Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007029.1

Orthogroup ID

OG0011816

Physical Location & Seq

Genomic Coordinates Reverse (-)

18141 .. 20821

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007029.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgaacatcttctccaagaagccaaacgccaaagctcagtgccctaaggcgcttcgggaaagcaagggagaaatgactaatgctactagagggatagagaaggaaattggagcattgcaattagaagaaaaaaagctcgttgctgagataaagagaactgctaaaacaggaaatgaggcagcaactaaaatactggccaggcagctaatcaggcttaggcaacagatagctaacttacaaggaagtagggctcaaatgagaggaatggcaactcatacacaggcaatgcacgcccagtcatcagttgctgttggcatgaaaggtgctagtaaggcaatggcagctatgaataagcaaatggatcctgcaaaacaagcacaggtgatacgtgactttcagaagcagtctgcacagatggatatgactactgaaatgatgtcggacactatagatgatgccatagatagtgatggggcagaagaggaaactgaggagctgacaaaccaggtgctagatgaaattggtgtcgatgttgcctcacagttgtcagcagctccaaaaggaagaattgcagcaaagaactctcagggtgttagcagttctggcactgacgagctggaggaaagattggcagctctcagaaatccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000815 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0010008 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0036452 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 ko04217 map04144 map04217

Pfam Domains

Protein Families

Snf7

Protein Analysis

216

Amino Acids

23.36

Weight (kDa)

7.8

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03950
fragaria_vesca	FvH4_2g21140 FvH4_2g21140
malus_domestica	MD05G1193900.v1.1 MD10G1180500.v1.1
prunus_persica	Prupe.8G220500_v2.0.a1
pyrus_communis	pycom10g15650
rosa_chinensis	RchiOBHm_Chr6g0287631
rosa_laevigata	RLG00000012478
rosa_multiflora	Rmu_sc0004974.1_g000002 Rmu_sc0007029.1_g000004
rosa_roxburghii	Rroxscaffold_7G00181010 Rroxscaffold_7G00181330
rosa_rugosa	Rorug06G0190300 Rorug06G0190400
rosa_samantha	Rh6AG300800 Rh6BG306300 Rh6CG314700
rosa_wichuraiana	Rw6G025950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	356, 369
AcoI	YGGCCR	1 cut(s)	195
AjnI	CCWGG	2 cut(s)	197, 504
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	9 cut(s)	35, 136, 205, 230, 344, 496, 554, 616, 635
AluI	AGCT	9 cut(s)	35, 136, 205, 230, 344, 496, 554, 616, 635
AlwI	GGATC	2 cut(s)	356, 369
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	6 cut(s)	179, 202, 341, 551, 572, 632
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	394
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	197
BamHI	GGATCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	253
BbvI	GCAGC	6 cut(s)	191, 214, 353, 563, 584, 644
BccI	CCATC	2 cut(s)	409, 464
BciT130I	CCWGG	2 cut(s)	199, 506
BfaI	CTAG	3 cut(s)	87, 327, 512
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	6 cut(s)	180, 203, 342, 552, 573, 633
BlsI	GCNGC	6 cut(s)	181, 204, 343, 553, 574, 634
Bme1390I	CCNGG	2 cut(s)	199, 506
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	199, 506
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	445
BmuI	ACTGGG	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	215
BsaAI	YACGTR	1 cut(s)	389
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	198, 295
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	3 cut(s)	113, 291, 342
BseBI	CCWGG	2 cut(s)	199, 506
BseMI	GCAATG	3 cut(s)	113, 291, 342
BseMII	CTCAG	4 cut(s)	50, 135, 480, 599
BseNI	ACTGG	2 cut(s)	198, 295
BseRI	GAGGAG	1 cut(s)	506
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	6 cut(s)	191, 214, 353, 563, 584, 644
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	197
Bsp1286I	GDGCHC	2 cut(s)	44, 253
Bsp143I	GATC	1 cut(s)	361
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	5 cut(s)	49, 136, 481, 598, 651
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	356, 369
BsrDI	GCAATG	3 cut(s)	113, 291, 342
BsrI	ACTGG	2 cut(s)	198, 295
BssMI	GATC	1 cut(s)	361
Bst2UI	CCWGG	2 cut(s)	199, 506
Bst4CI	ACNGT	1 cut(s)	543
Bst6I	CTCTTC	1 cut(s)	474
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	7 cut(s)	36, 45, 144, 215, 489, 585, 638
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMWI	GCNNNNNNNGC	6 cut(s)	211, 290, 332, 341, 374, 603
BstNI	CCWGG	2 cut(s)	199, 506
BstSCI	CCNGG	2 cut(s)	197, 504
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	6 cut(s)	191, 214, 353, 563, 584, 644
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	197
BtsIMutI	CAGTG	2 cut(s)	44, 606
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	308
CfoI	GCGC	1 cut(s)	52
CsiI	ACCWGGT	1 cut(s)	504
CviAII	CATG	1 cut(s)	316
DdeI	CTNAG	7 cut(s)	36, 45, 144, 215, 489, 585, 638
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	45
EcoRII	CCWGG	2 cut(s)	197, 504
EcoT38I	GRGCYC	1 cut(s)	253
FaeI	CATG	1 cut(s)	319
FaiI	YATR	6 cut(s)	276, 317, 347, 422, 449, 461
FatI	CATG	1 cut(s)	315
Fnu4HI	GCNGC	6 cut(s)	180, 203, 342, 552, 573, 633
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	6 cut(s)	180, 203, 342, 552, 573, 633
FspBI	CTAG	3 cut(s)	87, 327, 512
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	6 cut(s)	180, 203, 342, 552, 573, 633
GsuI	CTGGAG	1 cut(s)	638
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HphI	GGTGA	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	399, 442, 641
Hpy188III	TCNNGA	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	543
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	5 cut(s)	118, 289, 368, 410, 572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	211, 290, 332, 341, 374, 603
HpyF3I	CTNAG	7 cut(s)	36, 45, 144, 215, 489, 585, 638
HpySE526I	ACGT	1 cut(s)	388
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	3 cut(s)	110, 493, 559
Lsp1109I	GCAGC	6 cut(s)	191, 214, 353, 563, 584, 644
LweI	GCATC	1 cut(s)	445
MabI	ACCWGGT	1 cut(s)	504
MaeI	CTAG	3 cut(s)	87, 327, 512
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	3 cut(s)	137, 491, 576
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	2 cut(s)	44, 253
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	105, 119, 519, 567
MluNI	TGGCCA	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	7 cut(s)	83, 169, 254, 475, 484, 547, 613
Mox20I	TGGCCA	1 cut(s)	197
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	197
Msp20I	TGGCCA	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	199, 506
MvaI	CCWGG	2 cut(s)	199, 506
MwoI	GCNNNNNNNGC	6 cut(s)	211, 290, 332, 341, 374, 603
NdeII	GATC	1 cut(s)	361
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	363
NmuCI	GTSAC	1 cut(s)	389
PdmI	GAANNNNTTC	1 cut(s)	8
PkrI	GCNGC	6 cut(s)	181, 204, 343, 553, 574, 634
Ppu21I	YACGTR	1 cut(s)	389
Psp6I	CCWGG	2 cut(s)	197, 504
PspGI	CCWGG	2 cut(s)	197, 504
PspN4I	GGNNCC	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	361
SatI	GCNGC	6 cut(s)	180, 203, 342, 552, 573, 633
Sau3AI	GATC	1 cut(s)	361
ScrFI	CCNGG	2 cut(s)	199, 506
SduI	GDGCHC	2 cut(s)	44, 253
SexAI	ACCWGGT	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	447
Sse9I	AATT	4 cut(s)	105, 119, 519, 567
SspMI	CTAG	3 cut(s)	87, 327, 512
StyD4I	CCNGG	2 cut(s)	197, 504
TaaI	ACNGT	1 cut(s)	543
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	528
TasI	AATT	4 cut(s)	105, 119, 519, 567
TscAI	CASTG	2 cut(s)	44, 613
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	6 cut(s)	179, 202, 341, 551, 572, 632
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	17, 332, 362, 531
TspRI	CASTG	2 cut(s)	44, 613
XmnI	GAANNNNTTC	1 cut(s)	8
XspI	CTAG	3 cut(s)	87, 327, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.