatagagaaggaaattggagcattgcaattagaagaaaaaaagctcgtagctgagataaagagaactgctaaaacaggaaatgaggcagcaactaaaatactggccaggcagctaatcaggcttaggcaacagatagctaacttacaaggaagtagggctcaaatgagaggaatggcaactcatacacaggcaatgcacgcccagtcatcagttgctgttggcatgaaaggtgctagtaaggcaatggcagctatgaataagcaaatggatcctgcaaaacaagcacaggtgatacgtgactttcagaagcagtctgcacagatggatatgactactgaaatgatgtcggacactatagatgatgccatagatagtgatggggcagaagaggaaactgaggagctgacaaaccaggtgctagatgaaattggtgtcgatgttgcctcacagttgtcagcagctccaaaaggaagaattgcagcaaagaactctcagggtgttagcagttctggcactgacgagctggaggaaagattggcagctctcagaaatccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

212

Amino Acids

23.06

Weight (kDa)

6.78

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03950
fragaria_vesca	FvH4_2g21140 FvH4_2g21140
malus_domestica	MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica	Prupe.8G220500_v2.0.a1
pyrus_communis	pycom10g15650
rosa_chinensis	RchiOBHm_Chr6g0287631
rosa_laevigata	RLG00000012478
rosa_multiflora	Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii	Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa	Rorug06G0190300 Rorug06G0190400
rosa_samantha	Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana	Rw6G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	344, 357
AcoI	YGGCCR	1 cut(s)	183
AjnI	CCWGG	2 cut(s)	185, 492
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	9 cut(s)	124, 131, 193, 218, 332, 484, 542, 604, 623
AluI	AGCT	9 cut(s)	124, 131, 193, 218, 332, 484, 542, 604, 623
AlwI	GGATC	2 cut(s)	344, 357
AlwNI	CAGNNNCTG	1 cut(s)	296
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	6 cut(s)	167, 190, 329, 539, 560, 620
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	185
BamHI	GGATCC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	241
BbvI	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
BccI	CCATC	2 cut(s)	397, 452
BciT130I	CCWGG	2 cut(s)	187, 494
BfaI	CTAG	3 cut(s)	75, 315, 500
BfmI	CTRYAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
BlsI	GCNGC	6 cut(s)	169, 192, 331, 541, 562, 622
Bme1390I	CCNGG	2 cut(s)	187, 494
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	187, 494
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	277
BpmI	CTGGAG	1 cut(s)	626
Bpu10I	CCTNAGC	1 cut(s)	203
BsaAI	YACGTR	1 cut(s)	377
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	186, 283
Bse3DI	GCAATG	3 cut(s)	101, 279, 330
BseBI	CCWGG	2 cut(s)	187, 494
BseMI	GCAATG	3 cut(s)	101, 279, 330
BseMII	CTCAG	3 cut(s)	123, 468, 587
BseNI	ACTGG	2 cut(s)	186, 283
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
BsgI	GTGCAG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	349
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	4 cut(s)	124, 469, 586, 639
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	2 cut(s)	344, 357
BsrDI	GCAATG	3 cut(s)	101, 279, 330
BsrI	ACTGG	2 cut(s)	186, 283
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	187, 494
Bst4CI	ACNGT	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	462
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	5 cut(s)	132, 203, 477, 573, 626
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 199, 278, 320, 329, 362, 591
BstNI	CCWGG	2 cut(s)	187, 494
BstSCI	CCNGG	2 cut(s)	185, 492
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	40
CsiI	ACCWGGT	1 cut(s)	492
CviAII	CATG	1 cut(s)	304
DdeI	CTNAG	5 cut(s)	132, 203, 477, 573, 626
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	185, 492
EcoT38I	GRGCYC	1 cut(s)	241
FaeI	CATG	1 cut(s)	307
FaiI	YATR	6 cut(s)	264, 305, 335, 410, 437, 449
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	1 cut(s)	303
Fnu4HI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
FspBI	CTAG	3 cut(s)	75, 315, 500
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
GsuI	CTGGAG	1 cut(s)	626
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	307
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	387, 430, 629
Hpy188III	TCNNGA	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	531
HpyCH4IV	ACGT	1 cut(s)	376
HpyCH4V	TGCA	5 cut(s)	106, 277, 356, 398, 560
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 199, 278, 320, 329, 362, 591
HpyF3I	CTNAG	5 cut(s)	132, 203, 477, 573, 626
HpySE526I	ACGT	1 cut(s)	376
Hsp92II	CATG	1 cut(s)	307
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	349
LmnI	GCTCC	3 cut(s)	98, 481, 547
Lsp1109I	GCAGC	6 cut(s)	179, 202, 341, 551, 572, 632
LweI	GCATC	1 cut(s)	433
MabI	ACCWGGT	1 cut(s)	492
MaeI	CTAG	3 cut(s)	75, 315, 500
MaeII	ACGT	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	3 cut(s)	125, 479, 564
MflI	RGATCY	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	241
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	4 cut(s)	93, 107, 507, 555
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	8 cut(s)	28, 71, 157, 242, 463, 472, 535, 601
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	187, 494
MvaI	CCWGG	2 cut(s)	187, 494
MwoI	GCNNNNNNNGC	7 cut(s)	35, 199, 278, 320, 329, 362, 591
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	1 cut(s)	307
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	169, 192, 331, 541, 562, 622
Ppu21I	YACGTR	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	185, 492
PspGI	CCWGG	2 cut(s)	185, 492
PspN4I	GGNNCC	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	296
PsuI	RGATCY	1 cut(s)	349
SatI	GCNGC	6 cut(s)	168, 191, 330, 540, 561, 621
Sau3AI	GATC	1 cut(s)	349
ScrFI	CCNGG	2 cut(s)	187, 494
SduI	GDGCHC	1 cut(s)	241
SexAI	ACCWGGT	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	433
SfcI	CTRYAG	1 cut(s)	435
Sse9I	AATT	4 cut(s)	93, 107, 507, 555
SspMI	CTAG	3 cut(s)	75, 315, 500
StyD4I	CCNGG	2 cut(s)	185, 492
TaaI	ACNGT	1 cut(s)	531
TaiI	ACGT	1 cut(s)	379
TaqI	TCGA	1 cut(s)	516
TasI	AATT	4 cut(s)	93, 107, 507, 555
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	6 cut(s)	167, 190, 329, 539, 560, 620
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	4 cut(s)	17, 320, 350, 519
TspRI	CASTG	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	75, 315, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.