Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0011816

Physical Location & Seq

Genomic Coordinates Forward (+)

20283680 .. 20286810

Gene Structure 3131 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00181010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAACATCTTCTCCAAGAAGCCCAACGCCAAAGAGGCGCTTCGGGAAAGCAAGAGAGAAATGACTAATGCTACTAGAGGAAAAAAGCTCGTTGCTGAGATAAAGAGAACTGCTAAAACAGGAAATGAGGCAGCAACTAAAATACTGGCCAGGCAGCTAATCAGGCTTAGGCAACAGATAGCTAACTTACAAGGAAGTAGGGCCCAAATGAGAGGAATAGCAACTCATACACAGGCAATGCACGCCCAGTCATCAGTTGCTGTTGGCATGAAAGGTGCTAGTAAGGCAATGGCAGCTATGAATAAGCAAATGGATCCTGCAAAGCAAGCAAAGGTGATACGTGACTTTCAGAAGCAGTCTGCACAGATGGATATGACTACTGAAATGATGTCTGACGCTATAGATGATGCCATAGATAGTGATGAGGCAGAAGAGGAAACTGAGGAGCTGACAAACCAGGTGCTAGATGAAATTGGTGTCGATGTTGCCTCACAGTTGTCAGCAGCTCCAAAAGGAAGAATTGCAGCAAAGAACTCTCAGGGTGTTGGCAGTTCTGGCACTGACGAGCTGGAGAAAAGATTGGCTGCTCTCAGAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

200

Amino Acids

21.7

Weight (kDa)

9.45

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Snf7	PF03357	18 - 173	9.3e-37	Snf7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03950
fragaria_vesca	FvH4_2g21140 FvH4_2g21140
malus_domestica	MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica	Prupe.8G220500_v2.0.a1
pyrus_communis	pycom10g15650
rosa_chinensis	RchiOBHm_Chr6g0287631
rosa_laevigata	RLG00000012478
rosa_multiflora	Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii	Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa	Rorug06G0190300 Rorug06G0190400
rosa_samantha	Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana	Rw6G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	308, 321
AcoI	YGGCCR	1 cut(s)	147
AjnI	CCWGG	2 cut(s)	149, 456
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	7 cut(s)	88, 157, 182, 296, 448, 506, 568
AluI	AGCT	7 cut(s)	88, 157, 182, 296, 448, 506, 568
AlwI	GGATC	2 cut(s)	308, 321
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	2 cut(s)	147, 201
ApaI	GGGCCC	1 cut(s)	205
ApeKI	GCWGC	6 cut(s)	131, 154, 293, 503, 524, 584
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	201, 202
AsuHPI	GGTGA	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	205
BbvI	GCAGC	6 cut(s)	143, 166, 305, 515, 536, 571
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	2 cut(s)	151, 458
BfaI	CTAG	3 cut(s)	75, 279, 464
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	41
BglI	GCCNNNNNGGC	1 cut(s)	35
BisI	GCNGC	6 cut(s)	132, 155, 294, 504, 525, 585
BlsI	GCNGC	6 cut(s)	133, 156, 295, 505, 526, 586
Bme1390I	CCNGG	2 cut(s)	151, 458
BmgT120I	GGNCC	2 cut(s)	201, 202
BmiI	GGNNCC	2 cut(s)	203, 315
BmrFI	CCNGG	2 cut(s)	151, 458
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	397
BmuI	ACTGGG	1 cut(s)	241
BpmI	CTGGAG	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	167
BsaAI	YACGTR	1 cut(s)	341
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	150, 247
Bse3DI	GCAATG	2 cut(s)	243, 294
BseBI	CCWGG	2 cut(s)	151, 458
BseMI	GCAATG	2 cut(s)	243, 294
BseMII	CTCAG	3 cut(s)	87, 432, 551
BseNI	ACTGG	2 cut(s)	150, 247
BseRI	GAGGAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	6 cut(s)	143, 166, 305, 515, 536, 571
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	149, 203
BsnI	GGCC	2 cut(s)	149, 203
Bsp120I	GGGCCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	149, 203
BspCNI	CTCAG	4 cut(s)	88, 433, 550, 603
BspLI	GGNNCC	2 cut(s)	203, 315
BspPI	GGATC	2 cut(s)	308, 321
BsrDI	GCAATG	2 cut(s)	243, 294
BsrI	ACTGG	2 cut(s)	150, 247
BssMI	GATC	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	151, 458
Bst4CI	ACNGT	1 cut(s)	495
Bst6I	CTCTTC	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	243, 327
BstDEI	CTNAG	5 cut(s)	96, 167, 441, 537, 590
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	1 cut(s)	316
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 163, 242, 284, 293, 326, 555
BstNI	CCWGG	2 cut(s)	151, 458
BstSCI	CCNGG	2 cut(s)	149, 456
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	6 cut(s)	143, 166, 305, 515, 536, 571
BstX2I	RGATCY	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	149, 203
BtsIMutI	CAGTG	1 cut(s)	558
Cac8I	GCNNGC	2 cut(s)	243, 327
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	201, 202
CseI	GACGC	1 cut(s)	404
CsiI	ACCWGGT	1 cut(s)	456
CviAII	CATG	2 cut(s)	268, 600
DdeI	CTNAG	5 cut(s)	96, 167, 441, 537, 590
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	149, 456
EcoT38I	GRGCYC	1 cut(s)	205
FaeI	CATG	2 cut(s)	271, 603
FaiI	YATR	7 cut(s)	228, 269, 299, 374, 401, 413, 601
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	2 cut(s)	267, 599
Fnu4HI	GCNGC	6 cut(s)	132, 155, 294, 504, 525, 585
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	6 cut(s)	132, 155, 294, 504, 525, 585
FspBI	CTAG	3 cut(s)	75, 279, 464
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	6 cut(s)	132, 155, 294, 504, 525, 585
GsuI	CTGGAG	1 cut(s)	590
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	149, 203
HgaI	GACGC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	271, 603
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	351, 394, 593
Hpy188III	TCNNGA	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	495
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	241, 320, 362, 524
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 163, 242, 284, 293, 326, 555
HpyF3I	CTNAG	5 cut(s)	96, 167, 441, 537, 590
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	2 cut(s)	271, 603
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	445, 511
Lsp1109I	GCAGC	6 cut(s)	143, 166, 305, 515, 536, 571
LweI	GCATC	1 cut(s)	397
MabI	ACCWGGT	1 cut(s)	456
MaeI	CTAG	3 cut(s)	75, 279, 464
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	2 cut(s)	443, 528
MflI	RGATCY	1 cut(s)	313
MhlI	GDGCHC	1 cut(s)	205
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	2 cut(s)	471, 519
MluNI	TGGCCA	1 cut(s)	149
MnlI	CCTC	8 cut(s)	28, 71, 121, 206, 418, 427, 436, 499
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	151, 458
MvaI	CCWGG	2 cut(s)	151, 458
MwoI	GCNNNNNNNGC	7 cut(s)	35, 163, 242, 284, 293, 326, 555
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	2 cut(s)	271, 603
NlaIV	GGNNCC	2 cut(s)	203, 315
NmuCI	GTSAC	1 cut(s)	341
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	133, 156, 295, 505, 526, 586
Ppu21I	YACGTR	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	149, 456
PspGI	CCWGG	2 cut(s)	149, 456
PspN4I	GGNNCC	2 cut(s)	203, 315
PspOMI	GGGCCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	201, 202
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	313
SatI	GCNGC	6 cut(s)	132, 155, 294, 504, 525, 585
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	2 cut(s)	201, 202
ScrFI	CCNGG	2 cut(s)	151, 458
SduI	GDGCHC	1 cut(s)	205
SexAI	ACCWGGT	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	399
Sse9I	AATT	2 cut(s)	471, 519
SspMI	CTAG	3 cut(s)	75, 279, 464
StyD4I	CCNGG	2 cut(s)	149, 456
TaaI	ACNGT	1 cut(s)	495
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	480
TasI	AATT	2 cut(s)	471, 519
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	6 cut(s)	131, 154, 293, 503, 524, 584
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	4 cut(s)	17, 284, 314, 483
TspRI	CASTG	1 cut(s)	565
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	75, 279, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.