AT1G04530

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008761
Physical Location & Seq
Reverse (-)
1234176 .. 1236206
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04530.1

Sequence Viewer

Length: 933 bp
ATGCTGAAGAGCGAGGCATCTCTCTCGATTTACTGCGACTCTGGAGATGGGTTCAAATCCGAAGATCCGGTGACTGGAATCGAGGAGAATTTGGAGAGAACGGTTACGATTGGTGATGCTATTGACGGCGGCGAGTTCAGTTTTGCGAAACACAAGGAAGAAGATAGTGGTGAAGGTGAGAGAGGTGTTTTTGAAGAGGTTATTAAGAAGCTTGGGATTGGTGTGAGAGATGAACTAGGTTTTGAGATTGAAAGACCACCAAGCCCTCCTATGCATTTAGCTGCAGGGTTAGGAATTGATAAGTTTGATTTGTATGGTAGTGAGATCAAATTCGATTTGCCGGGTTACGATGATAAGAATTGTGGTGATTACTACAAAGGAATGCTCGAGGAGTATCCATTGCATCCTTTGCTTCTCAAAAACTATGCCAAGTTCTTGGAGTATAAAGGAGATCTTAGTGGAGCAGAAGAGTATTATCATAAGTGTACTGTAGTTGAGCCTAGTGATGGAGTAGCTTTAGCAAACTATGGTAGATTAGTAATGAAGCTTCACCAAGATGAAGCTAAAGCCATGAGCTACTTTGAACGTGCAGTTCAAGCATCTCCTGATGATAGCATTGTTCTTGCAGCATATGCTAGTTTCCTCTGGGAGATAAACGCGGATGATGATGATGAGGATGATGATGAGGATGATGATGAGTCTTCTGGACAAGGAAAAGACGAATTTGAGGCTGATGCAGCGGGAAAAGGCAAATCAAGCTTGTCCAAGACAGAAGATGGAGAAACGCTATGCAGATACGCGAAGGCGTTCTGGAGTATTAATAATGACCATGAGAAGGCCTTGTTCTACTTTGAGAAGGCCGTTGAAGCCTCTCCAAATGATAGCATTATTCTTGGAGAGTACGCTCGGTTCTTATGGGAAATAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_8

Protein Analysis

310

Amino Acids

34.55

Weight (kDa)

4.3

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 659, 800
AciI CCGC 3 cut(s) 129, 659, 740
AclWI GGATC 1 cut(s) 59
AcsI RAATTY 3 cut(s) 88, 329, 722
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 2 cut(s) 487, 902
AfiI CCNNNNNNNGG 3 cut(s) 74, 506, 835
AgsI TTSAA 6 cut(s) 55, 194, 251, 584, 596, 866
AluBI AGCT 7 cut(s) 211, 281, 515, 547, 563, 576, 759
AluI AGCT 7 cut(s) 211, 281, 515, 547, 563, 576, 759
AlwI GGATC 1 cut(s) 59
Ama87I CYCGRG 1 cut(s) 386
AoxI GGCC 2 cut(s) 837, 858
ApeKI GCWGC 3 cut(s) 281, 626, 737
ApoI RAATTY 3 cut(s) 88, 329, 722
AseI ATTAAT 1 cut(s) 819
Asp700I GAANNNNTTC 1 cut(s) 806
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 6 cut(s) 82, 125, 182, 188, 377, 542
AvaI CYCGRG 1 cut(s) 386
BarI GAAGNNNNNNTAC 2 cut(s) 531, 563
BbsI GAAGAC 1 cut(s) 693
BbvI GCAGC 3 cut(s) 268, 638, 749
BccI CCATC 3 cut(s) 41, 500, 770
BceAI ACGGC 2 cut(s) 142, 845
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciVI GTATCC 1 cut(s) 405
BcnI CCSGG 1 cut(s) 342
BfaI CTAG 3 cut(s) 236, 501, 636
BfmI CTRYAG 2 cut(s) 282, 489
BfuI GTATCC 1 cut(s) 405
BglII AGATCT 1 cut(s) 451
BisI GCNGC 4 cut(s) 130, 282, 627, 738
BlsI GCNGC 4 cut(s) 131, 283, 628, 739
Bme1390I CCNGG 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 386
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 5 cut(s) 26, 106, 412, 608, 724
BpiI GAAGAC 1 cut(s) 693
BpmI CTGGAG 2 cut(s) 63, 832
BpuMI CCSGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 506, 835
Bse1I ACTGG 1 cut(s) 79
Bse3DI GCAATG 1 cut(s) 398
BseGI GGATG 4 cut(s) 403, 667, 682, 694
BseLI CCNNNNNNNGG 3 cut(s) 74, 506, 835
BseMI GCAATG 1 cut(s) 398
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 98, 404
BseXI GCAGC 3 cut(s) 268, 638, 749
BsgI GTGCAG 1 cut(s) 609
Bsh1236I CGCG 2 cut(s) 659, 800
BshFI GGCC 2 cut(s) 839, 860
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 2 cut(s) 68, 341
BslI CCNNNNNNNGG 3 cut(s) 74, 506, 835
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 2 cut(s) 839, 860
BsoBI CYCGRG 1 cut(s) 386
Bsp143I GATC 3 cut(s) 64, 324, 451
BspACI CCGC 3 cut(s) 129, 659, 740
BspANI GGCC 2 cut(s) 839, 860
BspFNI CGCG 2 cut(s) 659, 800
BspMAI CTGCAG 1 cut(s) 286
BspPI GGATC 1 cut(s) 59
BspQI GCTCTTC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 398
BsrI ACTGG 1 cut(s) 79
BssMI GATC 3 cut(s) 64, 324, 451
Bst4CI ACNGT 2 cut(s) 103, 490
Bst6I CTCTTC 3 cut(s) 2, 189, 462
BstAPI GCANNNNNTGC 2 cut(s) 409, 632
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 4 cut(s) 403, 667, 682, 694
BstFNI CGCG 2 cut(s) 659, 800
BstKTI GATC 3 cut(s) 67, 327, 454
BstMBI GATC 3 cut(s) 64, 324, 451
BstMWI GCNNNNNNNGC 6 cut(s) 409, 596, 632, 737, 756, 866
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 2 cut(s) 282, 489
BstUI CGCG 2 cut(s) 659, 800
BstV1I GCAGC 3 cut(s) 268, 638, 749
BstV2I GAAGAC 1 cut(s) 693
BstX2I RGATCY 2 cut(s) 64, 451
BstXI CCANNNNNNTGG 1 cut(s) 436
BstYI RGATCY 2 cut(s) 64, 451
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 2 cut(s) 839, 860
BtsCI GGATG 4 cut(s) 403, 667, 682, 694
Csp6I GTAC 2 cut(s) 486, 901
CviAII CATG 2 cut(s) 571, 830
CviQI GTAC 2 cut(s) 486, 901
DdeI CTNAG 1 cut(s) 455
DpnI GATC 3 cut(s) 66, 326, 453
DpnII GATC 3 cut(s) 64, 324, 451
Eam1104I CTCTTC 3 cut(s) 2, 189, 462
EarI CTCTTC 3 cut(s) 2, 189, 462
Eco147I AGGCCT 1 cut(s) 839
Eco57I CTGAAG 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 386
EcoT22I ATGCAT 1 cut(s) 276
FaeI CATG 2 cut(s) 574, 833
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FatI CATG 2 cut(s) 570, 829
FauI CCCGC 1 cut(s) 733
FauNDI CATATG 1 cut(s) 631
Fnu4HI GCNGC 4 cut(s) 130, 282, 627, 738
FokI GGATG 4 cut(s) 390, 674, 689, 701
Fsp4HI GCNGC 4 cut(s) 130, 282, 627, 738
FspBI CTAG 3 cut(s) 236, 501, 636
GluI GCNGC 4 cut(s) 130, 282, 627, 738
GsuI CTGGAG 2 cut(s) 63, 832
HaeIII GGCC 2 cut(s) 839, 860
HapII CCGG 2 cut(s) 68, 341
Hin1II CATG 2 cut(s) 574, 833
HindIII AAGCTT 3 cut(s) 209, 545, 757
HinfI GANTC 3 cut(s) 38, 78, 698
HpaII CCGG 2 cut(s) 68, 341
HphI GGTGA 6 cut(s) 82, 125, 182, 188, 377, 542
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 5 cut(s) 25, 42, 605, 705, 811
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 4 cut(s) 167, 796, 829, 850
HpyCH4III ACNGT 2 cut(s) 103, 490
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 7 cut(s) 274, 284, 403, 590, 626, 737, 792
HpyF10VI GCNNNNNNNGC 6 cut(s) 409, 596, 632, 737, 756, 866
HpyF3I CTNAG 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 2 cut(s) 574, 833
Kzo9I GATC 3 cut(s) 64, 324, 451
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 1 cut(s) 461
LpnPI CCDG 9 cut(s) 27, 60, 81, 270, 354, 618, 631, 690, 796
Lsp1109I GCAGC 3 cut(s) 268, 638, 749
LweI GCATC 5 cut(s) 26, 106, 412, 608, 724
MaeI CTAG 3 cut(s) 236, 501, 636
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 3 cut(s) 70, 103, 344
MalI GATC 3 cut(s) 66, 326, 453
MboI GATC 3 cut(s) 64, 324, 451
MboII GAAGA 8 cut(s) 19, 74, 170, 173, 206, 479, 693, 785
MflI RGATCY 2 cut(s) 64, 451
MluCI AATT 5 cut(s) 88, 294, 329, 358, 722
MlyI GAGTC 2 cut(s) 32, 707
Mph1103I ATGCAT 1 cut(s) 276
MroXI GAANNNNTTC 1 cut(s) 806
MseI TTAA 2 cut(s) 204, 819
MslI CAYNNNNRTG 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 2 cut(s) 68, 341
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 387
MvnI CGCG 2 cut(s) 659, 800
MwoI GCNNNNNNNGC 6 cut(s) 409, 596, 632, 737, 756, 866
NciI CCSGG 1 cut(s) 342
NdeI CATATG 1 cut(s) 631
NdeII GATC 3 cut(s) 64, 324, 451
NlaIII CATG 2 cut(s) 574, 833
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 386
PceI AGGCCT 1 cut(s) 839
PciSI GCTCTTC 1 cut(s) 2
PctI GAATGC 1 cut(s) 387
PdmI GAANNNNTTC 1 cut(s) 806
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 4 cut(s) 131, 283, 628, 739
PleI GAGTC 2 cut(s) 32, 706
PpsI GAGTC 2 cut(s) 32, 706
PshBI ATTAAT 1 cut(s) 819
PspXI VCTCGAGB 1 cut(s) 386
PsrI GAACNNNNNNTAC 2 cut(s) 893, 925
PstI CTGCAG 1 cut(s) 286
PsuI RGATCY 2 cut(s) 64, 451
RsaI GTAC 2 cut(s) 487, 902
RsaNI GTAC 2 cut(s) 486, 901
RseI CAYNNNNRTG 1 cut(s) 555
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 2 cut(s) 204, 819
SatI GCNGC 4 cut(s) 130, 282, 627, 738
Sau3AI GATC 3 cut(s) 64, 324, 451
SchI GAGTC 2 cut(s) 32, 707
ScrFI CCNGG 1 cut(s) 342
SfaNI GCATC 5 cut(s) 26, 106, 412, 608, 724
SfcI CTRYAG 2 cut(s) 282, 489
Sfr274I CTCGAG 1 cut(s) 386
SlaI CTCGAG 1 cut(s) 386
SmiMI CAYNNNNRTG 1 cut(s) 555
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 5 cut(s) 88, 294, 329, 358, 722
SseBI AGGCCT 1 cut(s) 839
SsiI CCGC 3 cut(s) 129, 659, 740
SspMI CTAG 3 cut(s) 236, 501, 636
StuI AGGCCT 1 cut(s) 839
StyD4I CCNGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 103, 490
TaiI ACGT 1 cut(s) 589
TaqI TCGA 4 cut(s) 26, 81, 333, 387
TasI AATT 5 cut(s) 88, 294, 329, 358, 722
TatI WGTACW 1 cut(s) 485
TauI GCSGC 1 cut(s) 132
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 204, 819
Tru9I TTAA 2 cut(s) 204, 819
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 3 cut(s) 281, 626, 737
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 246, 557, 573
VspI ATTAAT 1 cut(s) 819
XapI RAATTY 3 cut(s) 88, 329, 722
XhoI CTCGAG 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 806
XspI CTAG 3 cut(s) 236, 501, 636
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.