Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011816

Physical Location & Seq

Genomic Coordinates Reverse (-)

19157179 .. 19159254

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCGCCATCGTTTTGATCCTCTTATTTACTTTTCCTTTCCCCATTTTTCTACAGGGATAGAGAAGGAAATTGGAGCATTGCAATTAGAAGAAAAAAAGCTCGTTGCTGAGATAAAGAGAACTGCTAAAACAGGAAATGAGGCAGCAACTAAAATACTGGCCAGGCAGCTAATCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTAGGGCTCAAATGAGAGGAATAGCAACTCATACACAGGCAATGCACGCCCAGTCATCAGTTGCTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGATCCTGCAAAGCAAGCACAGGTGATACGTGACTTTCAGAAGCAGTCTGCACAGATGGATATGACTACTGAAATGATGTCTGACGCTATAGATGATGCCGTAGATAGTGATGGGGCAGAAGAGGAAACTGAGGAGCTGACAAACCAGGTGCTAGATGAAATTGGTGTCGATGTTGCCTCACAGTTGTCAGCAGCTCCAAAAGGAAGAATTGCAGCAAAGAACTCTCAGGGTGTTGGCAGTTCTGGCACTGACGAGCTGGAGAAAAGATTGGCAGCTCTCAGAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

205

Amino Acids

22.21

Weight (kDa)

6.44

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	19 - 177	1.5e-39	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03950
fragaria_vesca	FvH4_2g21140 FvH4_2g21140
malus_domestica	MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica	Prupe.8G220500_v2.0.a1
pyrus_communis	pycom10g15650
rosa_chinensis	RchiOBHm_Chr6g0287631
rosa_laevigata	RLG00000012478
rosa_multiflora	Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii	Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa	Rorug06G0190300 Rorug06G0190400
rosa_samantha	Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana	Rw6G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	11, 320, 333
AcoI	YGGCCR	1 cut(s)	159
AjnI	CCWGG	2 cut(s)	161, 468
AluBI	AGCT	8 cut(s)	100, 169, 194, 308, 460, 518, 580, 599
AluI	AGCT	8 cut(s)	100, 169, 194, 308, 460, 518, 580, 599
AlwI	GGATC	3 cut(s)	11, 320, 333
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	6 cut(s)	143, 166, 305, 515, 536, 596
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	217
BbvI	GCAGC	6 cut(s)	155, 178, 317, 527, 548, 608
BccI	CCATC	3 cut(s)	15, 373, 428
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	163, 470
BfaI	CTAG	2 cut(s)	291, 476
BfmI	CTRYAG	2 cut(s)	51, 411
BisI	GCNGC	6 cut(s)	144, 167, 306, 516, 537, 597
BlsI	GCNGC	6 cut(s)	145, 168, 307, 517, 538, 598
Bme1390I	CCNGG	2 cut(s)	163, 470
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	2 cut(s)	163, 470
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	179
BsaAI	YACGTR	1 cut(s)	353
Bse1I	ACTGG	2 cut(s)	162, 259
Bse3DI	GCAATG	3 cut(s)	77, 255, 306
BseBI	CCWGG	2 cut(s)	163, 470
BseMI	GCAATG	3 cut(s)	77, 255, 306
BseMII	CTCAG	3 cut(s)	99, 444, 563
BseNI	ACTGG	2 cut(s)	162, 259
BseRI	GAGGAG	1 cut(s)	470
BseXI	GCAGC	6 cut(s)	155, 178, 317, 527, 548, 608
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	16, 325
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	4 cut(s)	100, 445, 562, 615
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	3 cut(s)	11, 320, 333
BsrDI	GCAATG	3 cut(s)	77, 255, 306
BsrI	ACTGG	2 cut(s)	162, 259
BssMI	GATC	2 cut(s)	16, 325
Bst2UI	CCWGG	2 cut(s)	163, 470
Bst4CI	ACNGT	1 cut(s)	507
Bst6I	CTCTTC	1 cut(s)	438
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	255, 339
BstDEI	CTNAG	5 cut(s)	108, 179, 453, 549, 602
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	19, 328
BstMBI	GATC	2 cut(s)	16, 325
BstMWI	GCNNNNNNNGC	6 cut(s)	175, 254, 296, 305, 338, 567
BstNI	CCWGG	2 cut(s)	163, 470
BstSCI	CCNGG	2 cut(s)	161, 468
BstSFI	CTRYAG	2 cut(s)	51, 411
BstV1I	GCAGC	6 cut(s)	155, 178, 317, 527, 548, 608
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	161
BtsIMutI	CAGTG	1 cut(s)	570
Cac8I	GCNNGC	2 cut(s)	255, 339
CaiI	CAGNNNCTG	1 cut(s)	272
CfoI	GCGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	416
CsiI	ACCWGGT	1 cut(s)	468
CviAII	CATG	2 cut(s)	280, 612
DdeI	CTNAG	5 cut(s)	108, 179, 453, 549, 602
DpnI	GATC	2 cut(s)	18, 327
DpnII	GATC	2 cut(s)	16, 325
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	438
EarI	CTCTTC	1 cut(s)	438
Eco24I	GRGCYC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	161, 468
EcoT38I	GRGCYC	1 cut(s)	217
FaeI	CATG	2 cut(s)	283, 615
FaiI	YATR	6 cut(s)	240, 281, 311, 386, 413, 613
FatI	CATG	2 cut(s)	279, 611
Fnu4HI	GCNGC	6 cut(s)	144, 167, 306, 516, 537, 597
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	6 cut(s)	144, 167, 306, 516, 537, 597
FspBI	CTAG	2 cut(s)	291, 476
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	6 cut(s)	144, 167, 306, 516, 537, 597
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	161
HgaI	GACGC	1 cut(s)	416
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	283, 615
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	363, 406, 605
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4IV	ACGT	1 cut(s)	352
HpyCH4V	TGCA	5 cut(s)	82, 253, 332, 374, 536
HpyF10VI	GCNNNNNNNGC	6 cut(s)	175, 254, 296, 305, 338, 567
HpyF3I	CTNAG	5 cut(s)	108, 179, 453, 549, 602
HpySE526I	ACGT	1 cut(s)	352
Hsp92II	CATG	2 cut(s)	283, 615
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	16, 325
LmnI	GCTCC	3 cut(s)	74, 457, 523
Lsp1109I	GCAGC	6 cut(s)	155, 178, 317, 527, 548, 608
LweI	GCATC	1 cut(s)	409
MabI	ACCWGGT	1 cut(s)	468
MaeI	CTAG	2 cut(s)	291, 476
MaeII	ACGT	1 cut(s)	352
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	18, 327
MboI	GATC	2 cut(s)	16, 325
MboII	GAAGA	3 cut(s)	101, 455, 540
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	4 cut(s)	69, 83, 483, 531
MluNI	TGGCCA	1 cut(s)	161
MnlI	CCTC	6 cut(s)	30, 133, 218, 439, 448, 511
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	163, 470
MvaI	CCWGG	2 cut(s)	163, 470
MwoI	GCNNNNNNNGC	6 cut(s)	175, 254, 296, 305, 338, 567
NdeII	GATC	2 cut(s)	16, 325
NlaIII	CATG	2 cut(s)	283, 615
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	353
PkrI	GCNGC	6 cut(s)	145, 168, 307, 517, 538, 598
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	2 cut(s)	161, 468
PspGI	CCWGG	2 cut(s)	161, 468
PspN4I	GGNNCC	1 cut(s)	327
PstNI	CAGNNNCTG	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	325
SatI	GCNGC	6 cut(s)	144, 167, 306, 516, 537, 597
Sau3AI	GATC	2 cut(s)	16, 325
ScrFI	CCNGG	2 cut(s)	163, 470
SduI	GDGCHC	1 cut(s)	217
SexAI	ACCWGGT	1 cut(s)	468
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	2 cut(s)	51, 411
Sse9I	AATT	4 cut(s)	69, 83, 483, 531
SspMI	CTAG	2 cut(s)	291, 476
StyD4I	CCNGG	2 cut(s)	161, 468
TaaI	ACNGT	1 cut(s)	507
TaiI	ACGT	1 cut(s)	355
TaqI	TCGA	1 cut(s)	492
TasI	AATT	4 cut(s)	69, 83, 483, 531
TscAI	CASTG	1 cut(s)	577
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	6 cut(s)	143, 166, 305, 515, 536, 596
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	296, 326, 495
TspRI	CASTG	1 cut(s)	577
XspI	CTAG	2 cut(s)	291, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.